RNA id: TCONS_00032058


Basic Information

Item Value
RNA id TCONS_00032058
length 770
lncRNA type retained_intron
GC content 0.48
exon number 5
gene id XLOC_016262
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 16384285 ~ 16449504 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTCAACTGCCTCATTAATAAGGTAGCGGGCCCATGCTGTTTAGGAAATGACCAAATTATTTTCATGAGAAATTGGCCAGTAAAAATGTGCCTTTGTCAGTCTTTGAGGAAAGATGCCGAGTCTAGACGGAGGGATTTGCGCATTCGGACGTACGCTGTGATCCCTCTAAATGAAGAGTGCGGAATAATCGAGTGGGTGAACAAAACAGCAGGCTTACGCCACATCCTCACGAAACTGTATAAAGAGAAAGGGATCTATGTCAGTGGGACAGAACTGAAGAAGCTCATTTTGCCAAAAACAGCACCTTTTCAGGAGAAGCTGAAGCTGCACAAAGATGTGCTGTGTGCCAGACACCCTCCAGTGTTTCATGAGTGGTTCCTGCGGACCTTTCCTGATCCCACCTCTtgGTACAACAGCAGGTCTGCGTACTGCCGCTCTACTGCCGTCATGTCGATGGTGGGTTATATCCTTGGACTCGGAGATCGACATGGAGAAAACATTTTGTTTGATTCTTTTACCGGCGAGTGTGTCCATGTGGATTTCAACTGCCTTTTCAACAAGGGGGAGACGTTTGATGTTCCTGAGGTGGTTCCTTTCCGGCTCACCCAGAACATGGTTCATGCAATGGGGCCCATGGGTACAGAGGGCCTGTTCAGACAGGCGTGTGAGGTCATACTAAGACTCATGAGAGACCAGCGGGAGCCGCTCATGAGCGTTTTAAAAACATTCCTGCACGATCCTTTAGTGGAGTGGAGTAAACCTGTGAAGG

Function

GO:

id name namespace
GO:0000077 DNA damage checkpoint biological_process
GO:0003140 determination of left/right asymmetry in lateral mesoderm biological_process
GO:0060271 cilium assembly biological_process
GO:0008630 intrinsic apoptotic signaling pathway in response to DNA damage biological_process
GO:0000723 telomere maintenance biological_process
GO:0016310 phosphorylation biological_process
GO:0035469 determination of pancreatic left/right asymmetry biological_process
GO:1901207 regulation of heart looping biological_process
GO:0005634 nucleus cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG:

id description
ko03460 Fanconi anemia pathway
ko04110 Cell cycle
ko04214 Apoptosis - fly
ko04115 p53 signaling pathway
ko04218 Cellular senescence
ko05166 Human T-cell leukemia virus 1 infection
ko05170 Human immunodeficiency virus 1 infection
ko05165 Human papillomavirus infection
ko01001 Protein kinases
ko03400 DNA repair and recombination proteins

ZFIN:

id description
ZDB-GENE-070912-458 Predicted to enable protein serine/threonine kinase activity. Acts upstream of or within several processes, including determination of left/right symmetry; intrinsic apoptotic signaling pathway in response to DNA damage; and regulation of heart looping. Predicted to be active in nucleus. Is expressed in hindbrain neural rod; midbrain neural rod; optic vesicle; somite; and tail bud. Human ortholog(s) of this gene implicated in Seckel syndrome 1 and pancreatic cancer. Orthologous to human ATR (ATR serine/threonine kinase).

Ensembl:

ensembl_id ENSDART00000134375

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033359 lncRNA downstream 11551 16366074 ~ 16376418 (-) True XLOC_016261
TCONS_00033795 lncRNA downstream 169871 16215095 ~ 16218098 (-) False XLOC_016260
TCONS_00032050 lncRNA downstream 360630 16021657 ~ 16027339 (-) True XLOC_016259
TCONS_00033794 lncRNA downstream 737379 15637219 ~ 15650590 (-) True XLOC_016258
TCONS_00033793 lncRNA downstream 1423750 14962493 ~ 14964219 (-) True XLOC_016248
TCONS_00032062 lncRNA upstream 109467 16502780 ~ 16505996 (-) False XLOC_016263
TCONS_00032061 lncRNA upstream 109467 16502780 ~ 16506010 (-) False XLOC_016263
TCONS_00032060 lncRNA upstream 109467 16502780 ~ 16506457 (-) False XLOC_016263
TCONS_00032059 lncRNA upstream 109467 16502780 ~ 16506795 (-) False XLOC_016263
TCONS_00033796 lncRNA upstream 112328 16505641 ~ 16506420 (-) True XLOC_016263
TCONS_00032056 mRNA downstream 7686 16365768 ~ 16380283 (-) False XLOC_016261
TCONS_00032053 mRNA downstream 28927 16198735 ~ 16359042 (-) False XLOC_016260
TCONS_00032052 mRNA downstream 133187 16198735 ~ 16254782 (-) False XLOC_016260
TCONS_00032054 mRNA downstream 163886 16199584 ~ 16224083 (-) False XLOC_016260
TCONS_00032051 mRNA downstream 170625 16198735 ~ 16217344 (-) False XLOC_016260
TCONS_00032066 mRNA upstream 154393 16547706 ~ 16565690 (-) False XLOC_016266
TCONS_00032067 mRNA upstream 155043 16548356 ~ 16562505 (-) False XLOC_016266
TCONS_00032070 mRNA upstream 491972 16885285 ~ 17044959 (-) False XLOC_016268
TCONS_00032071 mRNA upstream 517244 16910557 ~ 16986894 (-) False XLOC_016268
TCONS_00032074 mRNA upstream 702848 17096161 ~ 17115256 (-) False XLOC_016270
TCONS_00032040 other downstream 1280253 15102103 ~ 15107716 (-) True XLOC_016253
TCONS_00032037 other downstream 1354848 15028646 ~ 15033121 (-) True XLOC_016251
TCONS_00032033 other downstream 1393479 14994393 ~ 14994490 (-) True XLOC_016250
TCONS_00031998 other downstream 3133172 13252152 ~ 13254797 (-) True XLOC_016221
TCONS_00031991 other downstream 4163430 12224423 ~ 12224539 (-) True XLOC_016216
TCONS_00032063 other upstream 115511 16508824 ~ 16512422 (-) True XLOC_016264
TCONS_00032069 other upstream 222627 16615940 ~ 16616055 (-) True XLOC_016267
TCONS_00032073 other upstream 550959 16944272 ~ 16944391 (-) True XLOC_016269
TCONS_00032082 other upstream 946105 17339418 ~ 17392808 (-) False XLOC_016272
TCONS_00032083 other upstream 960518 17353831 ~ 17392719 (-) True XLOC_016272

Expression Profile

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