RNA id: XM_021606015.2


Basic Information

Item Value
RNA id XM_021606015.2
length 2288
RNA type mRNA
GC content 0.48
exon number 14
gene id dbnlb
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 28430078 ~ 28448183 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTTGCTGGAAGGCGAGCTTCCGGTGTGCTGAGATCTCAATCAGAAGTCAATTCGATTCGGTTTTACCGCCTCTCCTCCGTGAGTAGGACGGGCTTATCACGGCAATACACAACTGTTTCAGTGACTGAACGATGGCAGTGAACCTAAGCAAAAATGGCATTGCCCTGACAAATGCCTACAAGGAGGTGGTAGATGAGAAATCCAACACCAATTGggcATTGTACACCTACGAGGGGAACACTAATGATATCCGATTGGCAGAGAAGGGAGATGGTGGACTGGAGGAACTGGTGGAGGAACTTAGCAGCGGGAAAATTATGTACGCGTTCTGTCGTGTCCAGGACCCAAACTCTGGCCTGTGCAAATATGTCCTCATCAACTGGACTGGAGAAGGTGTGAAAGATGCCCGGAAAGGACTATGTGCCAATCATGTCAGCTCCATGGCAAATTTTCTCAAGGGCGCCCATGTTACAATAAATGCCCGTGCAGAGGAGGATGTGGAACCTGAGGCTATTATGCAAAAGGTGGGCAAGGCCTCGGGGGCCAACTATAGCTTCCACAAAGAGTCCAACAAGTTCCGAGACGCTGGTCCCCAGGGACCTGTGGGCTCTGTCTATCAGAAGACCAACGCTATGTCTGAAATCAAACGCACCAATAAAGACAACTTCTGGGCGCAGGCAGAGAAAGATGAGGAGAAGCGGCGACAGGAGGAGCGCTGCAAGGCAGACGAGGAGCGCCAGAAGCTGGAGAAAGACAGGAAGGATCGAGAGGCCAAGGAGGCAActctcagagagaagagagacaaggaaagggcCTCTATGATCGACCAGCAGAAGAAGTACCAGCAGCAGCAGGAAGCTGAGAGCAGAGAAGATGAGAAACAACAATGGgaggagcaggagaaggacTTCCAGGCAACTCAGAAGAAAGGGATGAAGCGTGGTGTATCTGTGGAGAAAGCCAATGAGGCAGCCAATCTGATCTCTCAGCGCTCTATGAACCCCAGAGAGATGttcaagcagagagagaagggcatgGACACCCCTGCTGCTGCCCACGCCACTTCCAGCccccagccagAACCCAGTGTGGATGAGCTCGTTGTGGATGAGTCATCCCAGTCTGAGTGCTTGGATGAGCAGGATGCAACCCCTGTTCAGGATGCAGTCCCTGAGGAACAGTGGCAAGATGAAGTGAAGGCACCAGCTCCTCCCACTCAGCACAACCATCCCACAGAGCCAGCCCAAAATGATCTCTATGAGGAGCCCCCACAGGTGGAAGAGAACACATTTGAGGTGCCTGCAGGGGAGAAGACGGACCGAGGTGTCTGTGCCAGGGCTCTATACGACTACCAGGCTGCTGATGACACAGAGATCTCCTTCGATCCTGATGACATCATCACTGGCATCGAGATGATTGACGAGGGCTGGTGGCGGGGCTACAGCCCAGACGGGCATTTTGGAATGTTCCCAGCCAATTACGTGGAGGTTATTTAGGTCCATACCTCGCCCACTCACTAGATCAGCATATTGGAGGCAGAATAGaaaagatcccccccccccccccccagaagaaTTTGGCAGTAGGAAAAGTGCTTGGTCCAGAACTCAGCAGGTCAGAAGTAACTCAACAGTGAACCCTTTAGAATAGTTTGCTGAACTGTATCTGCCACATTATGGACCAATATATGAACAATAACCATGGGACCAGGGGTCGCGCAAATCTATCCCTGTTGAAGGAAGCAATTCAattatgttgttgatgttgtgaGCCGTTAGATGGCATAGTTTAGGTTTTGATGAAAACCCATATACTGGCCAACCCCAAACTGAATCTCTCACCTTTTAATGTGATGCAGTAAATTGTCAGGCTTTTTAGATTTTTCAATTCAAGTTTCCATTGCGAACATTAATTGCACTTGTAGATCACATTCCTTAAAAAGTGAATCCAGTTTTGTTCCAGATATactatttttgttatttgtagCATTCACTCCTGTTGGGTTCAGGATAATATTTCATAGCTCACATAATGGTACCAACTATGATCtttggcctttttttgccttttccTCAGACTAATATTTTATGTGAGTATTTCTTTGTCAGAAATGATTTTGCTTGAAAGGAATCCTGTGTGAATTTCCAACAGTAGTTTGGTATTGCAGTGGAATTGAATATTAGAAAACCAAAAGGTTCTATATTTGCTATGCTCTCTGGGTGGCTGAACTTGAGGGAAAATAGGGGTGTAAATAATGACAATCATATTCTTGTGAAATaactgtatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU560145 lncRNA downstream 6390 28425764 ~ 28425969 (-) True G492986
TU560141 lncRNA downstream 23080 28409065 ~ 28409279 (-) True G492982
TU560138 lncRNA downstream 26035 28406044 ~ 28406324 (-) True G492979
TU560057 lncRNA downstream 30106 28401868 ~ 28402253 (-) True G492902
TU560122 lncRNA downstream 52447 28379660 ~ 28379912 (-) True G492963
TU560153 lncRNA upstream 3309 28451490 ~ 28451787 (-) True G492994
TU560160 lncRNA upstream 21807 28469988 ~ 28470245 (-) True G493001
TU560206 lncRNA upstream 66734 28514915 ~ 28515918 (-) True G493040
TU560226 lncRNA upstream 91395 28539576 ~ 28539825 (-) True G493053
TU560241 lncRNA upstream 116198 28564379 ~ 28565133 (-) True G493062
XM_021606011.2 mRNA downstream 7134 28414737 ~ 28425225 (-) True arid5a
XM_021606012.2 mRNA downstream 10745 28414737 ~ 28421614 (-) False arid5a
XM_021606009.2 mRNA downstream 17886 28403084 ~ 28414473 (-) False LOC110525671
XM_021606008.2 mRNA downstream 17886 28411741 ~ 28414473 (-) True LOC110525671
XM_021606003.2 mRNA downstream 62343 28356038 ~ 28370016 (-) True LOC110525668
XM_021606018.2 mRNA upstream 7409 28455590 ~ 28467805 (-) False ube2d4
XM_036979778.1 mRNA upstream 7409 28455590 ~ 28467865 (-) True ube2d4
XM_036979787.1 mRNA upstream 104083 28552264 ~ 28554391 (-) False zgc:153044
XM_021606020.2 mRNA upstream 104083 28552264 ~ 28555593 (-) False zgc:153044
XM_036979786.1 mRNA upstream 104083 28552264 ~ 28556013 (-) True zgc:153044
TU559292 other downstream 597057 27827231 ~ 27835302 (-) False LOC110525655
TU559251 other downstream 695381 27734996 ~ 27736978 (-) True LOC110525653
TU558571 other downstream 1188166 27216607 ~ 27244193 (-) True G491539
TU558306 other downstream 1565201 26824867 ~ 26867158 (-) True G491291
TU557799 other downstream 1880732 26547222 ~ 26551627 (-) True LOC110525619
TU561692 other upstream 963034 29411215 ~ 29415314 (-) True G494389
TU561696 other upstream 1030474 29478655 ~ 29483346 (-) True LOC110525681
TU561743 other upstream 1054072 29502253 ~ 29503391 (-) True LOC110525684
TU561865 other upstream 1227142 29675323 ~ 29675573 (-) True G494542
TU562998 other upstream 2078505 30526686 ~ 30527546 (-) True LOC110525714

Expression Profile