RNA id: XM_021606938.2


Basic Information

Item Value
RNA id XM_021606938.2
length 1558
RNA type mRNA
GC content 0.42
exon number 4
gene id ptpmt1
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 56946354 ~ 56951411 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaggcaatTTATAGTACAATATTTACACGTGTATTGGGGACAACGGTacaataagagtctggtagcagcagttgtgatatGTGCTAACGTGCGGGGAATCagggcaggtggtcagtccagttcacgtgttcagcagtctgatggcttgtagatagataTAAACTCTCGAAACGATCCTATGGCAAATATATTAACGTATCTGGTTATTTTTCTTCAACCTAACAATTTACTCTGTGTAATAAGTCCTCCGGGCCACAAGGCGAAGTAGCCTGTTAGGTTGAATAGTACCTTTAGAACAACAAGTTTTCGTCCCATTCATTTAGATCTTGTTGGTTTGTGGTGGGCCATGCATGTATGTCGGATTTGGAATTTGCCTTAACATTAGAGGTGCTGACTACGCTGTGGTGTGATCATGTCTGGGGCGTTAGCAAGGGTACTGTTTTATCCCACATTAGCGTATAATGTTGTCATGGAAAAAGTATCCTCAAGACGGTGGTTCAATCGCGTGGATCAGACTGTCATTCTAGGAGCCCTGCCTTTCAAATCAATGACTAAtgagCTGGTGCAGACAGAAAATGTCAGGGGGGTAATAACCATGAACGAGGAATATGAAACAAAGTACTTCTGCAACTCAGCTGAGGAGTGGAAAGCCGAGGGGGTGGAGCAGCTGCGACTCAGCACAGTGGACCTGACCGGTGTGCCCAGTCTAGAGAACCTGCACAGAGGAGTGGAGTTTGCACTTAGTCACCGGGAAAAGGGCTCCAGTGTGTATGTCCACTGTAAGGCTGGACGCTGTCGCAGTGCTACACTAGCTGCTGCATACATCATAAGGATACACTGCTGGAGTCCAGAGGAAGCATGTCAGATGTTGGCCTCTGTCCGACCACATGTAATAATTCGTTCATCACAGCTGGAGATGCTTCGGCGGTACCATCAGCAAGTCTGTGGCGGAGGTTCCATTTAAGAGTGAGGCTGCCAGCATACTTATTGCACTTATACAGAAACTGTAAATTTAGCATTGTCAAGACGAACAATATGCTGCTTGAAGGGATTTTTGACCTTTAGCTCATTCTTTTACATAGTTTTGTTACTCAACTGGATCAAGTGTATATTGAATAATTCTCAAATGTTGTATAATTCAAGTGTCATCACAGCTCATCAGAACATGGGGTATAATAAATTGCTATCCCAATCAAAGTACTGACAGGTGGGTGAAGGGGGTGTATTTAAAAGCATGTTTctacagattttttttcttccttaATTAGGACATTTGATTACAATTTCTATGTTAAGAAAATTTGTGATATTTTCATTGGTACTAATTTCACTGATCGTTTGATAGTATTCTATATGGGTTGTAAAAACATATTGgaaaataattatattattataaaaGGATAGCTATTGAAACTTAATCCATTGAAACATAACCGGAGTGAACACGGGGCCTAATTGTCTGGAAAGCCCAGGTTGAAATGAGCATTTGAATCAGGAAAGGTTACTCTCACGACCTCTACAAACCATGTTGAATAAAGTGATATGTTAACGTACTTTA

Function

GO:

id name namespace
GO:0035335 peptidyl-tyrosine dephosphorylation biological_process
GO:0008138 protein tyrosine/serine/threonine phosphatase activity molecular_function
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG:

id description
K14165 K14165; atypical dual specificity phosphatase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU594465 lncRNA upstream 41162 56906153 ~ 56906394 (+) True G524472
TU594463 lncRNA upstream 47302 56899979 ~ 56900254 (+) True G524470
TU594466 lncRNA upstream 48136 56899176 ~ 56899420 (+) True G524473
TU594462 lncRNA upstream 52160 56893245 ~ 56895396 (+) True G524469
TU594514 lncRNA upstream 54921 56892386 ~ 56892635 (+) True G524521
TU594550 lncRNA downstream 9352 56960763 ~ 56972189 (+) True G524555
TU594574 lncRNA downstream 39132 56990543 ~ 56993453 (+) True G524577
TU595666 lncRNA downstream 158109 57109520 ~ 57109750 (+) True G525590
TU595671 lncRNA downstream 162563 57113974 ~ 57114230 (+) True G525595
TU595674 lncRNA downstream 173172 57124583 ~ 57124805 (+) True G525598
XM_021606897.2 mRNA upstream 384601 56553850 ~ 56562955 (+) False LOC110526184
XM_036980495.1 mRNA upstream 384601 56553862 ~ 56562955 (+) True LOC110526184
XM_036980489.1 mRNA upstream 501691 56362055 ~ 56445865 (+) False LOC110526181
XM_021606942.2 mRNA downstream 2723 56954134 ~ 56960155 (+) True ndufs3
XM_036980546.1 mRNA downstream 137336 57088747 ~ 57196089 (+) False LOC110526195
XM_036980547.1 mRNA downstream 143401 57094812 ~ 57181107 (+) False LOC110526195
XM_021606948.2 mRNA downstream 143406 57094817 ~ 57196089 (+) False LOC110526195
XM_021606946.2 mRNA downstream 143482 57094893 ~ 57196089 (+) True LOC110526195
TU593913 other upstream 826822 56110279 ~ 56120734 (+) True LOC110526175
TU593827 other upstream 1031610 55914343 ~ 55915946 (+) True LOC110526169
TU593613 other upstream 1381057 55563748 ~ 55566499 (+) False LOC110526167
TU593407 other upstream 1462949 55484249 ~ 55484607 (+) True G523529
TU592297 other upstream 2006683 54920472 ~ 54940873 (+) True LOC110526161
TU595721 other downstream 624673 57576084 ~ 57581070 (+) True G525645
TU595951 other downstream 652697 57604108 ~ 57606367 (+) True G525861
TU595733 other downstream 670437 57621848 ~ 57627619 (+) True fbxo3
TU595717 other downstream 688063 57639474 ~ 57642482 (+) True LOC110526214
TU596007 other downstream 752047 57703458 ~ 57710340 (+) True G525912

Expression Profile