AMCG00007052 (syt9,LOC106573278,LOC106561481)


Basic Information

Item Value
gene id AMCG00007052
gene name syt9,LOC106573278,LOC106561481
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 1844655 ~ 1862173 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007052
CGGCTCAGTATTCGTGCTAGTGGTGCCTGCCCGTGTCCTACAGCAGACCATCTATACTGTGTCTTCTGTCTTGCAGATGTCTCTGTGAGCTTGCTGTCTCTGGTTGTAACGGCCTGCGGACTCGCTCTGTTCGGAGTCTCCCTGTTTGTGTCATGGAAGCTGTGCTGGATCCCATGGCGTGAGCGCGGATTCTCGACTGGAACCAAGGAGTGCCAGCCGGAGCAGGCCACCTACACCGATGTGGAGGTCAACGACAATGAGTACAGTGAGGACTACATGAAGGAGCCACCCGTCCTGCCAGAGTCGGCCATGAAGATCAGTCACACGTCTCCTGACATCCCCCTGGAGGCCCAGTCCAAGGGGAAGGAGAACTGCATCCACAATGCGCGGATGCAGAGGCAGATCACAGAGCCCACTTCTTCGGTTCGGCACAATTCAATACGGAGGCAACTAAATCTCTCCAACCCGGACTTCAACATTACACAGTTTCAAAGACAGGAATCTCTCACTGGGCTTGGGAGGATTAAACCAGAGCTGTACAAACAGAGGTCAGTTGATACAGACGACGGCAGGAGAAGCAACAACAAATCCTGTGGGAAGCTCAATTTTATTCTCAAATACGACTGTGACTTGGAACAGCTGATTGTCAAAATCCACAAAGCACAGGACTTGCCTGCCAAGGACTTCTCTGGCACCTCTGACCCATATGTCAAAATCTATTTACTCCCTGatcgaaaaacaaaacatcagacTAAGGTGCACAGGAAAACACTGAACCCCGTGTTTGATGAGGTGTTTTTATTCCCAGTGGCCTACAACGAGCTGCCCACACGAAAGCTGCACTTCAGTGTGTACGACTTTGACAGATTCTCCAGGCATGACATGATTGGCCAGGTGGTAGTAGACAACTTTTTAGATTTGCCTGATTTTCCAAGGGAGACAAAACTCTGGAGGGATATCCAATATGTCACCACAGATAATGTGGACCTTGGAGATCTCATGTTTTCGCTGTGTTACCTTCCAACTGCTGGAAGATTAACTATTACTATGATAAAAGCAAGAAATCTGAAAGCCATGGACATTACAGGTGCATCAGATCCATATGTAAAAGTTTCATTAATGTGTGAAGGACGAAgattaaagaaaaggaaaacatcaacaaaaagaaacacattaaacCCCGTCTACAATGAAGCCATAGTCTTTGATGTTCCTCCAGAAAACATTGACCAAATTAGCCTTCTTATAGCTGTAATGGACTACGACCGTGTAGGTCACAATGAGGTCATCGGCGTGTGTCGAGTGGGCAGCGATGCCGAGACTCTGGGTCGAGATCACTGGAATGAAATGCTGACATATCCTAGGAAACCTATAGCTCACTGGCATCCCCTGGTTGAGtggGTTGGACAAGCACCAACAGGTGGAAGCCAAGGCGGTTCTTGCAATTCTTTGAAGGCCCCCCCTTCaccataa

Function

symbol description
syt9 Predicted to enable several functions, including calcium ion binding activity; phospholipid binding activity; and syntaxin binding activity. Predicted to be involved in calcium-ion regulated exocytosis; cellular response to calcium ion; and regulation of secretion by cell. Predicted to be located in clathrin-coated endocytic vesicle membrane. Predicted to be active in hippocampal mossy fiber to CA3 synapse; plasma membrane; and secretory vesicle. Predicted to be integral component of synaptic vesicle membrane.

NR:

description
PREDICTED: synaptotagmin-9-like

GO:

id name namespace
GO:0006810 transport biological_process
GO:0008021 synaptic vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG:

id description
K19909 SYT9; synaptotagmin-9

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007052 True 1473 mRNA 0.48 6 1844655 1862173

Neighbor

gene id symbol gene type direction distance location
AMCG00007053 NA coding downstream 20118 1821951 ~ 1824537 (-)
AMCG00007054 NA coding downstream 50016 1759494 ~ 1794639 (-)
AMCG00007051 NA coding downstream 88313 1755590 ~ 1756342 (-)
AMCG00007047 NA coding downstream 146822 1659504 ~ 1697833 (-)
AMCG00007046 NA coding downstream 191343 1637115 ~ 1653312 (-)
AMCG00007060 NA coding upstream 53129 1915302 ~ 1924883 (-)
AMCG00007058 NA coding upstream 342955 2205128 ~ 2218145 (-)
AMCG00007057 hipk3,LOC105899775 coding upstream 375994 2238167 ~ 2244432 (-)
AMCG00007062 NA coding upstream 428230 2290403 ~ 2297881 (-)
AMCG00007063 NA coding upstream 440210 2302383 ~ 2310199 (-)
G20795 NA non-coding downstream 114176 1676304 ~ 1730479 (-)
G20802 NA non-coding downstream 117488 1722556 ~ 1727167 (-)
G20726 NA non-coding downstream 463545 1378456 ~ 1381110 (-)
G20676 NA non-coding downstream 852656 990555 ~ 991999 (-)
G20614 NA non-coding downstream 908153 906596 ~ 936502 (-)
G20870 NA non-coding upstream 309731 2171904 ~ 2172483 (-)
G20908 NA non-coding upstream 337880 2200053 ~ 2308118 (-)
G20914 NA non-coding upstream 424651 2286824 ~ 2288618 (-)
G20947 NA non-coding upstream 564986 2427159 ~ 2427421 (-)
G20965 NA non-coding upstream 685831 2548004 ~ 2548289 (-)
G20630 NA other downstream 891593 952236 ~ 953062 (-)
G20609 NA other downstream 926826 845929 ~ 917829 (-)
AMCG00007001 NA other downstream 1430529 408839 ~ 414126 (-)
AMCG00006997 NA other downstream 1482361 356618 ~ 362294 (-)
G20397 LOC100846954 other downstream 1584419 259583 ~ 260236 (-)
AMCG00007059 NA other upstream 280502 2142675 ~ 2196855 (-)
AMCG00007072 NA other upstream 782732 2644905 ~ 2663649 (-)
AMCG00007091 ckap5,LOC108269026 other upstream 1613895 3476068 ~ 3500670 (-)
G21426 NA other upstream 3179486 5041659 ~ 5049520 (-)
G21429 NA other upstream 3194614 5056787 ~ 5057406 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000028_08595383_08629444 SYT9, SYT9A coding CI01000028 null 8595321 ~ 8629528 (+)