AMCG00007059


Basic Information

Item Value
gene id AMCG00007059
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 2142675 ~ 2196855 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007059
ATGGCTTCTAGTTTGAGGAGTGGGCATAACTACCCCTGCTCCTGGCACCGCCGCTGCCCGGCCCCTGCCCGCGGACGGAGAGCCCCAGCATGTCCCTGTCGGAGGACCGGGGAGGCACCTGTCTGTCCCAGGATGCGCACGAACCGGTTCGGGCCACCGAGGGTAAGAGCTGTGCGATCCGTCATGCATGTGATCGGCGTCTCTGTGCATGGGAGCCTCTCGGGAGAGCAGCCTTCACAGGGCGAACACCTCCAGCACAAACACGCAGCTCGCATGGGCTCCGCAGATCAAGGGAATTATGAAACCTCAGCATATTCTGCACTTCCACAGGATCCAGTGGCTACAGTCGGGCCCTCTCAGTTGTTAGCTACACTACTGCTGACCGAAGAGGAGACTATTTCAGTCATTGATACAGATCCACCTGGGTCGGCAGGAAGCACAACAGACACTGTATCGAGTGACAGCCCTACATTCCAATCAATGCTGACTCTGATAACCAGCGCGAAAACTGTCCAAAAGCCCCAGACTCTAGTGCAATCTCAAACTTCCCCAATCGTCTCCAACAAcggaaaccaaacaaacaggTGGCCTTCGGAGGTTTCCACTGGAGAAGCTGTGCCTTCTTCTTCAGCATCTGCAGTGACCGCCGTCACTTCTTCAGGCCCAGCAATATCCACCTCAACTTTTAATACTCACTCTTCTTCTAGCGAGATTTCTTTGGTAAGTACGGAATTGGAGACTCTATCTTCAGCGATAACAATGGCTTCTGATATCACCAGCACCCTTTTGTCTTCATCAGCCATTCCAGCTGAAGTCTCTACATTTCAAACGCATACCACCAAACCTCCCCTGTCCAGTCCCCTAACATCTCCCCATACATCATCAACTTCCCTAAGGCCTCCTGTTGTTACAACTGCAAATTCTACTCATTCTCTCATTACAGAGGAAATAACCACAGCTCCAGTGTCCACTTTCTTTACGACAAAGGGGACTGAAGCTCCAACCCCTGAGAGTGAAACCACTCTGCCTGCTATAGTACCGTCAACTGCCAttgcaataaataacacaaaaccaGTTGCTGTTGAGAGCACGTCTACACGAGTGGTGACAACAACCCTTATGCACACAACCCAAGAAACGGTGACTTTGCCACCTACACCTATGACCACTGTGGTCTCTACCACTGCCATAGTCAGCACAACAGAAACAGTCACGCCACCCCCTTCTACGATGGCGTCAGTAACCAACACAGGGGCCTCAGTGACATCGAGAGGAACATCTACACCCCCAGAGAGTAGAAAAACCCCCTCGTCTCCTTTGATCACGCTAACTTCAGCCTTGACTTCCATGGTCACCATCACATCTCACTTTTGTCCCTGCGAAGAAACAGAGCTGATGACACAATTAAACAGAATCTTACCAAAGGACTCACACAGGCACTCCAGAAAGCTTTCAACAATAGCAATTGAAAACCTGACCAGCACTACCAATGTCACAGTTGGTTACTATGCTATCAGCGACAGAACCGTCTACATTGCTTCTGTTGTTGTCGAGGCTCTGAACACTTATGGGTATGACAAGCTGATGAGTGATATAAAGCAGTATGTGTCTGACGTGCAGTCGATTCAAATCCCCGCCACTCCTTGGATACCCAGCCCTGCTATCTTCTTGCAACTCAAAACAGGACCAACAGACAATATCAAGTCCTGCAGTTTTGTCCAGACTATGGAGCAGCGATTGCAGAACGCGTTCGCAGAAGCAGAGTCCAAAGTGCTGAACTCCCAAAATCACCTGTCTGTTCAGATTTTAAGCACCTCCCAGGCCGTTGGCTCTCCGGCTGTCACTCTGATCTACTTCGTCCGAAACCAGAGTGTGATTCTGAATGGGACTGTTTCCAGCAACCTTCTCAACCAGCTGACCGCGGAcaTTGGAGTATCACAATCTGAATACTTCACAAGCAACAAGAGATTACTGGTAATTCAGGATGTTGACAACTCCTCTCTGGAGGTGAATTATCAGAGCTTTGCCAGTCTAATGGAGCAGCGCTTGGCTGAGCTGTTCGTGATTGCAGGGCAGCAGGGAAGAAGGTTCAGGCGAGCCACCACAGTTGGAAGTTACACTGTCCAGATGGTCAACATTAAGCGAATCCCAGGTCCCAAGAACCCTGCTGAAATGACCTACTATGTCCTGAGCAATGGCACACCTTTACCAGGAACCACAGCAGCCAAAATCCTCAACACTGTGGACTCCCAGACCATGGCTCTGACACTGGGCTACTTTGTGCAGCTGCAAGCTGAACCGGTGGTGAAGAACCCCCCCAACAACCTGTGGATCATCGCCGCCGTGCTGACTCCCATCGCAGTGGtgaccatcatcatcatcatcatcgcgGCGGTGCTGTGCCGCAAGAACAAGAGCGACTTCAAAGCCGACACCATGGGAAACCTGCACCCACGCGCCAAGCCAGTGCAAGGGTTCGATTATGCTAAGCAACATCTGGGGCAGCAAGGTGGGGAGGATGAAGCCATTCCAGTGACCCAGGAGACTGTGGTACTGCCACTGCCTGTCAGAGACGCGCCCCTGTCACAGGAACGAGGGCTGACGCGTGACGGAAGCCCCACGAAGAAGACCCTGTCCAGAGAGATGCGTAAAAGCAGGTTGCCTAGCGAGGACGGCTCCGTCATCAGTACCGAATCAGGGAAGCTCAACTCCGGCAGAGGTTCTGCGCAGAAAGTAACAGCGcagcagaaaatgacaaaagagGAATTGAGGAAGAGAAATGCACCAATGAGTGATGAAGAGGAGGGTGCAGTTCTGTTTGACCGAGTGTCCAGGTCTTCAGCAGATCCCTTCGACACATCCTCTGGGTCCCTGCAGCTAATCTCCATCAAACCCCTGGCAGTGCCCCCCAGCTACTCTCACCCTTCCTCTGACAGGAGCCAGGACTCGGCGGTGATCAACGGAGAGGTTAACATGGCTTTGAAGCAAAAATCAGACATTGAACACTACAGGAACAAACTCCGTCTCAAGGCCAAGCGGAAAGGGTACTATGACTTCCCTGCGATAGACAGCAACAGCAAGTCCATCACACACAGGCAGAAGCAGGAGTACGAAAAAGCACAAATGGAACTCAATAAGGTTTTAGACCCTGATGAAGAAATATCCTCCACATACGTTAAATCAAGAAGCAGACAATCACAAACGAAGAACCCTGCGTACCGAAGCAGGCAGTCGCTGAACAGCCCCAGCCCGGGCGGGACTGAGATGGACCTCCTGGTGACGAGAGATAGGCCGCGGCGAGGGATCCGCAACAGTGGATACGATaCCGAACCCGAGCTGATAGAGGAGACCAACGTGGACCGTGCCGTTGGCTCCAGGGGCTACACCCGCAGTcgtcaggtcaaaggtcattcGGAGACGTCCACCCTGAGCTCCCAGCCGTCCATTGACGAGGTGCGGCAGCAAATGCACCTGCTCCTGGAGGAGGCGTTCAGCCTCGCCTCGGCCGGCCACACCACCAACAATCGGCTCCAAGGGACGTACAGTCCCGGACAGCAGATACCGTACTCTGAAGTGGTGACGAGTGCCCCTGGCACCATGAACAGGCCCAGAGCAGGAGTTCAGTGGATGCCAGCCTACGGACCAGATGTGTACCAGTACAGTCTGCCAAGGCCTGCCTTCAGGTTCACTCAGCTTCCTGACATGGCGATGGGCTCCCCACCTCCCCCCATACCCCCTAGGACTGGGCCGGCAGTAGTGACATCACTGCGACGATCCTCCTCAGATATTGGGGCGAAAAACAGGACATCAGAATCCGCCGTCCCTGAGCAGCAGAGTCAGCACGACAGCGCCTCCTACGTGCCGATCACCAGAGCCCCGGTTCCCTCTGCCACTGTGGAGCAGCCCATTTCAAACTACTCAGGAAACCCAGCACCAGCAGTTTATGCGATACCAGCAAACCGGCCTGGATACACGGGCTACTTcatccccaccccccctgcCCCCTACAGGAGTCAAACCTGGATGCCATACCCCCCCGAAGGAGACGTGCCCAACCAGTGGGCCGAATCTGTTCCCCTTCCAGGCTACGTGGAGGCCTATCCCCACTCTCGATACCAACAACCCAGCCCCCCGAGGGTCCCTCGCCACTACAGCCAGGCCTCCCCCGTGCATCGCTCGCTGGAGCACCCTCCCACGCCCTCAACCGCTGCCTCCCAGCAGAGCCTGACAGAGAACGACGCCTCAGACCCCTCGCTCACCAACATCTCCACCGCTGCACTCGTCAAGGCAATAAGGGAAGAGGTGGCCAAACTCGCCAAGAAGCAAACAGACATGTTTGAGTTCCAGGTCTAG
>TU26054
GAGACGTCCACCCTGAGCTCCCAGCCGTCCATTGACGAGGTGCGGCAGCAAATGCACCTGCTCCTGGAGGAGGCGTTCAGCCTCGCCTCGGCCGGCCACACCACCAACAATCGGCTCCAAGGGACGTACAGTCCCGGACAGCAGATACCGTACTCTGAAGTGGTGACGAGTGCCCCTGGCACCATGAACAGGCCCAGAGCAGGAGTTCAGTGGATGCCAGCCTACGGACCAGATGTGTACCAGTACAGTCTGCCAAGGCCTGCCTTCAGGTTCACTCAGCTTCCTGACATGGCGATGGGCTCCCCACCTCCCCCCATACCCCCTAGGACTGGGCCGGCAGTAGTGACATCACTGCGACGATCCTCCTCAGATATTGGGGCGAAAAACAGGACATCAGAATCCGCCGTCCCTGAGCAGCAGAGTCAGCACGACAGCGCCTCCTACGTGCCGATCACCAGAGCCCCGGTTCCCTCTGCCACTGTGGAGCAGCCCATTTCAAAC
>TU26061
GCCATAGTCAGCACAACAGAAACAGTCACGCCACCCCCTTCTACGATGGCGTCAGTAACCAACACAGGGGCCTCAGTGACATCGAGAGGAACATCTACACCCCCAGAGAGTAGAAAAACCCCCTCGTCTCCTTTGATCACGCTAACTTCAGCCTTGACTTCCATGGTCACCATCACATCTCACGTGACCAAGGCTACAACAGCTCCTGGACAAAATATATCTACTTCCCATACTTCCGCCACAGAAACCTCTCTACTGCAGTGTAACACTACAGAAAGAATCTGGGTGAAAACAGTTTTGTCCCTGCGAAGAAACAGAGCTGATGACACAATTAAACAGAATCTTACCAAAGGACTCACACAGGCACTCCAGAAAGCTTTCAACAATAGCAGTGTGCACGCCCAGATTGAAAACCTGACCAGCACTACCAATGTCACAGTTGGTTACTATGCTATCAGCGACAGAACCGTCTACATTGCTTCTGTTGTTGTCGAGGCTCTGAACACTTATGGGTATGACAAGCTGATGAGTGATATAAAGCAGTATGTGTCTGACGTGCAGTCGATTCAAATCCCCGCCACTCCTTGGATACCCAGCCCTGCTATCTTCTTGCAACTCAAAACAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007059 True 4353 mRNA 0.54 22 2142675 2196855
TU26054 False 501 TUCP 0.61 3 2144716 2145815
TU26061 False 625 TUCP 0.48 3 2167310 2170570

Neighbor

gene id symbol gene type direction distance location
AMCG00007060 NA coding downstream 217792 1915302 ~ 1924883 (-)
AMCG00007052 syt9,LOC106573278,LOC106561481 coding downstream 280502 1844655 ~ 1862173 (-)
AMCG00007053 NA coding downstream 318138 1821951 ~ 1824537 (-)
AMCG00007054 NA coding downstream 348036 1759494 ~ 1794639 (-)
AMCG00007051 NA coding downstream 386333 1755590 ~ 1756342 (-)
AMCG00007058 NA coding upstream 8273 2205128 ~ 2218145 (-)
AMCG00007057 hipk3,LOC105899775 coding upstream 41312 2238167 ~ 2244432 (-)
AMCG00007062 NA coding upstream 93548 2290403 ~ 2297881 (-)
AMCG00007063 NA coding upstream 105528 2302383 ~ 2310199 (-)
AMCG00007065 NA coding upstream 129757 2326612 ~ 2346701 (-)
G20795 NA non-coding downstream 412196 1676304 ~ 1730479 (-)
G20802 NA non-coding downstream 415508 1722556 ~ 1727167 (-)
G20726 NA non-coding downstream 761565 1378456 ~ 1381110 (-)
G20676 NA non-coding downstream 1150676 990555 ~ 991999 (-)
G20614 NA non-coding downstream 1206173 906596 ~ 936502 (-)
G20908 NA non-coding upstream 3198 2200053 ~ 2308118 (-)
G20914 NA non-coding upstream 89969 2286824 ~ 2288618 (-)
G20947 NA non-coding upstream 230304 2427159 ~ 2427421 (-)
G20965 NA non-coding upstream 351149 2548004 ~ 2548289 (-)
G20976 NA non-coding upstream 432242 2629097 ~ 2637796 (-)
G20630 NA other downstream 1189613 952236 ~ 953062 (-)
G20609 NA other downstream 1224846 845929 ~ 917829 (-)
AMCG00007001 NA other downstream 1728549 408839 ~ 414126 (-)
AMCG00006997 NA other downstream 1780381 356618 ~ 362294 (-)
G20397 LOC100846954 other downstream 1882439 259583 ~ 260236 (-)
AMCG00007072 NA other upstream 448050 2644905 ~ 2663649 (-)
AMCG00007091 ckap5,LOC108269026 other upstream 1279213 3476068 ~ 3500670 (-)
G21426 NA other upstream 2844804 5041659 ~ 5049520 (-)
G21429 NA other upstream 2859932 5056787 ~ 5057406 (-)
G21632 psmc3,prs6a,LOC107758446 other upstream 3619954 5816809 ~ 5820284 (-)

Expression


Co-expression Network