RNA id: TU566309


Basic Information

Item Value
RNA id TU566309
length 2241
lncRNA type sense_over
GC content 0.42
exon number 3
gene id LOC110526890
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 33298669 ~ 33313304 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGACGTGCGAATTTGGCGTGATATTTCCTCAAGGAACTGTTGGGCATGCAACAAAAAAGCTCCTGGTGTTTCAACTTGAGCTCAAAGAACAAATAGCGcatagctatatatatatattttttatgaaaCCTCACGAAAATAGTGTGAAATGTTTATTGCGGACATAAGAAAGGAATTCTACGACATTGTGGTCAACCAGAGAATTGCTCTCCTGGTGTCATCGGATATCGATGCACTCTGCGCCTGTAAGATGTTACAGGTGAATTAGAGCCCTTTCGTTTGCTGTCAAATAAGTTAACTTTCTGacatagctgcactgtttgttgTCAACTGTTCTGCTGCATAGTTGTGTAATTCAAATGTATTCTGATTGCTTCTTACACCACCCTCTACACAGGCACTGTTTCACTGTGGCTAGGTCCAGTACACCTTGGTGCCAGTGACAGGGTGGCAAGACCTTGGTACTGCCTTCCTAGAGCACAAGGAGCAGGTAGTGTGACACTCCTGTCCAGTCCTGATAGCCCTGGAGTTAATCGTATGGTGTCAAATATGACTATCAAGAACACAAACATCTATGACAGgtgaaGCTGATGATAAAGCAGGATGATGGCCTTGGAATGCCCTCCTATGACAACATCTTCCACGATGAAAAGAAAGGCAGCGAGGACTGGGAATAAGAGTGATGGAGGCTCAGTGCCTTCTGGGAAACGGAGACGATGCGATGACGTATTACCATATTGATGTCACAAAAGTTATGACAAAGAAATATACCCTCTATTTATCCCATCCAAACTCTACGTAAATAACCATTTGAGCCAAGGTGGATCTTTCTCATATTTATGGttcttatttttaaaaaaatgtccgGTGTAATTTGATTTGTGTGTATGACAATGATTCCACAAATAGCGGACAAAGCCGATCATATTGCAGTGATGTATTGCTATTTATACCAACATGTTCCCATGTTTTAGGGGGCAGTGGAGAGAAGGATAGAGCGAAGGAGATGGTTCTTTAGAGTTTTAAAAGTTTAAATAGTAATGATATTGTGCCTTTTTTAAAACTTTCATTTCAGACGCGAGATCCTGTTTGACTATGAGCAATATGAATACCGTGGAACTTCAGTGAGTATGGATTATATATTGATTATGTTGAAACTGGGTCCTCTCTATCTAATCCTCACAgcatcagtcaaaagtttggacacacctaatcattcaaggggttttctttatttttactattttctatattgtataataatggtgaagacctcaactatgaaataacacatggaatcatgtagtaaccaaaaagggttaaacaaatcaaaatatattttggataattcaaagtagccaccctttgccttgtcgacagctttacacacttggcattctctcaaccagcttcacctgcaatgcttttccagcagccttgaaggagtttccacatatgcagagcacttgttggctgcttttccttcactctgtggtccaactcattccaaaccatctcaattgggttgaggtcaggtgattgtgcaggccaggtcatctgatgcagcactccaccactcttcttattggtcaaatagcccttccgCAGCCTGGAAGTATgttcggtcattgtcctgttgaataacaaatgattgtcccactaagcgcaaaccagatgggatggtgtatcgctgcagaatgctgtggtagctatgctggttaagagtgccttgaattctaaataaatcactgagtgtcaccagcaaagcaccattacACCTcaaccatgcttcacggtgggaaccacgcatgcagagatcatcagttcacctactctgaaaGATGAACGCAGCAAAGTACAGAGTTCCTTgataaacctgctccagagcgcttaggacctccagactggggtgaaggtacaccttccaacaggacaacgaccctaagcacaaagcaggagtggcttcgggacaagtctctgaatgtcattgagtgttCCAGCCAGAgccctggacttgaacctgatcgaacatctctggagagacctgaaaaaagctgtgcagcaacgctccccatccaacctgacaaagcttgagaggatctacagataagaatgggagaaaccccttcaaatacaggtgtgccaagcttgtagcattatacccaagaatactcaaagcaaaaacaggtttagacatttttgctaatttattaaaaacagacatctgggccactcaagga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU566288 lncRNA downstream 115 33305597 ~ 33309502 (-) False LOC110526890
TU566276 lncRNA downstream 811 33304979 ~ 33308806 (-) False LOC110526890
TU566282 lncRNA downstream 811 33305597 ~ 33308806 (-) False LOC110526890
TU566289 lncRNA downstream 811 33307300 ~ 33308806 (-) False LOC110526890
TU566369 lncRNA downstream 20780 33283582 ~ 33288837 (-) True G498503
TU566351 lncRNA upstream 7138 33320257 ~ 33321907 (-) True LOC110525810
TU566382 lncRNA upstream 35409 33348528 ~ 33348859 (-) True G498516
TU566352 lncRNA upstream 46731 33359850 ~ 33364334 (-) True G498486
TU566386 lncRNA upstream 55842 33368961 ~ 33369198 (-) True G498520
TU566388 lncRNA upstream 60616 33373735 ~ 33374130 (-) True G498522
XM_036979948.1 mRNA downstream 31418 33227813 ~ 33278199 (-) True LOC110525804
XM_036979949.1 mRNA downstream 31448 33227813 ~ 33278169 (-) False LOC110525804
XM_036979950.1 mRNA downstream 39195 33227813 ~ 33270422 (-) False LOC110525804
XM_021606241.2 mRNA downstream 81962 33213385 ~ 33227655 (-) True LOC110525803
XM_021606240.2 mRNA downstream 89974 33213385 ~ 33219643 (-) False LOC110525803
XR_002473829.2 mRNA upstream 7134 33320253 ~ 33321856 (-) False LOC110525810
XM_021606250.2 mRNA upstream 19533 33332652 ~ 33336818 (-) False LOC110525812
XM_021606251.2 mRNA upstream 23884 33337003 ~ 33344085 (-) True LOC110525813
LOC110526891 mRNA upstream 256886 33570005 ~ 33576547 (-) True LOC110526891
XR_005052409.1 mRNA upstream 276737 33589856 ~ 33593095 (-) True LOC118965076
TU565305 other downstream 626770 32680042 ~ 32682847 (-) True LOC110525784
TU564492 other downstream 1416968 31843463 ~ 31892649 (-) True G496851
TU564405 other downstream 1637690 31670978 ~ 31671927 (-) True G496777
TU564400 other downstream 1647999 31661393 ~ 31661618 (-) True G496772
TU563022 other downstream 2734044 30575118 ~ 30575573 (-) True G495560
TU566350 other upstream 14388 33327507 ~ 33330504 (-) True G498484
TU566347 other upstream 19531 33332650 ~ 33336780 (-) True LOC110525812
TU566881 other upstream 727240 34040359 ~ 34041174 (-) True G498960
TU569190 other upstream 2452247 35765366 ~ 35767929 (-) True G501142
TU570258 other upstream 3194937 36508056 ~ 36517268 (-) True hk2

Expression Profile