G20908


Basic Information

Item Value
gene id G20908
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 2200053 ~ 2308118 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU26116
GCAGCTCGGAGAGACGTGTTAGACTCAGAGCAGGAGCGGGAGGATCGGCAGGGCTTGAGGGGCAGCCAGTCCCTGTTACACCGCAAAAACATGGGCTTTGCCGCTCTCGCAGCCCAGAGCAGAGCGACCTTCACCGAAAGCAGAACTCATTAGCTACACACTGGACTTGGTCTGACCCCGCTGGGTGATTTTATATGTTGTTCAGAAGACTAAATGTGAGGAACAATGCTTTTGGTCAGTCAGATTGCAACTCCATACTTTGCTGAATAGAGAGTTGAAGGATCGTTCGTGCAGAGCTTTCATATCCGACCCAACTTTGTAAGTTTGATTTCTTAACCACTCCAACTCCTTATTTCATTGAGGACAGTGTGTATAACACTGCGATTGTGCCTTGAGAATCTGTGGTTCAGATGACTGAATTGATGCTTGCCTGTTCTCCCCCACTGACAGTGTGGTATTGTTTGAGAAGGGgatattattaaaaatcacaaatctaaaaaaagaaaaaaaaatcaaaggtcTGCAAGAGAAACCTAATGAGATTAACAGTGATGTATTCAGCCACTTGGAAGTGGCAGCTTGACCAAAAATGACCGTTTCATGCTTCTCATAGTCATTCCGGGGATCGAAATACTGCAGTCCGAGCTATAGTAGGAGAAGAGCACGCTACTTCTCAAGATGCTGCCACTGAGGAATTGTCAGTTTCCTctgttgtttcacaatgtaTCGCCCACCCACAAACCATCAGCATGTTACACCATGGCCTCCCACCAAGAACTGCTTTCACCACTCGCTCGGTTCATCTTTGCCTCTTGGAATAACAGGAAGGTACAAAATTTGCTTCATTTGATCAAACTATTTCTGCACTCTAGAGCCTGTGCTGAAATCTTTCCCAAGAGATGCTTCTAGTTACTGCTGGAGCAAAGAACCTGTAGGTGCCCAGAGCTAATTTTATCCTTAATTTGAACATGCAGAACCAAATCGATAtctcaaagcaaacaaacaaaccaataaacaaaaatgttcctCTGGTCTGTCATGACTAGCAAAGTAAGTAGATATGCAGAACAGTCTGTGGACTTGTTCTCAGTGCTTAACATAGAGGAACATTATCCAAACACTTCTGGGGGAGGGGGATGCTCTGTGGTAATTGGTGAAATGCTCGTATGAGGTGTATTGCCATGCAGAAAGTGCTTCTAAGATCACAGTAGTTGCAGGAAAAAGCCCACCCGTTCGCCTGTATAGAAACTAACAACATGAATGGCTGTAACTGATGTGTTGTACCTTACTGGTTTGTAATTAATAAGCCACATTTGTTGCCTAAATCAAAAAAGGGCCAAAGCTGTAACTGGAAGCAAGCAGTCTGTTGCTATTTCTAAAACcattgcatttcagtttatGACTGCTTGCTCTTCATACCAAACAACAGAAATGGAGGTCTCGGTTGAATGTAGGCATTTCACATCTAAAAGTGCATGACCATGATGTAGTGACACACGATGggttttttctttcaatcttGTCTAAAAAGCATGTGGAATTTTAACTGTATTTCGATTCCTGTGTAATGGTGTTTACCAGCAAATATGCCTGCACAAAATCTCCATGTTAGCCAAAACGAAATATAGATTGCAGTGGGTTCAATTGTCAATAATTCAGATTGCACAGACAAATCCATCAATCTACCGGTTTTACCAtctaaaaaaaatgatttttttaaacatttctattttgaaGCATAGTgaagttttgtaaaataaaaaaataaaccaaacactgcagtttttaaacttccattataatatttaattttaaattttgcaaattattttatatatatatatatctgattGGTATTACTCTTTTAGAGATGCTTAAGAAGTTAATTCAGGGTCTTTGTATTAATCCAATGTGCTACTGTATTAATCTTAAATCCTAACTACTTGGTTTGAttgctttagattttttttattattattattattattattatttcccttttattttcaaattagctgtgtttgtaaaagttaatTCACGCTGCAAGTTATGGAATAATCTGTTTAGATTACACAGCAAATAGACTTGATAAGTTTGAACTgttactgttttaatatttgtagatttttgtggctttttcttttttttgcttttgattttatgCTACACTAGTTTGCCATGTAGCAATTGCACTGtgcaatatttacaatatgaGGACTGGGAAATTAAATTTTATGGATGTAATGTCTCTTACAGTTTGCGATAGTATTTCTCTCTAGTTCTCAGTGATTTAAATGTGACCAAGCCTTCTGTACTTTGTCACAAAAAGCGGGTTTTCCAGGTGACTATTTTGGTGAGTGTCAAAATAAGAATTTATGGTGTATTATTGTCAAGATtcactttgaattaaaaatatctatTGCTGCAGCAATTGGCTtgtgattattttctgaataattgTCGTTATTTTCGATATAATAGATGCAATGATTTTTAAATCGCCTCCATTCAGCTACAATGTGCAATCTTAAAGCGTAATACATGTAAAGGGCCAATAATCATCgcaatatttac
>TU26117
ttttcttttttttttttttttttttatgCTACACTAGTTTGCCATGTAGCAATTGCACTGtgcaatatttacaatatgaGGACTGGGAAATTAAATTTTATGGATGTAATGTCTCTTACAGTTTGCGATAGTATTTCTCTCTAGTTCTCAGTGATTTAAATGTGACCAAGCCTTCTGTACTTTGTCACAAAAAGCGGGTTTTCCAGGTGACTATTTTGGTGAGTGTCAAAATAAGAATTTATGGTGTATTATTGTCAAGATtcactttgaattaaaaatatctatTGCTGCA

Function

NR:

description
PREDICTED: ubiquitin carboxyl-terminal hydrolase 31-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU26116 True 2574 lncRNA 0.37 2 2200053 2254560
TU26117 False 292 lncRNA 0.31 2 2200200 2308118

Neighbor

gene id symbol gene type direction distance location
AMCG00007060 NA coding downstream 275170 1915302 ~ 1924883 (-)
AMCG00007052 syt9,LOC106573278,LOC106561481 coding downstream 337880 1844655 ~ 1862173 (-)
AMCG00007053 NA coding downstream 375516 1821951 ~ 1824537 (-)
AMCG00007054 NA coding downstream 405414 1759494 ~ 1794639 (-)
AMCG00007051 NA coding downstream 443711 1755590 ~ 1756342 (-)
AMCG00007065 NA coding upstream 18494 2326612 ~ 2346701 (-)
AMCG00007066 NA coding upstream 41920 2350038 ~ 2363800 (-)
AMCG00007067 eif3m,LOC107758039,LOC107671036 coding upstream 68018 2376136 ~ 2382023 (-)
AMCG00007070 rcn1,LOC102786392 coding upstream 154036 2462154 ~ 2475341 (-)
AMCG00007071 NA coding upstream 288960 2597078 ~ 2629005 (-)
G20870 NA non-coding downstream 27570 2171904 ~ 2172483 (-)
G20795 NA non-coding downstream 469574 1676304 ~ 1730479 (-)
G20802 NA non-coding downstream 472886 1722556 ~ 1727167 (-)
G20726 NA non-coding downstream 818943 1378456 ~ 1381110 (-)
G20676 NA non-coding downstream 1208054 990555 ~ 991999 (-)
G20947 NA non-coding upstream 119041 2427159 ~ 2427421 (-)
G20965 NA non-coding upstream 239886 2548004 ~ 2548289 (-)
G20976 NA non-coding upstream 320979 2629097 ~ 2637796 (-)
G21020 NA non-coding upstream 594444 2902562 ~ 2903620 (-)
G21034 NA non-coding upstream 614542 2922660 ~ 2923027 (-)
AMCG00007059 NA other downstream 3198 2142675 ~ 2196855 (-)
G20630 NA other downstream 1246991 952236 ~ 953062 (-)
G20609 NA other downstream 1282224 845929 ~ 917829 (-)
AMCG00007001 NA other downstream 1785927 408839 ~ 414126 (-)
AMCG00006997 NA other downstream 1837759 356618 ~ 362294 (-)
AMCG00007072 NA other upstream 336787 2644905 ~ 2663649 (-)
AMCG00007091 ckap5,LOC108269026 other upstream 1167950 3476068 ~ 3500670 (-)
G21426 NA other upstream 2733541 5041659 ~ 5049520 (-)
G21429 NA other upstream 2748669 5056787 ~ 5057406 (-)
G21632 psmc3,prs6a,LOC107758446 other upstream 3508691 5816809 ~ 5820284 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_023975 hipk3a coding NC_007136.7 CM002909.2 15287036 ~ 15351444 (+)
rainbow trout (Oncorhynchus mykiss) G124170 NA non-coding NC_048566.1 CM023220.2 24250939 ~ 24253089 (+)
striped catfish (Pangasianodon hypophthalmus) G121572 tcp11l1 non-coding NC_047601.1 CM018547.1 25620461 ~ 25682477 (-)
bowfin (Amia calva) G114548 LOC104962440 non-coding CM030135.1 CM030135.1 2609143 ~ 2609412 (+)
mexican tetra (Astyanax mexicanus) G106217 NA non-coding NC_035908.1 CM008311.1 24907148 ~ 24907931 (+)