RNA id: TCONS_00032070


Basic Information

Item Value
RNA id TCONS_00032070
length 3380
RNA type mRNA
GC content 0.52
exon number 25
gene id XLOC_016268
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 16885285 ~ 17044959 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGCGCGTGACCGAGCGCCCCAGCGCGTGCTTCAGTACCAGCAAACTCTGATGTATGGACGCTATACACAGGAGCTGGGGGCCTATGCCAAAGAAGAGGCAGCTCGTCTGCGTGAGGATGGAGGGCTGCGGAGGACCACCAGCGTTCGCGGCCAGGCTCCAGAACTGCTGGAGTATGAGAAAGACCCATGTGCCAAGTGTCAAGTCTGTACATCACGCTGTAAGAAGTTCCTGATCTCCCGTGTGGGTGAAGACTGGATCTTCCTTATCCTCCTGGGGCTTCTCATGGCACTGGTCAGCTGGGCTATGGACTACACTATTGCCTTCTGCCAGCAAGCACAGAAGTGGATGTACCGCGGTCTGCACAGTAACATGTTGCTGCAGTATCTGGCCTGGGTCACGTACCCAGTGGTCCTCATCACCTTCTCCGCCGGCTTCACACAGATCTTGGCGCCACAGGCAGTGGGCTCTGGGATCCCAGAGATGAAGACCATCCTCCGAGGTGTGGTGCTGAAAGAGTACCTCACTTTCAAAACCTTCGTCGCCAAAGTGATTGGCTTAACTTGTGCCCTTGGAAGTGGCATGCCTCTGGGCAAAGAGGGACCGTTTGTTCACGTTGCCAGTCTGTGTGCTGCTCTGTTGAGCAAATTCATGGCCTTGTTTGGAGGAATCTACATGGAAGAGCCCTTTGAGGGAAACAAGAACGAGCTGAGAAACACAGAGATGCTGTCAGCTGCCTGTGCAGTGGGGGTGGGCTGTTGCTTTGCGGCCCCCATTGGAGGAGTGCTGTTTAGTATTGAGGTCACATCAACGTTCTTCGCCGTGAGGAACTACTGGAGAGGATTCTTCGCTGCAACCTTCAGTGCCTTTATCTTCAGGGTGCTGGCGGTGTGGAATAAGGATGAGGAGACCATCACGGCCCTCTTTAAAACACGCTTTCGACTGGATTTTCCTTTTGACCTACAAGAGCTTCCTGCTTTCGCTGTGCTCGGGATTGCCAGTGGTTTTGGAGGAGCATTGTATGTCTATCTGAACAGGATTATAGTGGAGTCTATGAGAAAGCAGAAAACTATCAACAAATTTTTGCTaaaaaaAAGACTAGTGTATCCAGCAGTGGTGACTCTTCTTATATCAACACTTACCTTTCCTCCAGGGTTTGGACAGTTCATGGCAGGCCAGCTGACTCAACATGAGTCACTGGTGGCACTGTTTGACAACCTGACCTGGTACAAGCAAGGTGTTGCTGAGGAGTTTGAGTACTCAAGTCACGTACCTCAGGCCTGGAAGCACCCACAAGTCAGTGTGTTTATCACACTCCTCCTCTTCATTGTCATGAAGTTCTGGATGTCAGCCGTGGCTACAACAATGCCTGTGCCTTGCGGGGCCTTCATGCCGGTGTTCCTCATTGGGGCCGCATTCGGTCGACTGGTGGGCGAAAGTATGGCAGCCTTCTTCCCCGACGGGATACACGCCGACAGCACTGTGTATCCTATAGTTCCCGGCGGTTACGCAGTTGTAGGGGCGGCGGCTCTTTCTGGCGCAGTCACTCACACCGTGTCCACCGCCGTCATCGTGTTCGAGCTGACCGGTCAAATCTCGCACATCCTGCCCGTGATGATCGCTGTGATCCTGGCCAATGCCGTGGCTCAGAGTCTACAGCCGTCCCTCTACGACTCCATCATCCGGATCCAGAAACTTCCCTATCTGCCAGAGCTGGGCTGGGGACAGGAGAAATATAATATCCGCGTGGAGGATATAATGGTGAGAGATGTGCGCTATATCACTCTCTCCTCCTCTTACCGGGACCTCCAGGAGGCACTTGTGACGGGCCAGCTTAAAACCCTGGCCCTCGTCGAGTCCAAAGAGTCCATGATCCTGCTGGGTTCGATCGAGCGCTCTCAGCTTCAGTCGCTGCTCTCTCAGCAGCTCGGCCGGCCCCGCAGGCTGGAGTATCTGAGAGAGCGagcacaggacaacggcacccaTGTGCCCACCTTCACACCGGATTCACCTCCCAAGGCTGGCCGCGGCGTACGTTTCCTGATCTCCACTGAAGAGTCCTCCTACAGCCCCACGTTGACTAACTCCCAGATCCCCCTCAAGTCTGCTCTGAAGACGGTGTCTGCAATCAGCAACACAGACTCACTCAACAGCTCTCCAAACCTCTCCTGCGGGGAACCTGTGAAGGAGCTAGTGGAGAGCAATGCTGGCCCCATGGCTCCTAAGAGGAGCAGGAGGCCCAAGCGCGTGAAGATACCCATGGCGGATACAGCTGATGTTGAAGATGACATGTCAACAGCAGAGaTTGCCGAGTGGGAGGAACAACAGTTGGATGAAGCTGTCAATTTTAACAACTGTAAAATAGACCCCGCTCCCTTTCAGCTAGTGGAACGGACATCATTACATAAGACACACACCATTTTTTCACTTCTTGGCCTGGATCATGCCTATGTCACCAGCACCGGACGTCTAGTAGGAGTCGTCTCTTTGAAAGAGCTACGTAAGGCCATTGAGGGCTCAGTAACCGTAACTGGTGTAAAGGTGCGTCCTCCGCTGGCTAGTTTCCGGGACAGTGGCAACAGCAGCAGCGTCTCGGAGGTCACTGAGCTCCACAAGCTCTGGAGTCGCCACAAGAGCCTATCTTTGCCACGGGAGATAAACCTCCCCGACCTTGATGACCAAACGGAGCAGCCATCCGAGGGCAGCCTGGTGAACGAAACTGAGTGCACAGAGCTTTCCAGTCAGAACAGCCCATTACACacagatgaccaatcagagctgcCCTACGCTGACACCTCACCCCAAGATGAGCCTCTGTCGCAGCTCCCATGTGACTGTCCAGAGGTGGAAGAGTCAGAATCTGTTGGTGAACACTGCCCAGAATCTACTGTGGTGGTGGGTGATGGAAACCCCTCGCCGTCAGATGGTCAGCCCGAATGACAGCTGCTGAACGATGGTAACACTCACTCCATTCACACCATAAGCTGGATTGTAGAGTCCGGTTGAGGAGAACCTGGAGGAAGTCTTTTAGCAGTGAAGCACACTTTCTGCTCCGTACTAATCAAAGCAACCCCAATCGCTGGTCCTGCCTTCACACAAGACACgccgtgtgtgtttgtatgcgtgGGATTTCATAGATACACACTGCTATTTGAGCTTCGGATACGATTTCAGAATGATCGTACAATTGTATGCGTGCTTTCATCATTTATTTGAGAGGTTTCATTGAGCGTTGATGGCTCAAGAGCGATCATTATTCAGCATTTCAGTTTTCATCATACACAActctgttgtttttttgtttacttgtggCTTCAGGATGCGTAAATCTTTGTTGACATTCATTGaaattaattactttaataaCGTCATGgcgtgga

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006821 chloride transport biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005247 voltage-gated chloride channel activity molecular_function
GO:0005254 chloride channel activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070705-19 Enables chloride channel activity. Predicted to be involved in chloride transport. Predicted to act upstream of or within transmembrane transport. Located in cell junction. Is expressed in several structures, including eye; gill; heart; liver; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in idiopathic generalized epilepsy 11 and primary hyperaldosteronism. Orthologous to human CLCN2 (chloride voltage-gated channel 2).

Ensembl:

ensembl_id ENSDART00000090260

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00032068 lncRNA downstream 330809 16548872 ~ 16554476 (-) True XLOC_016266
TCONS_00032065 lncRNA downstream 365905 16517034 ~ 16519380 (-) True XLOC_016265
TCONS_00032064 lncRNA downstream 365994 16512861 ~ 16519291 (-) False XLOC_016265
TCONS_00032059 lncRNA downstream 378490 16502780 ~ 16506795 (-) False XLOC_016263
TCONS_00032060 lncRNA downstream 378828 16502780 ~ 16506457 (-) False XLOC_016263
TCONS_00032076 lncRNA upstream 68370 17113329 ~ 17114836 (-) True XLOC_016270
TCONS_00032093 lncRNA upstream 747209 17792168 ~ 17947144 (-) True XLOC_016274
TCONS_00032096 lncRNA upstream 1782322 18827281 ~ 18830794 (-) True XLOC_016275
TCONS_00033797 lncRNA upstream 2055463 19100422 ~ 19105442 (-) False XLOC_016276
TCONS_00033798 lncRNA upstream 2107413 19152372 ~ 19181553 (-) False XLOC_016278
TCONS_00032066 mRNA downstream 319595 16547706 ~ 16565690 (-) False XLOC_016266
TCONS_00032067 mRNA downstream 322780 16548356 ~ 16562505 (-) False XLOC_016266
TCONS_00032057 mRNA downstream 435781 16384285 ~ 16449504 (-) False XLOC_016262
TCONS_00032056 mRNA downstream 505002 16365768 ~ 16380283 (-) False XLOC_016261
TCONS_00032053 mRNA downstream 526243 16198735 ~ 16359042 (-) False XLOC_016260
TCONS_00032074 mRNA upstream 51202 17096161 ~ 17115256 (-) False XLOC_016270
TCONS_00032075 mRNA upstream 51891 17096850 ~ 17114852 (-) False XLOC_016270
TCONS_00032077 mRNA upstream 155361 17200320 ~ 17235891 (-) True XLOC_016271
TCONS_00032078 mRNA upstream 221800 17266759 ~ 17392895 (-) False XLOC_016272
TCONS_00032079 mRNA upstream 222701 17267660 ~ 17393216 (-) False XLOC_016272
TCONS_00032069 other downstream 269230 16615940 ~ 16616055 (-) True XLOC_016267
TCONS_00032063 other downstream 372863 16508824 ~ 16512422 (-) True XLOC_016264
TCONS_00032040 other downstream 1777569 15102103 ~ 15107716 (-) True XLOC_016253
TCONS_00032037 other downstream 1852164 15028646 ~ 15033121 (-) True XLOC_016251
TCONS_00032033 other downstream 1890795 14994393 ~ 14994490 (-) True XLOC_016250
TCONS_00032082 other upstream 294459 17339418 ~ 17392808 (-) False XLOC_016272
TCONS_00032083 other upstream 308872 17353831 ~ 17392719 (-) True XLOC_016272
TCONS_00032102 other upstream 2172779 19217738 ~ 19222433 (-) False XLOC_016279
TCONS_00032107 other upstream 2317839 19362798 ~ 19363161 (-) True XLOC_016282
TCONS_00032108 other upstream 2461352 19506311 ~ 19513296 (-) False XLOC_016284

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000004_04498877_04532504.mRNA True 3468 mRNA 0.52 25 CI01000004 4498877 ~ 4533086 (+)