RNA id: AMCG00007162


Basic Information

Item Value
RNA id AMCG00007162
length 1164
RNA type mRNA
GC content 0.62
exon number 1
gene id AMCG00007162
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 5692142 ~ 5693305 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCCCCAGCTGGGCCGCTCCTGATCGGGTTGCTGCTGCAGGCGACGGGTGCGGTGTTGTCGGCCTACATGGCGGAGGGGGTCCTGGAGCAGCGGTCCGCCTTCTCGGTGGCGCGGACCAGCAGCATGGAGGGGGGACCCAAGATGGTGGTGACTTTCGACAAGGTCTACGTCAACATCGGCGCGGACTTCGACCCCAAGACGGGCGTCTTCCGCTGCCGGATCCCGGGCGCCTACTACTTCTCCTTCACGGTGGGCAAGTTCCCCCGGAAGAACCTGTCAGTGATGCTGATGAAGAACAAGAATGAGGTGCAGGTCATCGTGTACGATGAACACCACAGCAAGGAGAGGAAGGTGCAGAGCCAGAGCGCCATGCTGCAGCTGGAGTTCGGCGACACCGTGTGGCTGCGGCTACACGGCGATCCAAAGTACGCGCTCTACAGCAACACCGGGCCCTACACCACCTTCAACGGCTACCTGATCTACCCCGACGTCTACGCCTTCCAGAGGAACGCCCTGCCTTTCCAGGAGCAGAGACACGGACACCTGGAGaccgtctcctcctcctcctctgccggGAAGGGCTGCGAGCGGGCGCGGGAGCCGGAGCACATGCAGTCTGATCAACCGGCGCCgccagaggaagaggaagaggtgagagagCGGGAagaagagaaggaggaagaggaggaggatccCAGGTCGGCGTTCTCCGTGGCCCGGAGCCAGAGCATCCTGGGGGAAGACCAGGGCATGGTCCAGCACCGGCCGATGACCTTCGACACGGATTTCGTGAACATCGGCAACGACTTCAACACTTCGGCCGGGGTGTTCACCTGCCGGGTGCCAGGCACCTACTACTTCTCATTCACCATCGGCAAGCTGCCCCACAAGACCATGTCGGTGAAGCTGATGAAGAACCACCTGGAGGTGCAGGCGATGATCTACGACGACAGCCACTCCAAGCGGCGGGAGATGCAGAGCCAGAGTCTGATGCTGTCGCTGCACAAGGGCGACACAGTCTGGCTCTACAGCCACCAGCACGAAGGCTACGGCGCCTACAGCAACCACGGCAAGTACATCACCTTCACGGGGTTCCTGGTGTACCCCGAGCCGGCGCCGCACAGACTGCAGAGCCCCACGAGGCAGAGGAACGAAATATGA

Function

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0035235 ionotropic glutamate receptor signaling pathway biological_process
GO:0007215 glutamate receptor signaling pathway biological_process
GO:0030001 metal ion transport biological_process
GO:0006813 potassium ion transport biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU26960 lncRNA downstream 129934 5559594 ~ 5562208 (-) True G21550
TU26942 lncRNA downstream 168465 5521615 ~ 5523677 (-) True G21536
TU26943 lncRNA downstream 173391 5517227 ~ 5518751 (-) True G21537
TU26941 lncRNA downstream 176171 5514986 ~ 5515971 (-) True G21535
TU26919 lncRNA downstream 196407 5495349 ~ 5495735 (-) True G21522
TU27012 lncRNA upstream 27958 5721263 ~ 5721542 (-) True G21582
TU27114 lncRNA upstream 221767 5915072 ~ 5988322 (-) True G21646
TU27225 lncRNA upstream 647474 6340779 ~ 6341171 (-) True G21722
TU27243 lncRNA upstream 825818 6519123 ~ 6519736 (-) True G21739
TU27263 lncRNA upstream 872912 6566217 ~ 6569739 (-) False G21756
AMCG00007157 mRNA downstream 14573 5674177 ~ 5677569 (-) True AMCG00007157
AMCG00007158 mRNA downstream 63770 5613748 ~ 5628372 (-) True AMCG00007158
AMCG00007156 mRNA downstream 86274 5592874 ~ 5605868 (-) True AMCG00007156
AMCG00007150 mRNA downstream 103913 5580784 ~ 5588229 (-) True AMCG00007150
AMCG00007152 mRNA downstream 139831 5526982 ~ 5552311 (-) True AMCG00007152
AMCG00007163 mRNA upstream 41369 5734674 ~ 5752971 (-) True AMCG00007163
AMCG00007167 mRNA upstream 133320 5826625 ~ 5841867 (-) True AMCG00007167
AMCG00007168 mRNA upstream 165546 5858851 ~ 5859267 (-) True AMCG00007168
AMCG00007170 mRNA upstream 179471 5872776 ~ 5896585 (-) True AMCG00007170
AMCG00007173 mRNA upstream 314424 6007729 ~ 6054064 (-) True AMCG00007173
TU26789 other downstream 634736 5056787 ~ 5057406 (-) True G21429
TU26778 other downstream 642622 5042520 ~ 5049520 (-) False G21426
TU26783 other downstream 643303 5041659 ~ 5048839 (-) True G21426
TU26061 other downstream 3521572 2167310 ~ 2170570 (-) False AMCG00007059
TU26054 other downstream 3546327 2144716 ~ 2145815 (-) False AMCG00007059
TU27087 other upstream 123504 5816809 ~ 5820284 (-) True G21632
TU27173 other upstream 314335 6007640 ~ 6014169 (-) False AMCG00007173
TU27501 other upstream 1806142 7499447 ~ 7506875 (-) True G21942
TU27830 other upstream 2699891 8393196 ~ 8396224 (-) True G22200
TU28289 other upstream 4494009 10187314 ~ 10190204 (-) False AMCG00007289

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00067947 True 1507 mRNA 0.50 2 NC_007118.7 38601949 ~ 38612230 (-)
grasscarp (Ctenopharyngodon idella) CI01000026_10695298_10696443.mRNA True 1765 mRNA 0.45 2 CI01000026 10694795 ~ 10696652 (-)
rainbow trout (Oncorhynchus mykiss) TU594550 True 3318 lncRNA 0.43 2 NC_048570.1 56960763 ~ 56972189 (+)
eurasian perch (Perca fluviatilis) TU44033 True 4721 lncRNA 0.44 1 NC_053114.1 40920334 ~ 40925054 (-)