XLOC_023975 (hipk3a)


Basic Information

Item Value
gene id XLOC_023975
gene name hipk3a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 15287036 ~ 15351444 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00047597
AACGCGAGCGCGTTCTCGAGCGCTCAGCTGAGAAAAAGCTCGGGCGAGTTGAGCTGACAGAGTTTGTCCGAAACCGTCAAGAGGAAACAAACCAGCGGGGACTAAAACGTCCTCGAAATGACAACAAAAACCTTCTCCGACCGACACGGATATCCTTAACTACAAGCTGGACTGCATTCGGTCCCCGTGAATGGCTTAGCAGGCGAGTTATGCGCAGTTGAAAATGAGGGAGCTTGTGTTTTTTTCTCCCTCGTCGTCCAGCGAGAGGACAAGATGGCAGCGCGTCGAGCATGCAGCGGGTGCGAATTAAAGCCCAACATGTTCACTAAACACCCGCAGAACGACCACAGTTGCTGTCTGTGAAGGTATGGCCTCACAGGTTACGGTCTGCCCACCACATGTTTATCAACCCCAGACAAGTGCCTTTTGCAGAGCGAAGAAAATTGATCCCAGCAGCTGTGTTTACCATGAGAAGATCCCTCGCACTTATGTGGTCGGTGTGAATCTAGGCATTGCGCACCCTACAGATATTATACCTTTATTGAGATTTGAGGCTTTGACTAGTGAGAAACCCTGCCCTGCTCGGAATTTCTCAAAACAGACTGAATCAGCTCCACAGGAGCTCCTCAGAAGGGCTTCTTCGCCATACAATCGTGTGGCGTCGGAGGGCAAACTTCAGTATTTCTCTAAAGCAGAGGTTGGAGTTGAAGAAAAAAGTGGAGACAGTGGCCAAAACAGCCAAGGTAGTAGTAGAAGCAGTGGAGGTGCTCCAGAAGGGGTGAGGAGAAAGGAAAGGAGCGGTGGCTTGAATTCAGACGAGGGAACCCAAAAATGTGGGTTTAAATGCAAAGGACAGGAGATTGAAAATAGCAAGAGCATCATGCAGATAGTAGAGGAGCATTCGACTCTACCTGCCATGTTGCCAACAAATGTTGGGAGCACAACTGCGGTAGGCGTTGCCCCGCCCGAGCAAAAGGGAACCGGGACAGGAGCTGTGAACGGCACAGGCGATGGTGACTATCAGTTGGTCCAACATGAAGTGTTGTGCTCCATGAAGCACACCTATGAAGTGCTGGAGTTCTTGGGACGTGGTACATTTGGTCAGGTGGTCAAATGTTGGAAACGAGGCACAAATGAGATTGTGGCAGTAAAGATATTAAAGAACCACCCCTCGTATGCCCGCCAGGGTCAAATAGAGGTCAGCATCTTGGCCAGACTAAGTGGGGAGAATGCAGAGGAGCATAACCTGGTTCGGGCTTTCGAGTGTTTCCAGCACAGAAGTCACACTTGTCTGGTTTTTGAGATGTTGGAGCAGAACCTGTACGACTTTCTCAAGCAAAACAAGTTCAGTCCGTTGCCACTGAAGGTTATTAGGCCTGTGCTGCAACAGGTGGCCACTGCACTGAAGAAGCTCAAGAGTTTGGGCCTGATCCATGCAGATCTTAAACCGGAGAACATTATGCTGGTAGATCCCGTCAGACAGCCCTTCCGTGTGAAAGTCATTGACTTTGGCTCTGCCAGCCACGTCTCCAAAGCTGTATGTTCAACATACCTTCAGTCTCGCTATTACAGGGCTCCGGAGATCATCCTGGGCTTACCCTTCTGTGAGGCCATAGACATGTGGTCGCTGGGCTGCGTCATCGCTGAGCTCTTCCTGGGCTGGCCGCTTTATCCAGGAGCGCTGGAGTATGACCAGATCCGCTACATTTCTCAAACTCAAGGGTTGCCAGGAGAGCAGCTTCTGAACGTGGGGACGAAGACGGCACGGTTCTTCTGCAAGGAGTCCGATTCACCGTACACTGCCTGGAGACTGAAGACGACGGAAGAGCACGAGGCAGAAACGGGGCTAAAGTCCAAGGAGGCGAGGAAGTACATTTTCAGCTGCCTTGATGACATTGGACATGTGAATCTAATGCTCAACATGGAGGGCTGTGACCAGTTGGCAGAGAAAGCTGACAGGAGAGAATTCGTGGACCTGCTGAAGATGATGCTGATGATTGATGCCGATCAGAGAATTGCCCCTTCGGATGCACTTACTCATCCTTTTGTCACTATGCAGCACCTGATGGATTTCCCCCATTGCAACCATGTCCAGTCTTGTTTCCACATCATGGACGTATGTCATTTAAGAACCAGCATCTTTGATACTCTCAACCGCAACAAAGCACCGCCACTCATGAAGCCCGTGACGCTTCCAAGTGCTCCAAATATCACTGTCGCCTTCAACAAAATGCCATCTGTCCACTCTCAGACCCTGCCGCCGTCTGCTCCACCTGTGGTGCATCCTGGGATTCCCATCCAGACCGGAAGCGCCCAGTTTGGGTGTAACGAATCTTTTCAGCAGGCGCTCATTCTGTGCCCTCCTGCAATGCAAGGAATCCCTTCTAACCCAAATCAGCCAGCCGGGTATTCGGTTCGAATGGAGAACACCATTCCTCTGGTGACCCAAGCCCCAGCTATCCAGCCCTTACCCATGAGGCCTGGAGTTATAGCACAACAGCCGTGGTCCAACAGAACTCCACAGATCTTGGTGCCAGCTTGGCAGCAGGTCCCGCCACCTGCTACGAGCTTGGCATCTGATACAGTCGTCGGAGCGCAGAGGCGAGGAGACTGGGGGAAAGTGCGACCACACAGCAGCCATTACAGTTCAGTGATGCCCCAGCCTATTGTTCCTAACCAAATGGCTGTGTCAGCCCATCAGCCTATAAACATTGGCATCGCTCATGTTGTCTGGCCTCAACCTGCATCTAACAAGAGGAACAAACCAAGCCAGAACAGAAGTATGAATGTGTCGCATTTCACGGACACGCAGCCCTCAGTGTGTCCATCACCAAAGATGCCGGAAATGTTGCCGAGTGTGGAGCCGCAAACTAGCTCTCCAGAAAGAGCAGTGCAGGCCCAAGTGAAGCAGGAGCCAAAGCAGACAGAGGAGGAGGAGAGCTGCTGTAAGACAACAGTGCCCAATAAGCAGCGAGAGTCCATCATTATCAGAGAGTCGCCCAGCCCGGCGGTTAGTGTCATTAGCATTAGCAGCGGCACAGATGAGGAGGAGGAGCAAGCGCAGAGGTGCTCCCTTAACAAATGTAAAGGCAGTCCAGAGTGCGAGGCCTGCACAGGCTCTCTAAACATGGAACGTGTGTGTTCCCTCAGCAGTCCTGATAGCAGTCTGAGCACCAGCTCTTCAGCCTCAGCACAATCCAGCCCTTCACCATGCAAAAGACCCAGCAGTATATCGGAAGATGACGGCCATGAAAGTGGTTGTGAAACAGTAGATGGGTCACCCCCCTCAGACTCCTCACTAGGACCCCATGAAAGTCCCTTCCCCGAAAGACGCTTCCTGCGCAATCAAAACCAGAACCAGGAGCCACGGGCCAGACGTGGACATCCCAACAACACAGGGCTGAATAAGCCTGCAGTGAGAACAGTGGTGGTGCCGCCCATGAGAGTGCTGAATAATAACCATCATCCCAACAATGAGCACCTTGCAATCAGCACAGtcttcGAATCCTCTTGCCAGTCCAGAAGTCGCTGCGGCCCAGGACGACTGAGCCACCTTTCCACCCCCACGCTACCCCGCCAGCAGAAACTGAGCTCTTCATTCCAGCCACAGCCGCTAGGCTTTGGCCAGGTCCAGCATTACGGCTCCTGCCACAAGGAGTGGAACGGCAACTACCGGCAGCCGCGCAGACCGCAGGCCTTCATCCCGCCCACTGTCCACGGCCCTACCTTTCCGCTTCCCCACGGCAGTCCCACACACTCAGCCGGCCACCCGCCGCCTCCCGCCCTGCTCTCCTATCCGCCTTCCGCGCCCGTGGCCCACCTCTTGCCTTCACCATGCCCACCGCCGGCGCCTCGGCCCGTCTTACAGCCCGCCTACAGCCTGGTGCACCACCAGGGCATCAGCATGGGCATCAACCACAGGCTTCTGCCCTCTCCCACCCTTCTCCCGCAGGGCCAATTCAAAGCCCTCTTTCCCCCGCACTCCTATGTGGCGTCGCCCGCCTACGCCGGCTTCCCCCTCAGCCCCAGCAAACTCAGTCAGTACCCGTACATCTGAGCTGGAGCCCACGACAGCCACGCGCACGCAGCCGGCACTGAGCCacgaccactttcctcctctttCCTTTTCTTATGATGTTTCATGATGCAAATCGAGCTTTATTCAGAGATCATGGAGAATTAATTAAACCAACGAATGCGTGAGTGAGCGAATGACtgagtggattgaacacaaaactcacttttaatgtgttttttgcaCATTTGATACAACAAAATTTCCCATAGTCGCAGCAGGACCCCTCCCATATGCTATTTTTCGATATTGCCTTCTGACGTGCGTATTAGACACAGTGACTCGTCAAAGCCATCGCtgtctccagtgtgtgtgtgtgtgtgagtttcctTGTACGTATTTTTTTCCGTAGACGTCCCACGCTCCTCAGTGTTAAGTCCCGGTGTTGAAAAGGTTGTCACGCTGCATGTCTTTTTGCATGGGCTAAAAACCAATGTTGGACTCTCCAAAAAAAATTTGGGAGGGGAAGGCCTGCAAATCATCGCTTTTCGCTCCTCTGTGTATTTGTTGTAAGACTTGCTGCATTGAGTCCATTCGGATTCAATAAACAGTGCCTTAAAAATACGTGTTGTTGCAAATTAACCCAGAATCCCATGTGCAGTCACGCGTGTATCAGACTGCAGCACTTGAAACTTTTTCAATCATtcgttgtgatttttttttcttttttttttttaaatattagggcTGTTTCATTGAtcttttcatctttctttctcaTGCTTTACATAATCTCGGTGTCGTTTGCGATTTTTATTTAAGTCATCTCTTTAGGGTCGCGACGGGTGTTTTTCGTTTTGGGTGTCGACAATGAAATCACCCCGAGTGCATGAATTGTACAGgcgaaaaatgttttgtttaatgccTTAGATGAATTGCGCATTATTGGAAAGCAGTCCTCTTTTTGTACGTGTGGTATTTACAAGGTGGACGTATTGCGTCGAGCGGTAGCAacgttagattttttttttttttcattttctccctGAGGATAACGTGCCGTAGCAGAGGCTGATAAACTATGTACAGAAACGTTTGCGTACTTTCATCATTGATAATCTGTTTCTACTCTAATAGTATTTACACTGTTTAATGAAACTGCAATACAATCCATAGTTttcggggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttttcattttctttccatcGATTCTACGTTAATTTTAGAGTTAGAAGTGTTATCGGTGTTGGATTTGTATCAGCAGATAGCTCTTTTATGATATTGTATGGTTTCATGTTTGCTTTGTGCAGAATTATTTCAGTATTGAGTATCCAACTGTAAAGTCTATCATTGCTGGAGTATTCAGTGCTTTATAAGACGAGATGGTTGATGGTGTGCAATTTTCCTCATAGATGCATGTGACCAGATTTGGATTGTTTTGTAttctctttcatttaattttgcttGTTATTGGACGCTGGCTGTTTTAATTTCAAACATTCCGTCAGGGAGAAatagctttgttttattttattttttttctgtgtgtgcttattttagatttaaagttttgtttttcatttggtgCGTTCATTTATTATGCTTTCGCTACACCAAAGACAGTAATTCATTTCTTAAGCAGAGTAGCTACTGTTTTAGCGTAGACCTCGAAACGTAGTTGtatttaacagatttaaataaacacaaattatatgtataaaaaatgttgAGGTTGATGTTTAGCTTTTTTCGGGCAAGTTCTGACTTTGTTTCATTTATTCTTGAATGTATCATAGATAAGCTGCTATATACTGATTGCCACTTCATTATAGCTGTGAAATTAGATGATTAACTTTGTTCTTAGCCTTCTTATTTTTATATACGTCTAATTATTCTTGAATTAGAAGTGAGATGATTTTTGTTTTTCGTTTGTTTGCTTTGGGTTTTATCGTACTGACTGGCATCAGAAGCGTTTTAATGCctctctgttttagtttcttttcaTTTGAAGTGTCATTGTAACTACTGTATTGCAAGTAATGgagtttttgctttttatttgattttgtgcGCGTGTGGGGTTTGTATTTTTACGTTTCGTTTGCATCAGTGTTTTATCTGTTGGGCTAATCTTGCGTATTAGATGCATATTGGTATATATCTATCTTAGTACgtatatatatttgcattttgTTAAAGCATAGCTTGCAGGATAGATTTAACTCGTTTGTTTTAAGCATCGATATGAAGTCTGTATTTGACGACCCAGTTCTTTTACCATTTCAGTAATGCCGTTAGCACTTGATACTTTGGAGAAACTAGCTACAAATTCGGGTTTGGGTATAATGAATCATCTCATCTCGGTAACTACAGTGCTtataattttgtttataattattaatttctccctttactattattattgtacatACGTGCGCACACAAAAAGTATCAGGTGTATGAATTGAATTCCAACAATGCGTGCGTTTTAAAAACGGACTGTTCATTAGCTCCTGTTCTCATTCTGTGGGCCGTTATAGGAGTGTGCTCGTTCCCTTCTCTTTAAAGCGAGATTAGTGCCTTTGAAATGTGCTTCAGACCTTTATATCCCTTTTGCAAACACTGCCTGCCAGCCTCTTCCTCTCTTTCATGCTCTCGGATGACGTGAAAGCTGCGGCGTTTGCTAGTCAGAAGTGCTGTTAGCAACTTTTGCTTCAAAGTAGACAACCATCAGACGTGGAGAACCCGACAACTTAACCAACGTATTAGTCATGCAATGCAGTAAATCACCTTTAAGGATTGTTTTCTCAGTGGTGGAAATTAAATCCAATCATGCTTGATGCTATTTTTATGACCAAGAAACGACGACAACAAACAATAATGAAATGATATCAGGGATTGTTGTTCTTTTATTCTTCTTATTCCTATTATGCTGACTATAAACACCCAAGACACGGTTTTTTCTCGTATTTGGGAAGCTTTACATGATACACTGTGAATGTAAACCACATTTTGTGAAGTAGAAAAATGATCCCTTTTGTTTTTGCAGCGTCATGAGATATATTACAGTCCAAAAAAGCGGCGCGGTTCCTCATAGTTTGAGCCCGCTGTATTTAGCATGTAGCACTAGAGATGAGTACTAAATTGCTACTCATGGGCACATTATATGAATTCTATCACATTAGCTCACAACATAGGTCTAACTAAACCCAACCTACCAAGAGTGAAACTTGAGGGATTTGAAGACGAAGCTAAAAGTTGAAATGACTCCCAAAAACCAAACCGTTTGAtttcatgcttttatttcttGTACAGTTAATTCAGGGTCCTTGTATTTGTCATATGTGCTACTGTGTAACACTTGCcgatttcttttgtgttttgggTTGGATTGCTTTAGATCTATTTTTAACTCTTCTGCGAGATTATATTTTAGTACAAGTTAAATCTCACTGCAAGTTATCGGATAATATTTAGAGTTAAGAGCAAACAGACTTGATTTACTAAAAATCTGAACTGTTACTGTTTTCATATttgtacatttgatttttttgtggcttttgttttattttctgtttgcttTCGATTTCTATGCTACATTAGTTTGCCATGTAGCCACTGCACTGTGCAATATTCACTATATGAGGActgggaaacttttttttttttagatgtaatgTCTCTTACAGTTTGCGGTCGTATTTCTCTCTAGTTCTCAGTGATTTATATGTGACCAAGCCTTATGTACTTTGTCACAAAAAGCGGGTTTTCCTGGTGACTATTGGTGAGTGTCAAATTAAAGAAATTATGGTGTATTGTCAAAATTCActttgaattaaaatatatattgctgcGGGCACACAA

Function

symbol description
hipk3a Predicted to enable protein serine/threonine kinase activity and protein tyrosine kinase activity. Acts upstream of or within cellular response to xenobiotic stimulus. Predicted to be active in PML body and cytoplasm. Orthologous to human HIPK3 (homeodomain interacting protein kinase 3).

GO:

id name namespace
GO:0018105 peptidyl-serine phosphorylation biological_process
GO:0018107 peptidyl-threonine phosphorylation biological_process
GO:0006468 protein phosphorylation biological_process
GO:0071466 cellular response to xenobiotic stimulus biological_process
GO:0005634 nucleus cellular_component
GO:0016605 PML body cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0004713 protein tyrosine kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061207-54 Predicted to enable protein serine/threonine kinase activity and protein tyrosine kinase activity. Acts upstream of or within cellular response to xenobiotic stimulus. Predicted to be active in PML body and cytoplasm. Orthologous to human HIPK3 (homeodomain interacting protein kinase 3).

Ensembl:

ensembl_id ENSDARG00000062469

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00047597 True 7933 mRNA 0.45 16 15287036 15351444

Neighbor

gene id symbol gene type direction distance location
XLOC_023974 tcp11l1 coding upstream 1446 15273370 ~ 15285590 (+)
XLOC_023972 AL929172.2 coding upstream 152318 15134602 ~ 15134718 (+)
XLOC_023970 NA coding upstream 160732 15100538 ~ 15126304 (+)
XLOC_023971 AL929172.1 coding upstream 167306 15119597 ~ 15119730 (+)
XLOC_023969 NA coding upstream 252452 14931982 ~ 15034584 (+)
XLOC_023976 kiaa1549la coding downstream 2651 15354095 ~ 15482419 (+)
XLOC_023977 NA coding downstream 132829 15484273 ~ 15486780 (+)
XLOC_023978 BX323543.2 coding downstream 136050 15487494 ~ 15489644 (+)
XLOC_023979 BX323543.4 coding downstream 138768 15490212 ~ 15490667 (+)
XLOC_023980 NA coding downstream 189322 15540766 ~ 15609995 (+)
XLOC_023973 CR762411.1 misc upstream 68927 15217824 ~ 15218109 (+)
XLOC_023966 CR388067.1 non-coding upstream 602689 14684233 ~ 14684347 (+)
XLOC_023985 NA non-coding downstream 715433 16066877 ~ 16075816 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000115_01601547_01635051 HIPK3A, HIPK3 coding CI01000115 null 1599841 ~ 1635648 (+)
bowfin (Amia calva) G20908 NA non-coding CM030123.1 CM030123.1 2200053 ~ 2308118 (-)