RNA id: XM_036979689.1


Basic Information

Item Value
RNA id XM_036979689.1
length 4576
RNA type mRNA
GC content 0.47
exon number 12
gene id LOC110525561
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 23888654 ~ 23911739 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGTTGTAGTGCGCCTATGAACATTCCTGTAGATTTCCTCGGTGGGGTTGTATGTCTAGATCTGTGGGTGCACTTTTGAATAGGTCACATCAACTTCGCCTAAAGAATGCAAACAACGTGTTGAATACCGTGCTGCTGGCTTTGAGTATCTGCACTGTGAAACTTCTCATTGGTCTTGGGAGCAGGTTTCTGCACTGAATGCACTGACCAGGTATTAAAGACAAGGAGCCAGATGTCTTCACATTGCCCATCTGTACTATTCTTGACCATTCCCTCCCTACCACCCTCCAGTCCCACTCTGACTCTGGGTGCCCTTTGTAACCAACCCTATAAGCAAATGCAATCTGCCTTTCCATTGGCTTTGCctgccccctgtctctcctgaccTTTCCTGTGCATATTCATGAGGCTTCCTGTCGCCGTGTGTGTGCCTGTACAGCTGCTTGGTTCTGAActgtgtgtggagaggggagggagagagacggagaaagggGGACGAGTGAGCAGGGAACagcagcagggctggaggctTCAGCCATGTCAGTTTTCTCTACAACGCTGGACAGACGATGAGAAGAGAGGAACAATGGCCTTGTCACTGAGTGCAGACGAAGAGGATTATGATTCAGAATCTGAACAGcaACGAGAAGCCAACCGGCCAAAGCCCAAGATGGGGACTTCAGCAGCGGTCAAGCTTCCGTCCAATCGCAGTGCGTCTGGTGCCAGACGCAGGAGAACACGCTGCCGAAAGTGTGAGGCGTGCCTCCGAACTGAGTGTGGAGAATGTCACTTCTGTAAAGACATGAAGAAGTTTGGAGGACCTGGGCGCATGAAGCAGTCCTGTATCATGAGGCAGTGCATTGCACCTGTCCTGCCccacacagctgtgtgtgtggtgtgcggaGAAGCAGGGAAGGAGGACacattggaggaggaggacaagTTCAACGTCATGCTCATGGAGTGCTCCATCTGCAATGAGATTGTCCACCCCAACTGCTTAAAGGTAAAAGAGGCTTCTGGCGTGGTGAACGATGAACTTCCTAACTGTTGGGAATGTCCCAAATGCAACTACGCTGGGAAAACCGGAAAAGTCTGCAAGCAAAAAAGGGGACCAGGGTTCAAGTATGCGTCTAACCTCCCTGGCTCCCTGCTGAAGGAGCAGAAGGCAGTCAAGGAGGAGGGTGAGGCCACATCTACGTCTACAGCCAAGAGGAAGCCTGAGGGGGATGAAATCTCAAGACACAGACCTGAGGAACGGGAGCCCCTCCACAGACACCCCCCTGTCCTGACCCCCAGCACCCTGCCTCGGCCCAGACCTGAGGATAaactgaggaagaagaggaagctCTTCGACGATGACGAGGAAGAGGACTTCAGTGTGAGGAAGAAGgGAAAGGCAGATGAACCTCTGTTCCCCAAACTCCTTCATCAGATCAAGACTGAGGAGGAAGACCAGGAGGAGGAAGTGGATGAGGAGGAGACAGACTCTCTGTTCTGGCgaggcctggagaggagagatcGTTTAGAAGATACCGAGGACTGGGCAGAGGACGGGGATGGCAAAGACACAAAGACAAACTTTCCAAGGCCTCCTCTCAAAACTCCTGTTCTAGACAGTGACCAGTCTCACTGCAGCTCTCCACAGGCTGGCCCCAGCAGCGAGGGTGGCAGTGAACCCCAGGAGAAGGGCCCACGCCCCAAAGCGCGCCGCAAACGCCGTTTACCCAACAAGGAGCTGAGCAAAGCACTGAACCAGGAGATCCAAAAGACTGAGGACTGCCTAGCCAATGAGAACCGCCAACCCCTCAAGGTGGAGCCAGAGAGTGAGAATGAGGAGCCCAAGAGGGGCTTCCGCATCGGCAGTGACCTGGGAGGGGAGCGCCCCCACCTCCGGACCAAGGAAATGAACGGCACCCCCTGGGAGCTGCGCCACTTCTACCCCAGCCAGATCACCCCTCTGGGCTTCAACAGGAGCTCCCCTGGCACCCGGCCCCTGCCCCCACGCTCCCCACCCAAGTGTGTCCAAATGGAGCGGCACGTAATCCGGCCACCCCCCATCAGCCCCCCGCCGGACAGACTGCCCCTGGTGGACGGGAAGACCCATGCAGTTCAGCGAGAGGTCTGGATGAAGCTCTTTGGGCACTTCACACACAAGGAgctgtgtgtctgcatgcgtgtCTGCAAGACATGGAATAGATGGTGCTGTGATAAAAGACTGTGGACCAACATCGATCTGAACCGCTGTAAATCTATCACTCCCCTCATGCTGAGTGGCATCATCCGCAGACAGCCCCTCTCACTGGACCTCAGCTGGACCAACATCTCCAAGAAGCAGCTGAGCTGGCTAATAAACCGCTTACCAGGTCTGCGGGTGTTGCTGCTCTCAGGGTGCTCGTGGGTGGCTGTGTCTGCCCTCTGCACCTCTAGCTGCCCTCTGCTGCGCACCCTGGATGTGCAGTGGGTGGAAGGGCTCAAAGATGCCCAGATGAGGGACCTGCTCTCGCCCCCGACCGATAACAGACCAGGTCAGTTGGACAACCGCTGTAAACTGAGGAACATCCTGGACTTGCGTCTGGCCGGGCTGGATATCACAGATGCCTCTCTGCGTCTGATTATCAGACATATGCCGCTACTTTCCCGACTGGACCTGAGCTACTGCAACCACATCAACGACCATTCGGTCAACCTGCTGACGGCCGCAGGGACCACAACCAGAGATTCACTCACGGAGATCAACCTGTCAGTTTGTAATAGGGTGACAGACCAATCCCTTACCTTCTTCAAGCGCTGTGGAAGCATCTGTCACATTGACCTGCGCTATTGCAAACAGGTGACCAAGATGGCCTGTGAACAGTTCATAGCAGAGATGTCTGTGAGTGTACAGTTTGGACTCAAAGAGGACAAATTACTGCAGAAACTCAGTTAGACATTGACATCAAGGCCAAACAGCAAAAAAGAACTACCCTTTGCACTAAATGGAGCAAGACAAGGTTTCCCCCATCAAGCCTGCACTGGTTGGTTTTGTATGTTTGTTTCTTCTTCATTGGAGAATCTACTGTGTTAGATTTGTGAACGAACAATGTCACACGAGTTGATGAGAGGAGCAGAAGTGTGTAAATGAACAAGGGGGATGGTCAAAATGTTTGCATCAATGTCTTTCTGGATGTTACAAACCCATCCTTGTACTGAAAGGCAAAGATGTCCTGGacaggagatggggagggaaaaCAAAGCATGCATTCGTTCATTTTGGTGTTAAGATTGTACCTTTTTCAAAGGCTTGTGTTTGTTGGATTTCATTTGTTGGGGGATTTGTTTTCTATTACTTATACATGTTAAATGTTTAAGACATTTTTTTGTACAACAATAATTCACGCATTGGGCTAACATTTGAGGTTATAGTGAAGTTTTAAGTATGCAGTACCATACACACCCCAGATTTCAACTCTTACATCTGAATATTGACCTACCGTACTTTAAATCAGCTTGCCTTGACACCGAtggtaatatatatttttggatgttatttttttttacctgataTCATGTGCCAAATTCTGATGGTGACATTACAAGTTAATGGTAGTTACTGACTTGGACTGGAATTAATTTAATACTTTACTTTCAAAAATGAACATAAGACTATTATtataaaataatacatgttttAAATGTTTAAGTAAATAAGAATTAAATAAATGTTGCAAATATGGTTAGGTTAATGAATATATCTTGAAATTAATCAGTCAATAAATATTGACATAAGGAATGTTagtcaaatgtattttttcaaTCTCTCAGTACCTTCTGCATTTTCCTATGTTTCGTACATATGCCAATCTGTTGTTTCACATGTTTTAGCACTCAAGAGCCCATAATGTGAGATTCTGTCAAGTAATTGAATCATCTGCTTTAAAGGGCCAATCCACATTTAAAACAATAACCAAGCGttccccgcctctgttttggtaaaaggcTGAGGgctgggcctggagaaatgtaatcccTCTCTAATCGAAGACTTACAAGAATGcaaagactgaccatccatgatatcataattatagttttaaccatgttttgaggcaatacagtttgtttacaaacattggaggaatacaagcttatattttgagtTCTGATGGGATACgatagttgaactaagctcatgaggcatttgtaAGGTatattcaagaatcaatgagtATATATCATTAATTTCTAATCCAAAAATGAGTGTAGCAACTGCAGACTGCCCCTTCACTGTTTCCACAGGTGCATACAGTCACAGTGGCCTCCACAGACTTGGCATGTAATGAGTTTCTTTGAAAGAGCATTTGATCATCCTATTTTTAATTCAAGATCGACTATCTattcattttgtatttatttatattagtTATCATCCATAATTGTGATGTAATTATAATTTGCCATTTTCTGTTGACCGTGACCTACAATGTCACAAGTGAATGATATTGGCCACCTTGAATACAGATGCACAAGATGTAGTTGTTTAAATCTAAAATCTAGTGCTATGATTGTCATTAAAAGTATATTTCtatgtataaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU554224 lncRNA downstream 25647 23857862 ~ 23863007 (-) True G487628
TU554216 lncRNA downstream 48657 23839762 ~ 23839997 (-) True G487620
TU554126 lncRNA downstream 159118 23729308 ~ 23729536 (-) True G487553
TU554113 lncRNA downstream 167819 23718386 ~ 23720835 (-) True LOC110525553
TU554118 lncRNA downstream 178524 23708018 ~ 23710130 (-) True LOC110525551
TU554255 lncRNA upstream 2627 23914366 ~ 23915175 (-) False G487650
TU554254 lncRNA upstream 2675 23914414 ~ 23915707 (-) True G487650
TU554260 lncRNA upstream 16153 23927892 ~ 23928124 (-) True G487655
TU554261 lncRNA upstream 17512 23929251 ~ 23929771 (-) True G487656
TU554280 lncRNA upstream 42137 23953876 ~ 23954168 (-) True G487670
LOC110525220 mRNA downstream 33139 23850010 ~ 23855515 (-) True LOC110525220
XM_021605771.2 mRNA downstream 56113 23814802 ~ 23832541 (-) True LOC110525558
XM_021605768.2 mRNA downstream 108934 23757804 ~ 23779720 (-) True LOC110525555
XM_036979683.1 mRNA downstream 109348 23757804 ~ 23779306 (-) False LOC110525555
XM_036979685.1 mRNA downstream 115757 23757804 ~ 23772897 (-) False LOC110525555
LOC110525564 mRNA upstream 4057 23915796 ~ 23918064 (-) True LOC110525564
XM_036979694.1 mRNA upstream 32147 23943886 ~ 23948238 (-) False LOC110525565
XM_036979693.1 mRNA upstream 32147 23943886 ~ 23948503 (-) True LOC110525565
XM_021605782.2 mRNA upstream 58349 23970088 ~ 23972273 (-) True LOC110525566
XM_021605785.2 mRNA upstream 112807 24024546 ~ 24031999 (-) True LOC110525568
TU554111 other downstream 170871 23713875 ~ 23717783 (-) True LOC110525552
TU554033 other downstream 303100 23583036 ~ 23585554 (-) False LOC110525180
TU554039 other downstream 303100 23583036 ~ 23585554 (-) True LOC110525180
TU553494 other downstream 496592 23390017 ~ 23392062 (-) True G487016
TU553500 other downstream 502747 23385534 ~ 23385907 (-) True G487022
TU555138 other upstream 441794 24353533 ~ 24353823 (-) True G488386
TU555289 other upstream 749158 24660897 ~ 24674901 (-) False LOC110525585
TU555288 other upstream 794832 24706571 ~ 24709420 (-) False LOC110525585
TU555826 other upstream 1194466 25106205 ~ 25106570 (-) True G489038
TU556319 other upstream 1585224 25496963 ~ 25497489 (-) True G489511

Expression Profile