RNA id: TU594550


Basic Information

Item Value
RNA id TU594550
length 3318
lncRNA type antisense_over
GC content 0.43
exon number 2
gene id G524555
representative True

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 56960763 ~ 56972189 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAACATGAACTTTTATTTATTCTGCTTCACATGTTCCAAAGCATCCATTGTATAAGAAATATTTTGAACATCTCAAGGAGCCAACAAGAAGCTGACTGTACTAACACATGGGTTGAATGTACCCAGGGCAAAATGTTATTTAGTTTACAATCATTCCTTTGTAAGGACAAAGATATAAGCACAAGTCACCAACATACCACTTACAACAAAGTTATTTACCAAAAATCACATTTGGATAGAAATACGGTATCATTACAAATATCTGCAAAGCTGTTAAACGATTATTCTCCATGACAGCATGCATGAAATTATAAGTCAAAATATTCTGTAAGACTCAATTCCAAAAAATCATAATGCTTGTTATCTCTCTGGAAATTGATCTCACTGAACTCTAAGAAATAATACTTTTGGTGGGTTCCTTACTCCCTCACAAGTTATCATGCTAGTGGTTTTTAAATATAATTAAAGCTGTTATACAAATTTGGTCCACTCAACTCAAGAGGACTATTTCCTATTGCAGCCCATGCACAGAATGATTGAAATTGAACTACAAAGCAAATGCTAAACTATCATTTTCGCATACAAATTGAAAAATTATACTCAGTTTCAAATATTTTTCAAATCGCTGTATCGAAAAAGTCATTTCACCCTCAAAGTACAAAAGTTGCCACAATTAGGGAGTCAAGAGTGTGACGAAGGATGCTCTCCAAAAGTAGGTTGTGTAAGGGCAGCACCACAGGAGTGAGTATGTGCCTGACTCAACGCCGTCACGGGCAGGTTAGTGGTTTTTcttcatgaatcttgttctggaggcagctatGCAGAATGGTCACTAGTCCTAAAATCTGATTATAAACATAACCTTAACTACACAGCTAACCATAAtgcctagccctaaccttaaattaagaccaaaaatacagttttgactttgcagctggcccatctagggCAAatggctcagttctgcctccagggcaagattcatgacaataaacatcaacctgctATTCGCATAGTAGATGACTATTAACTGGGAGACTAACTATTACTGAaatactgtctcattattcaTTGTGTCACATTTTGTGTTTATGCCTTTTGATAAGACGCTGATTCAAAAGGAACACTACCCAGAGATGATGGTGTAGAGAACCCAATAGGCTCACAATACTGATGTGGAGAATCAAAATGCAGTATTTTCAAGAGTGTAAAACTAACATTAAAATTGAACTATATGCTATTTTTATATGTTGTTTAAATTACCCCTCAAACTGAGACTGTAATTTGCTGAAGTCTGGCACAATTTGAACAGCATTTTTCTCTCTTGGGGTGTGTGAATTAAACCGGCACGATTATCATAAGGGATGATATAGGATATTACATTttctccacagcattaaccatcTGAGGAAATGAATTCAACTCTACTAAGTTAGAAATGAAATTATGAGTCTGGTGCCTCAAGGTCCAAAACTAGCATGTGCTCTGTGAATATGGTGTCTGTCTTCGTCCAATGGATAGCCGTGCAGGGTAAAGGGACATTTTATTCTAAATGTTGGTCATGCTTTTTGGTTCAAAATGTCATTTTATTTCATTGTGATCAGACACGGGCCTTAGCAGAAACTCACTCTaaaatgaaggaaaaatactCATTTTGACACAAAACAAGTGTCCCCGTTATTTGACCATGCCTTTCAAGACATTTTATAAAGGTATGTTAAAAATCCAGATAAGTAAGTATTAACTGAGACATCATATCCTGAAAATATCAGAAATGCTAGCAAGTTGTAATATCTTCATTGAATTCAAGACTCCAAGTTGGAGTTTGACAAAGTAAACCCATTGAAAGAATTAGCTGGACATAGAATAATTGAGTGTAGTAGGTCCACAGCCAACTGTGTTCTTGACACTGTCCCTTATGGCTTCCGGCTCTGCTGTTGCTGCTGATTGGTGGGTGGTTTTTGGAGGTCTGGATAGACCAGGAATCCAGTGAAGGTAATATACTTGGCATGGTTGCTGTATGCTCCAAAGCCATCGCGCTGGTGGCTATAAAGCCAGACGATATCACCACGGTGCAGAGATAGCATCAGACTCTGGCTCTGCAGAGCCTTTTCAGTGTCACTGTCATCGTAGATCATGGCCTGCACCTCCAGGTGGTTCTTCATCAGCTTGACTGACAGTGTTTTGTGGGGAAGCTTGCCAGCATTGAAGGAGAAGAAGTAAGCTCCTGGAATACGGCAGGTGAATACACCTTCGGTGACGTTAAAGTCAGCGCCAATGTTGACAAAGTCTGTGTCAAAGGCGATAGGACGGTGCTCTGGGAAGCCCTGGTCCACCCCTACGATGCTCTGAGTGCGGCCAACAGAGAAGGCCGACCTCTGGTCCCCCTCttcatcctctacctcctctctcttctctatgtTGTCCCTTTCTCCTAGCCCATCTTGGTCAGTTAGGGTGTGGTCATTGGCAGCCGCCTCGTTTCCATACATACGAGTTGGGTCTTCATGCTTGGGGTCTTGGAAGGTGTAGGTGTCAGGGTAGATTAGGTAGCCGTTGAAGGTGGTGTAGTGACCTGTGTTGCTGTAGATGGCATAGCGGGGATCACCATGAAGGCGGAGCCAGACTGTGTCACCAAAGTCCAGCTGCAGCATGGCGCTTTGGCTCTGCACCTTACGCTCTTCTCCCGCATTCTCATCATACACAATGGCCTGCACTTCATTCCTGTTCTTCATTAGCATGACTGACAGGTCCCGACGTGGGAATTTCCCCACTGTGAAAGAGAAGTAGTATGCTCCGGGGATGCGGCAGCGGAACATGCCTGCCTTTGGATCAAAGTCCCCACCGATGTTAACATACTCCTTGTCAAAGGTCACCACCATCTTTGGTCCACCCTCCATGCTGCTGGTCCGTGCCACTGAGAAGGCAGACCGCTGTTCTGCATCCTCAGGCAGGCGAGCAAAGGCCCACATGCAGGTTACCTGACACATCAGGCCAATCAGGAGACTGCTAGCTGGTATCTTCATCTTCCTGTGTAGGAGGAGACCGTGCTGTAGGAGAGGAATGCTCAAAGTTCTTCAAAAGGGCTCTGCACCAGGAAGCGTTCACTGTCTTTGTGTGTATCAACCTGCTGCTGCTGTCTGTGAGGCTGTGtaagcagcacacacacatacacacacacagtggaggatATAAGAGTGATAAAGGGGCTCCTCATCTGATCAGGGAGACTCTGGAAGTGCAGAGCGCTCCTCTACTAAGGCATTTTCTGCAGCGGGGTGACACAAGGGGGTATTGGAAAAGGTGAGGGGATTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU594465 lncRNA upstream 54369 56906153 ~ 56906394 (+) True G524472
TU594463 lncRNA upstream 60509 56899979 ~ 56900254 (+) True G524470
TU594466 lncRNA upstream 61343 56899176 ~ 56899420 (+) True G524473
TU594462 lncRNA upstream 65367 56893245 ~ 56895396 (+) True G524469
TU594514 lncRNA upstream 68128 56892386 ~ 56892635 (+) True G524521
TU594574 lncRNA downstream 18354 56990543 ~ 56993453 (+) True G524577
TU595666 lncRNA downstream 137331 57109520 ~ 57109750 (+) True G525590
TU595671 lncRNA downstream 141785 57113974 ~ 57114230 (+) True G525595
TU595674 lncRNA downstream 152394 57124583 ~ 57124805 (+) True G525598
TU595676 lncRNA downstream 154216 57126405 ~ 57126693 (+) True G525600
XM_021606942.2 mRNA upstream 608 56954134 ~ 56960155 (+) True ndufs3
XM_021606939.2 mRNA upstream 9352 56946354 ~ 56951411 (+) False ptpmt1
XM_021606938.2 mRNA upstream 9352 56947556 ~ 56951411 (+) True ptpmt1
XM_021606897.2 mRNA upstream 397808 56553850 ~ 56562955 (+) False LOC110526184
XM_036980495.1 mRNA upstream 397808 56553862 ~ 56562955 (+) True LOC110526184
XM_036980546.1 mRNA downstream 116558 57088747 ~ 57196089 (+) False LOC110526195
XM_036980547.1 mRNA downstream 122623 57094812 ~ 57181107 (+) False LOC110526195
XM_021606948.2 mRNA downstream 122628 57094817 ~ 57196089 (+) False LOC110526195
XM_021606946.2 mRNA downstream 122704 57094893 ~ 57196089 (+) True LOC110526195
XM_021606949.2 mRNA downstream 289879 57262068 ~ 57277274 (+) True LOC110526197
TU593913 other upstream 840029 56110279 ~ 56120734 (+) True LOC110526175
TU593827 other upstream 1044817 55914343 ~ 55915946 (+) True LOC110526169
TU593613 other upstream 1394264 55563748 ~ 55566499 (+) False LOC110526167
TU593407 other upstream 1476156 55484249 ~ 55484607 (+) True G523529
TU592297 other upstream 2019890 54920472 ~ 54940873 (+) True LOC110526161
TU595721 other downstream 603895 57576084 ~ 57581070 (+) True G525645
TU595951 other downstream 631919 57604108 ~ 57606367 (+) True G525861
TU595733 other downstream 649659 57621848 ~ 57627619 (+) True fbxo3
TU595717 other downstream 667285 57639474 ~ 57642482 (+) True LOC110526214
TU596007 other downstream 731269 57703458 ~ 57710340 (+) True G525912

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
eurasian perch (Perca fluviatilis) TU44033 True 4721 lncRNA 0.44 1 NC_053114.1 40920334 ~ 40925054 (-)
bowfin (Amia calva) AMCG00007162 True 1164 mRNA 0.62 1 CM030123.1 5692142 ~ 5693305 (-)