RNA id: XM_021605788.2


Basic Information

Item Value
RNA id XM_021605788.2
length 4879
RNA type mRNA
GC content 0.47
exon number 5
gene id LOC110525572
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 24059911 ~ 24071705 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCAGCTTTCTATCCTCTCGTTCTCCATCTCCACCTTTCTCCCTGTCTGTCGTTGAGGGTTTCAAAGGATATCAACCGGGCCTGAGATAGGCTACTCATAAGCGATATTCAGCATTTAAGGTCAATTGATCAGGAGGAGAATGGATCCAGTTTGAGCATCTTGACTGATAAGTTGCCGAGTGTGATCCTGTAACCATGGCGACCTGTGGGCGTGGTTGCGTCCCGGCAGTGCGTTTCTGCCAAAGGCTGAACCGACTGAAGACCCTGGATGATGATTTGATGGTGACATCAATGAAGCGCTGCCTGACCATGGTGGACCTGGCCCTGCTGGGTGTTGGGGGCATGGTGGGCTCTGGTCTCTACGTCCTGACAGGCACTGTGGCCAAGGACACCGCAGGACCTGCCgtggtcctctccttcctcatAGCAGGCATCGCCTCCCTGATGGCCGCGCTCTGCTATGCTGAGTTCGGAGCTCGCGTGCCCAGAACGGGCTCAGCCTACATGTTCACCTATGTTTCTTGTGGAGAAATATGGGCCTTTCTCATTGGCTGGAACGTAGTGTTGGAGTACATGATTGGTGGGGCCGCGGTGGCGCGGGCGTGGAGTGGTTACCTGGACTCCATGTTTAACCACACTATCCAGAACTACACAGAGAACCACATAATGAAGTGGAATGTTCCCTATATCGCCCACTACCCTGACCTGCTGGCCGCCGGGATTCTAGTGGTTGCCACCATCTTCATAACCTTCGGAGTGCGAGTCTCTTCTTGGCTCAACCACATCTTCTCCGCTGTTAGTCTGGTTGTCATACTCTTCATCTTGGTGTTTGGCTTCGTGCTGGCAGATCCAGTCAACTGGAGCCAGAAAGAAGGAGGTTTTGCACCATTCGGTGTGTCTGGGGTTATGGCAGGCACAGCCACCTGCTTTTACGCATTTGTTGGCTTCGATGTGATTGCAGCCTCCAGCGAGGAGGCTAAGAACCCCCAGCGAGCCATTCCTATGGCCACAGCCATCTCCTTGTGCATGGCAGCCACAGCCTACATCCTGGTCTCCACTGTCCTCACTCTCATGGTGCCCTGGCACTCCCTCGATCCAAACTCAGCTCTGTCTGACGCCTTCTTCCGCCGAGGCTACAGCTGGGCTGGCTACATCGTGGCAGTAGGGTCCATCTGTGCCATGAACACAGTGCTCCTCAGcaacctcttctccctccctcggATTGTTTACGCTATGGCGGAGGATGGCCTCTTCTTCGCCTTCTTTGCCAAGGTCAACCCTGTCACCAAGGTCCCTGTGAATGCCATCTTGGTGTTTGGCCTCCTCATGGCCGTCATGGCCCTCATCTTTGACCTGGAGGCCCTGGTCCAGTTCCTGTCCATCGGCACCCTCCTGGCCTACACCTTTGTGGCAGCCAGTGTCATTGTGCTGCGCTTCCAGCCTGAGAAGGAGAAGACCAGTTCCAAGGCTAACTCCACTACCTCCCCTAACACCAACTACAACCCAGAGCCCTCACCCGAAGCCTCCGAGTCCCAGATCATAGCTCAGGACAGCGGGGAGCTGAAGGAGTATGAGTCCTTCTCAGACAAGCTACAGCTGGTGGAGATGCAGAAGACCAGGGAACGCAGCGCCCCAGGGGTGTTGAAGGCTCGCTGGGAGCCCTACCTGGGCAGGTTGCTAGGGGACTTTGAGCCGGGGGAGGTGGTGGCCTTCTCTGTGCTGGCTGTGATGGTGagctctgtgtccctctgtgccGTTTTTGTGTTTGGGAGTAACCAGCTGCAGCTGCCTACGTGGAGCTTCGCCGTGCTAATAGTCGTGTTTGGCTCAACCTTCCTCCTCAGCCTGCTCGTCATATATGCCCATGAACCACATATCAACACCAAAACCTTCCAGGTACCCTTGGTCCCATTCATCCCTGGTGCAAGCATCCTCATGAATGTGTTCCTAATGCTGAAGCTCAGCCCAATGACCTGGATCCGCTTTACCGTATGGGTGGCTGCAGGTCTACTGGTGTATTTTGGCTATGGGATATGGCACAGTAAGGAGGGCCTGAGGGAGCTGCAGCCCAAGGACATGGCTGCCAGGTACGTGGTGCTCCCTAGTGGCAGCCTGGTAGAGACAGTCCAGTCAGTGCAGCCGAACGGACACGGGGACGCCAGCGCCCTCCACACCACCCCCTCCCCCGCCCAGTCTGCTGAAGAGCAGCAGGCAAAGAGATGATGTGTGGGAACTAGGAAGGGAGCCATCTTTATTTCAGTGGGCCGTTTATCATCTATCTGCTCCTACTCATACATTAcctcactctcttctcctctgactTCCCTCTCGTGACTGGCCTCATACAATCAGTGTGTACTGCCACAAGGCTGTGTTTCTCTGCGTTAGTAAGTACACATCACACAAATGAGATTTACGCTCTCTCATTATGaaacatatttatatttatttttacatatTGTATCTCTTAATATGGGAACATAGTAATAAAGCTATCTAGCATTGTTTAGGATATTGCTATTGGTTATAATCActgtatttacaaaaaaaatggtAGATAAACCAGCACAGGTGTTATTTCCTTGTTAGCATTTCTCTCAACTCCTCAATTGATCTGCTTTTTAATGTCTCTCAGTCACTCACAATTGAATGTGTTTGGAAGTAGGATGGTGCTTTAGGTCATAGCATACATTGAGTCATGTTGATAAGCTGCATTTTTCATTTTGTAAGCACTGGAATGAATGGACCTTTGTTTACACACACCCATGTACAAACACATATTCACATTTGCTTtctctcgcacgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaagcattatTCTTGCCTGAGGAGAGACTAGGTTCTGTCAGTGGGTCATGTGGGTCCACTTACAACCCCTGGGACCACCTCAAGATCCCCCTCATTCCCCCGCACTAGTGGCTGCTCAGCCAAACGCAAatcatttacatacattttctatTTTAATGATTATTTCGGACTTGTTTCATGTAGTTTCTGAGCTGTGAAACAGTCTATTTTATCATTTTAATTTTGCATTTCACTGATGGCATATCACACACATATTATGTTCTgttttgggatgtttttgtaCCTCGCTTCGTATCATAATGACCCGACTCCACTTGTTAATGTTCTCTGTCTCCATCACATGAGATTGTCACTCTCTTCTTCTAAGGCGGAGTTGGCCTTTCAACCTCTCACTTAATCCACTGACTCCCATCCAATGACCTCACTCACTCTTATGTGTCCCAGATTTTGCAATCAGCCTAATATCTACTAAGAATGGTTATTCCCCCAATGCACAAGAACTAGACAGCGACCCATTCCCCTTCTGTGTGCTAGCATGAGATTAGTTTATACAACCATCTAATATAAAAGCACCTGGATTATTTTAGCTATGGTTTTGTTCTCATTTCTCCTCATACACAACAGTGATAATGCGAGACGAGAGTTATAAACTTGTGTTTTAATATATGCTTTTTGTAAGGCAAGCACAAACCCAGTTCATGATGTACCTGAACAGGGTATTTGGTGCTGCTGTTTAGAAGCATATTAACAAACAGGGATTGAGCGTTTTGTCAGACTATGCCAGCCATAGGACATCTTTTATCCTCATGAGACCTCTGTAATCCGACAGATTTGCAGCAGTCCCTGCGGTTGACCAATAGCTTGATCTAGATTACATACACGCACAGATCACTCTCACTCGCAGTGCTGGATTACACTGACCTCCTCAGAGAGGGATTGCACTCTCACACCCAGTTACTCACTACCCTGTCTGATAGCACAGTGTTCGAGAGGGCAGTAAGATGTCATGACAATGTAACGTTGTCTCAACGTGATAATCATAACATTCCCATAGCTAAAGTTTTCAGTCAAGTCCTGAGAACGGATTATTTTGTTACCTATAAGGTGTATATTTGTTTGTCACGTTTGGAGATTGCGGTAAAACGTCTACGATTTATctgtataataataatgtaactACAGCATTGCCTTGATGTTATTAGCGTTTTCTATATATCACAGTCCTTAGAATGATGACAAATAAGCATGAGTCCCTCACTACCGGCTACCAACCTCACACGTGTCTGTAGCTCACCTTAGTGTTGTACTCAAAAAGATGTTTGTTTTAAAAGTCTCTTATTTATCACTATTTATTAGTTATTGTAAACATACATttgtatatgtaaatatatgaCACAAGCAACCAATGGCCTTAAAGATGTTTTCATGAGTACAGAATGATTCCCAAAGCTTACGTGAAATCTAAACAACTTGTTGTTCAGGTAGCTTTTCACCTCTATCCAAGTAGTTTACCCTGTTATAATCTCAGTATTTATTCATAGGATATTATATTGTAAACTACTATATTCCATTCAATTGATTTCAACAACAGATACAGCCTTTGAAGTAATCAAATGTTGGTTAATGTGGGGATAACAAAATATTAAATTGATTTTTGTACAACTTTGCACATAGTTTAAGATTTTAACTGCAAACGACTGTATGTGTCTCTCTACCAGTGTGTCTCTGTTTTTCCTGCGTGGGCAAGTGACAGGTGTTGACACTATGGTGCTTTTGGCAAGCTGAACATTTCCTCACCTCGATGAGTTACGCTCTCTGTCTTGTGTGGCAGTAAGCACAATGCGCTATGGGCTCTGACTGTACCTATGTACTCTGTACTTACACATTCAAATTCTAAGTATTTTTTGTTGTATAAAGTCTAAAAGAAGCTGTGTTATTTCgtgacaaataaatgttttgaagCAGCA

Function

GO:

id name namespace
GO:0003333 amino acid transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015171 amino acid transmembrane transporter activity molecular_function

KEGG:

id description
K13866 SLC7A4; solute carrier family 7 (cationic amino acid transporter), member 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU554271 lncRNA downstream 36811 24019572 ~ 24023100 (-) False G487662
TU554272 lncRNA downstream 37846 24019572 ~ 24022065 (-) True G487662
TU554318 lncRNA downstream 41885 24017745 ~ 24018026 (-) True G487708
TU554291 lncRNA downstream 91257 23968449 ~ 23968654 (-) True G487681
TU554283 lncRNA downstream 102129 23957574 ~ 23957782 (-) True G487673
TU554421 lncRNA upstream 119545 24191250 ~ 24191474 (-) True G487795
TU554424 lncRNA upstream 123057 24194762 ~ 24195075 (-) True G487798
TU554427 lncRNA upstream 126361 24198066 ~ 24198697 (-) True G487801
TU554431 lncRNA upstream 130217 24201922 ~ 24202251 (-) True G487805
TU554433 lncRNA upstream 133176 24204881 ~ 24205232 (-) True G487807
XM_021605783.2 mRNA downstream 17991 24032069 ~ 24041920 (-) False LOC110525567
XM_021605784.2 mRNA downstream 17991 24032069 ~ 24041920 (-) True LOC110525567
XM_021605785.2 mRNA downstream 27912 24024546 ~ 24031999 (-) True LOC110525568
XM_021605782.2 mRNA downstream 87638 23970088 ~ 23972273 (-) True LOC110525566
XM_036979693.1 mRNA downstream 111408 23943886 ~ 23948503 (-) True LOC110525565
LOC110525317 mRNA upstream 909 24072614 ~ 24079048 (-) True LOC110525317
XM_021605795.2 mRNA upstream 57695 24129400 ~ 24182417 (-) False dtx1
XM_021605790.2 mRNA upstream 57695 24129400 ~ 24184369 (-) False dtx1
XM_021605792.2 mRNA upstream 57695 24129400 ~ 24184369 (-) False dtx1
XM_021605794.2 mRNA upstream 57695 24129400 ~ 24184369 (-) True dtx1
TU554111 other downstream 342128 23713875 ~ 23717783 (-) True LOC110525552
TU554033 other downstream 474357 23583036 ~ 23585554 (-) False LOC110525180
TU554039 other downstream 474357 23583036 ~ 23585554 (-) True LOC110525180
TU553494 other downstream 667849 23390017 ~ 23392062 (-) True G487016
TU553500 other downstream 674004 23385534 ~ 23385907 (-) True G487022
TU555138 other upstream 281828 24353533 ~ 24353823 (-) True G488386
TU555289 other upstream 589192 24660897 ~ 24674901 (-) False LOC110525585
TU555288 other upstream 634866 24706571 ~ 24709420 (-) False LOC110525585
TU555826 other upstream 1034500 25106205 ~ 25106570 (-) True G489038
TU556319 other upstream 1425258 25496963 ~ 25497489 (-) True G489511

Expression Profile