RNA id: XR_005052168.1


Basic Information

Item Value
RNA id XR_005052168.1
length 5074
RNA type mRNA
GC content 0.58
exon number 31
gene id LOC110526181
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 56362031 ~ 56445865 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gctagAGTCACATAGGTGTCACAATGGTACAGTCTGCCCCCATCCGCGGAACTCCAGTCCCTGCAGATGATCTGGTGGAAATGTTATGAAGACAGGTTTTAAGCCAATAATCATACGCGAGCAAGCATTTCACAGTCTACAATTAGGTGTGGATTTAAAGCACACATTGACGAGCTGTTGAATCACCATCTCTGGAAAATGGATCCAGGATACTTATTACATCTCGCTATTTGAAATACGTCTCAATTCATCTCACTCACTGGCTTTCATTCTACCATCAATAACATACCAGGCCGACGAcgactgctaactagctagcaggtattcctagccacctagctaacatacTGGTTTCTCCATTCTTTTCTCAGATGTCCACAATGACCACTAAGGTCCTGCATGCTCCTCCCACACCTAGCCCTGCCTCTTCGTGATTGAACAGCTGCTGACTGACCAGAGAGGTGATATAGGTCTGTGTGGCCATGACTTAAAGACGTCATCAATCAAAGATGGAGAAAAAGAAAATGTGCCCCCGTCTGCTGGACTACCTGGTGGTGGTCGGAGCCAGGCAGCCCAGCACTGATACCGGGTCCCAGACCCCCCAGCTCCTTCGTCGCTACCCGCTGGAGGACCACCCGGACTTCCCCCTGTCCCCGGATGTGGTTTTCTTCTGTCAGCCTGAAGGATGCCAGAGCATCCGGCAGCGCCGGGTCAGCCTGCGTGACGACGCCTCCTTCGTCTTCGCACTCACTGATAAAGACTCGGGCATCACGCGCTACGGCATCTGCGTCAACTTCTACCGCTCCTTCCAGCGTGGGGGGCACCGCCGTGACAAGGCAGGTAGTGGTGGAACGGCGGCACAGACAGCGGAAGCGACCAGCGAGGGTTCCGATGGCAGCGGTGGCTGCCCCACTGCCTCCACGTTGCCGACACCTGCCAGTGCCGACACAACAGCCACGTCCACGCCAGGCACGGAGCCGGGACCGCCCGGTGGTGAGCCAAATGCCGGCAGGTCCCCTCGGCACAAACGCAGCACTGCCAAAATGGTCAATCGGAACCGCGACAGCACGCTGACCTCGCTGTGCATGATCAGCCACTACCCCTTCTTCTCCACCTTTAGGGAGTGCCTGTACATCCTCAAGAGAATGGTGGACTGCTGCAGCCACAGGTTGACCCAGCGCGCCGGCCTGCCACGCGGAACTCAGAGGGACACCATGTGGCGCGTGTTCACAGGGGCCCTGTTGGTTGAGGAGAAGGGCAGCCAGCTGCTGGCTGACCTGCGGGAGATCGAGTCCTGGGTCTACCGCCTCCTGCGCTCTCCGGTGCCCGTGGCGGGCCAACGGCGCGTAGATGTGGAGGTGCTGCCCCACGAGATGCAGCCGTCACTCACCTTTGCCCTGCCCGACAATTCTCGCTTCTCCATGGTGGACTTTCCCCTGCACCTGCCCCTGGAGTTGCTGGGTGTGGATGCCTGCCTCATGGTGCTCAGCTGCATCCTGCTGGAGCACAAGGTGGTCCTCCAGTCGCGGGACTACAATGCCCTGACCATGAGTGTCATGGCGTTTGTAGCCATGATCTACCCCCTGGAGTACATGTTCCCTGTCATTCCCCTACTGCCCACCTGCATGGCCTCCGCTGAACAGCTTCTCCTTGCCCCCACCCCTTACATCATAGGTGTGCCTGCCAGCTTCTTCCTCTACAAATCCGATTTCAAAATGCCCGACGACATTTGGCTTGTGGACCTGGACTGTAACAAGGTCAAAGCACCCACCAATGCAGAGCACCTACCCCCTCTTCCCGAGCCGGAATCCACAGAACTCAAGAAACACCTGAAACAGTGTCTGGTTAGGTTGACCGTGATCACCCAAAAGCAGATCTTCTCCTCTGACAATAAGGCCCTGGCCAGCATGAGTCTCAACACCCAACCCATTCTGAACCTGGAGAAGTTCCAGGAGGGCCAGGAGTTACCCCTGCTCCCCCCCGGCCAGAACAAGGCGTCGCCCTCCTCCACCGAGTTCAACCCCCTCATCTACGGCAACGACGTGGACTCTGTGGATGTGGCCACCAGGGTTGCCATGGTGCGGTTCTTCAACTCCCCCAACGTGCTCCAGGGTTTCCAGATGCACACACGCACGTTGCGCCTTTTTCCCCGGCCTGTGGTGGCTTTCCAGGCCACGTCCTTCCTGGCCTCGCGGCCCCGCCGCTCAGGCTTCGCTGAGAAGCTGTCACACACCCAGGCCGTGGAGTACTACGGCGAGTGGGCTCTCAACCCCACCAACCTGGCCTTTCAGAGGATCCACAACAACGTGTATGACCCATCTTTGATCGGAGACAAGGGCAAGTGGTACGCCCACCAGCTGCAGCCGGTGTTCTACCGCGTGTACGACAGCAGCTCCCAGCTGGCAGAGGCCATGAGCGGACCCCTAGAGGATGAGGCTAATGACTCGGACCCCACAGAcgacagCAGCGACAGCGAGGCTGGCTACGACGACTCCAGCTCTTCCTACTCGTCACTTGGAGACTTGGTGAACGaaatgatcaaatgtgacatCCAAGGGGACACGCCAAACCTGGATCCCCCTACCCACGCTGCCCTGGGAGATGCCAGTGAAGTGGAGTTCCAGGACTTCCAGGAGTTCAAGGGAGAGGGTCCCCTCCCTCAAGAGAAGGCACTGCCCGAGGGGGGCGATGGACCTCCTGAACCTCCTGATGGACAAGCCCTCCGCTCGAGCTCCAGCACAACcgccagctccagccccagcacAATCATCCAGGGAGTCAACAATGAGCAGGCAGAACCAGTGGAAATGGAGGCGTTGGCCAGTGCAGCTCTACAGAACCCTGTCCCGGGATTGGGCgttcctcccttctccagacctcCTCCAGACGCTGCCCCTGTGGGACCAGCCAATAAGAAGGGAGAGTACGACAACCCCTACTTTGAGCCTCAGTATGGCTTCCCTGCTGAGGAGGACCCTGAGGCAGAAGACCAAGAGGAGACGTACACGCCCCGGTTCAACCAGAACCTCAACGGCAACAAAGCCCAACGCCTCCTGAGGCCCAGCAGCCTAAAGCTGCCCGGAGAGTCGGACGGAGAGGGCGACTCCCGCAACAGTTCTCCAAATTCCACCATCTCCAACAACAGCAGCGATGGCTTTGGGGGCCTCATGTCCTTTGCTAGTAATCTGTACAAGAACCACGGCACCAGCTTCAGCCTCTCCAACTTGTCTGTACCCAATAAGGGGGGGCTGAGGGAGAAGGCCGCTGGGGCTGGGCCCTTCCCCAATCTCAAAGTATTTGGACTAAATTCTCTAATGGAGATAATTACAGAGGCCGGCCCGGGGAGCGGAGAAGGAGGCGCCCGCGGTCCCCCCAGGGCCCTCGTTGACCAGAAGTCGTCGGTCATTAAGCACAGTCCCACGGTCAAGAGAGAGTCCCCCTCTCCCCAGGGTCGTGCCAACAATACCAGTGAGAACCAGCAGTTCCTGAAGGAGGTGGTGCAGAGCGTGTTGGAGGGCCAAGGCGTGGGCTGGCTCAACATGAAGAAGGTGCGCCGCCTGCTGGAGAACGAGCAGCTACGCGTCTTCGTGCTGAGCAAGCTGAACCGGGCCGTCCAGTCAGAGGAGGATGTCAGGCAGGAGGTCATCCGTGATGTGGAGATTAGCAGGAAGGTGTACAAGGGCATGTTAGACATACTGAAGTGCACCGTTTCTAGTCTGGAACACTCGTACACCAATGCCGGGCTTGGAGGCATGGCCAGCGTCTTCGTTCTACTGGAAATAGCACGCACCCACTACCAAACCAAAGTAGACCCAGAGAAGCGCAAGCGGAGCCCCAGTGACTCTGCAAGCAGCCCGGGCAGCAAGGGGAGCCCGTCTCCCCGCATGGAGGGCACCAAGCCCCCGGGGCTCCTTCCGGTTCCCCGTCTCCAACTGCCGCACCCCACCTCCGGGGGCAAAGGCACCCGCCACTTTGACACCCGGAGTCTGAACGAGGAGAATTTTATTGCCTCCATTGAATTGTGGAGCAGGCACCATGAAAAGGATAAGCAAAAAGCTATGGAAAAACAACAGAGAGCGGAGGGGGCTAAGAAACAGCACCCTGAGCTGACCGACATGGAGGAGAAGAAGTCCCAGATCAGTGCTGACAGTGGCCTCAGCATCACCTCCGGATCCCAGAAGAGTGACACAGAGTCTGTGACCAGCACTGAACCGCCAGTCCTTACCCGAAGCACCAGCCAGGACTCAGAGGCCAGCACAGTGATAAGTAACAGCTCAGGGGAGACGCTGGGAGCTGACAGTGACTTGAGTAGCACCGCTGGAGAGGGCTTGGGTGGCAGGCAAGCCCCCCACCTCAACCTTTCCAGGGGAACACTGTCCGACAGCGAGATTGAGACCAACCCGGCCACCAGCTCAGTGTTTGGTAAGACCCAAAAGATGAAGCCTGGTGTGAAGGAGGCGAACTCTAAACTTGTGCCTGTCCTGGCTAAGGGGCCTCCCGCCCAGCCCTTGGAGGACATAAGCATGAGGATTTACCTGTGTGATGGCCTGCTGGCTCTGAGCTTAACCCTCTTTGCTctgctgctcctcttcctccctgctgCGTGTCCCGGGAACACCTTGCAGGGCGCGACAAGAGCTCCATGTGGGACCAGCTGGAGGATGCTGCCATGGAAACCTTCTCTCTGAGTAAGGAGCGCTCTACACTGTGGGACCAGGTCCAGTTCTGGGAGGATGCTTACTTGGATGCTGTCATGTTGGAAAGGGAGGGGATGGGTATGGACCAGGGACCTCAAGAGATGATTGACAGATACTTGTCACTCGGGGACCACGACCGTAAGCGCCTGGAGGACGACGAGGACAGGTTGCTAGCTACTCTACTGCACAATATGATCGCCTACATGCTAATGGTTAAGGTGAGCAAGAATGACATCAGGAAGAAGGTGAGGCGTCTGATGGGGAAGTCCCACATCGGCCTCAGCCACAGCCAGGAGATCAATGAGTGTCTGGACAAACTGGCTAATTTGAATGGCCGCGAGCTGTCCATCAGACCTAGCGGAAGCCGTCACATCAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU594173 lncRNA upstream 36880 56324937 ~ 56325170 (+) True G524199
TU594074 lncRNA upstream 80077 56278248 ~ 56281973 (+) True G524139
TU594032 lncRNA upstream 132398 56208278 ~ 56229652 (+) True LOC110526177
TU594000 lncRNA upstream 219844 56140696 ~ 56142206 (+) True G524074
TU593999 lncRNA upstream 221572 56139929 ~ 56140478 (+) True G524073
TU594293 lncRNA downstream 156345 56584276 ~ 56589481 (+) True G524303
TU594362 lncRNA downstream 249178 56677109 ~ 56756337 (+) True G524371
TU594512 lncRNA downstream 460618 56888549 ~ 56889643 (+) True G524519
TU594514 lncRNA downstream 464455 56892386 ~ 56892635 (+) True G524521
TU594462 lncRNA downstream 465314 56893245 ~ 56895396 (+) True G524469
XM_021604941.2 mRNA upstream 4420 56333476 ~ 56357630 (+) False nr1h3
XM_021604942.2 mRNA upstream 4420 56333476 ~ 56357630 (+) True nr1h3
XM_021604944.2 mRNA upstream 4558 56332732 ~ 56357492 (+) False nr1h3
XM_021606897.2 mRNA downstream 125919 56553850 ~ 56562955 (+) False LOC110526184
XM_036980495.1 mRNA downstream 125931 56553862 ~ 56562955 (+) True LOC110526184
XM_021606939.2 mRNA downstream 518423 56946354 ~ 56951411 (+) False ptpmt1
XM_021606938.2 mRNA downstream 519625 56947556 ~ 56951411 (+) True ptpmt1
XM_021606942.2 mRNA downstream 526203 56954134 ~ 56960155 (+) True ndufs3
TU593913 other upstream 241316 56110279 ~ 56120734 (+) True LOC110526175
TU593827 other upstream 446104 55914343 ~ 55915946 (+) True LOC110526169
TU593613 other upstream 795551 55563748 ~ 55566499 (+) False LOC110526167
TU593407 other upstream 877443 55484249 ~ 55484607 (+) True G523529
TU592297 other upstream 1421177 54920472 ~ 54940873 (+) True LOC110526161
TU595721 other downstream 1148153 57576084 ~ 57581070 (+) True G525645
TU595951 other downstream 1176177 57604108 ~ 57606367 (+) True G525861
TU595733 other downstream 1193917 57621848 ~ 57627619 (+) True fbxo3
TU595717 other downstream 1211543 57639474 ~ 57642482 (+) True LOC110526214
TU596007 other downstream 1275527 57703458 ~ 57710340 (+) True G525912

Expression Profile