RNA id: TCONS_00032056


Basic Information

Item Value
RNA id TCONS_00032056
length 3284
RNA type mRNA
GC content 0.45
exon number 3
gene id XLOC_016261
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 16365768 ~ 16380283 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CACGAGCGCGCTGACAGCCAGAACATCCTCTCCTGTCACGCGCGCGCGATAACCACCAGCTCCCGCCAAACGCCTTCTGTCACAATCTGCTGCAGTTACAGTTATGTATATGAAAACATGGAGCTGTCAAAGAGCGAAGATTCTTCAGACAATCGGAAGAGGTCAAATGAGGCACATGGCCGAAGTAAACAGCCTGATGAGCACACATCAAAAATCACCATGAATAATGGATTTGTGAATGAACACAATACTGATGAAAGCCCATCCTCACTGCCTAAGCCAGATATTCTCTTTCCAGGGGTGAGTGACACACTCTCAGAAGGTCACAGACACCTCTGTAGCTCTGTTACAAGGAGCAAAACTCATGATTGTGTCAGAGGACTGGGACTGCAGCAAGCCAAGAACTCTGAATACAAAGATGGGACCAGCTGGCGCCATCACCAGAAGCTGCTGACCAGTGTCAGCTTTCCAGGATTTGAGACGCCTCTTAGGTTGCTTCGTGAAACTCAGGATACATCTGGCAGCAGTCATGAAATCGATGATTATCGTAACCTTACACCTCAAGTGCCCTTTGTGCCCTGCATAGGCAAATCCATTCCAAAAAGGAGGAGATCTCTGAGGAAACCTAGGAAGGCCATTAAGGATTTGTTTGTTCACAAAAGTTACAAACACGAGAAAGCTACACCACCAAGTACACCAAGTCGTGTTTTTGGTGAAAATGCTACAATATTAATGCGGATAAGAAAAGCAGCAAGACACAGAGAGTGTAGCACTGCAGGAAGCAGGTGTAATGATGAACTCAGTGAGACGCCCTCTGATTCTTCCAGTGAATCTGGTCCTAATGTCTGCGAGGATGCCGTCTCGTTAAAAAGCTTTGGATCTCAGGCTGGTTGTGGTGAGATATTTGCTGATGATCTTGTATCGCCTGATGGGGTTCTTAACTCTCAGCATGACAGAGTTGCTTGTGGAACTCCAAAGCAAAGTCCTACTACTTTGGGCATCCAGGGAGGTACTGAGTGTCTGGCCTCTCCAGCCAACGCTGAGGTACTGGACATGTTTGGGTTGTGGGAAACTTTGAACAGAACTTTGCTTTCAGAGCAAAGTTTAAAAGCAATGGGACCAGCAACAAAACACACAGCACCGATCACTATATCTCCTTCCACAACCAATTCTGCAGATATAACAGTCAGTACACCCCATCCTGTAGAGCCAGAGATCAAGGAACTTAATGCTAAAGTGATGACACCCAAAAGTGACAACCAAGGGAACACCAGTGATGAGGGCTACTGTGATTACGTTTCTCCTGGTTATGAGGACCACAGCAAAAGTTCCTTTTCTCCAGTGCATTCCAGCAAGATCCCTAGAGACACGTACAGTGGAGATGCTCTTTATGAGCTATTCTGTGACCCCAGCGACGCAGAGATAACCCCAATATGTGATGATGAGATTGATCTAACAGACAGCATTGTTGGCCAGTGCAGTGATCTTCCATTATCCATGTACAGCTTCCGTGTTGGAGCAGAGGAGAATCTTGCCCCATCTTTGGCTCGGGACTTTGTTGGGCAGGAACTCCTGGAAAGTAAATGGATGGGGAAGGATTGCTTACTAAAGCTTTGTGACACTGAGATATCTCTGGCTATGGGTGTAGTTAACTGGCTAAACCAAAAGACAGACAAAAGCAACCCATCAGAACTGAAATCTTCACAGACGAGTGGTGAAGAAGGTGGGGATTTATGTCTGAGATGCAAAAGTAAGTCAGAGAGGGTTAGAAGACCTCCAAGAAGAGTAAGAACTGTTAATAGCATTAGAGATGCAGCTAAATTCAAAGAGCCAAGTCAGCGAGGTGTACGTGTTCTGCCCTCAAAATGTGATACAAACACAGTGATGTCATCCCTGGACTCTCCTCATAGTCAGCCCAATACCCCAACAAGTGGCGTGTGTTTCAGGATATTCAATATCGGCTCTCCTATGACTCCAGGTGGAGATTTGCAGTCCCCGGTGGTAAGCTCCCCTGGCTCTGGGACAAGGTCTTTGTTTGTGTTGGCCATAAACAAGGAATCTCTTTGTGAATCTTGCAAGAGTTCCCTGAAAAACGGAGCGAAAGACTTGCACCTGTGCCGTTCTTGTATGTCCCTCATTGAGCACATCAAGACTTCAGACCTTTGGGCCCGTTCCAGTTTTCCCAAGTCCACTCTAACTCCACAGCCAATTACCCAAGACTTACTATCTCCCGCCAGCACATGTGGAATAGGAAGTGACATCAGTATAGCTTCCCTTGTTGAGCAGTGTGCCAGTCAGTTTTCTTCTATGAAGATCAACATGACTCAAGCTCACCCAAGAGAGATAAGAGATGCTGTTGTGCCTGAGCAGGTGGTAAAAAGGAACAAAGACCACTCTCAGAAATACCTAAAGTCAACGCACAAGAGAAGGCCAGTGGCAGCTACAGAGAAAGGCTTGCATGCTAGACACCGCTTGAGTAGATCTAGCTTTTCTGAAGATGTGAAACGTTCTCTTTTGGATGCTGGAGGACTTGGCTTTGTCTCTACCAGTCCTTCTAATGATTTGGTATTGGAAACATACACTCCATGTACTGTTGAATCTGTTGACACGGATGTATCTCAAGCAACCAGGCCTACATCTCTTCCTCTTGTGGCGTCTTCTGAATTTTCTTGCAGAGAGGGCTTGATGAAGATAGAAGGGGGAAACTCAGCCAAGAAGACAAATAAGTCACGACATCGCAAGAAGTCTGCTGTGAATCATGAGGGATCATGCAGTGGCTTTCCAGGGGACAGGAAAGTGGAACGCAGATCCAGAATGAAGAAGGGAAACGTATAATAAACAGATTTCTTTTCTTTCTGCATCCCGACTGTCTTAAAGTGGTTTCTTCAGTCCAGTACCTCAGTCCTCCGGGCAGCTGACCTCTCTACCAGCTGTCAAACTCTTTATCGTTCATCCTCAAGAAATCTGACATGTTTGCTCTTTTTACAGTCAACTCAGCGACACTGTCAGCCTGGGAACAACAACAGGTCTGTTGATCTGAAAAGTGACATTTGTCTTAAACTGTCGTATCAGTGTTTTTCACTCTCCAGAAGTGTTTCTGCAgtcactgctgttttttttttttttaaaccaaggaTCAATGACTGTACATACTGGTGCAATAACTACAGTATCACTTTATTACTGTCATAGAGACTAGCaagaaaacataactattttaggTATTGTTAGAAAAGTGTCTAATTCATATGTAAACGTATATGATTTTTCAAATAAGGTGTGCT

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000149992

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033795 lncRNA downstream 147670 16215095 ~ 16218098 (-) False XLOC_016260
TCONS_00032050 lncRNA downstream 338429 16021657 ~ 16027339 (-) True XLOC_016259
TCONS_00033794 lncRNA downstream 715178 15637219 ~ 15650590 (-) True XLOC_016258
TCONS_00033793 lncRNA downstream 1401549 14962493 ~ 14964219 (-) True XLOC_016248
TCONS_00033358 lncRNA downstream 1416142 14933798 ~ 14949626 (-) True XLOC_016246
TCONS_00032058 lncRNA upstream 7686 16387969 ~ 16393313 (-) True XLOC_016262
TCONS_00032062 lncRNA upstream 122497 16502780 ~ 16505996 (-) False XLOC_016263
TCONS_00032061 lncRNA upstream 122497 16502780 ~ 16506010 (-) False XLOC_016263
TCONS_00032060 lncRNA upstream 122497 16502780 ~ 16506457 (-) False XLOC_016263
TCONS_00032059 lncRNA upstream 122497 16502780 ~ 16506795 (-) False XLOC_016263
TCONS_00032053 mRNA downstream 6726 16198735 ~ 16359042 (-) False XLOC_016260
TCONS_00032052 mRNA downstream 110986 16198735 ~ 16254782 (-) False XLOC_016260
TCONS_00032054 mRNA downstream 141685 16199584 ~ 16224083 (-) False XLOC_016260
TCONS_00032051 mRNA downstream 148424 16198735 ~ 16217344 (-) False XLOC_016260
TCONS_00032055 mRNA downstream 149200 16216407 ~ 16216568 (-) True XLOC_016260
TCONS_00032057 mRNA upstream 4002 16384285 ~ 16449504 (-) False XLOC_016262
TCONS_00032066 mRNA upstream 167423 16547706 ~ 16565690 (-) False XLOC_016266
TCONS_00032067 mRNA upstream 168073 16548356 ~ 16562505 (-) False XLOC_016266
TCONS_00032070 mRNA upstream 505002 16885285 ~ 17044959 (-) False XLOC_016268
TCONS_00032071 mRNA upstream 530274 16910557 ~ 16986894 (-) False XLOC_016268
TCONS_00032040 other downstream 1258052 15102103 ~ 15107716 (-) True XLOC_016253
TCONS_00032037 other downstream 1332647 15028646 ~ 15033121 (-) True XLOC_016251
TCONS_00032033 other downstream 1371278 14994393 ~ 14994490 (-) True XLOC_016250
TCONS_00031998 other downstream 3110971 13252152 ~ 13254797 (-) True XLOC_016221
TCONS_00031991 other downstream 4141229 12224423 ~ 12224539 (-) True XLOC_016216
TCONS_00032063 other upstream 128541 16508824 ~ 16512422 (-) True XLOC_016264
TCONS_00032069 other upstream 235657 16615940 ~ 16616055 (-) True XLOC_016267
TCONS_00032073 other upstream 563989 16944272 ~ 16944391 (-) True XLOC_016269
TCONS_00032082 other upstream 959135 17339418 ~ 17392808 (-) False XLOC_016272
TCONS_00032083 other upstream 973548 17353831 ~ 17392719 (-) True XLOC_016272

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000004_04786239_04788953.mRNA True 2723 mRNA 0.46 1 CI01000004 4786239 ~ 4788961 (+)