G121572 (tcp11l1)


Basic Information

Item Value
gene id G121572
gene name tcp11l1
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 25620461 ~ 25682477 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU143455
CTGCagcaatatatattttaattcaaagtGAATTTTGACAATACACCataatttctttaatttgaCACTCACCAAATAGTCACCAGGAAAACCCGCTTTTTGTGACAAAGTACATAAGGCTTGGTCACATAGAAATCACTGAGAACCAGAGAAATAACGACTGAAAACTGTAAGAGACattacacacttaaaaaaaaaaaaaagttcccagTCCTCATATACTGAATATTGCACAGTGCAATGGCTACATGGCAAACTAATGTAGcgtaaaaataaatcagaagcAAAAACGTATTAGAAAGCCACAGAAACCTACATGTATTAAAACAGTAACAGTTCAGATTTAGTAAATCAAGTCCACTTACTCTGATGTCTAAATCTATTCTCTGATAACTTGCAGTGAGATTTAACTTCTACTAAAATATAATCTGCAGGAAAAAAGAAGGTTAATAGCTCTAAAGCGATCAAACCCAAACATTAGGACAGAAACTGGTATACAGTAGCACATGTGACAAATACCAAGACCCTGAATTTCAGTACACACGTCtctaaaaggaaaaacaacaaacacttcAACCAATCGAGAGAGAACACGCAGTAAAGTAAAAACAAGCCAAATACAATTGTTTGGTATGATGGGAGTACTTTATCAGTTTGAACGTGATTAGTAAAAGttttcggtgtgtgtgtgtgtgtgtgtgtgtgggggtggcGGTCCgggaaaacctgtcagatgttgctgccaaaaattatgaaaaaccTGGTTTGAAGTTTTCTCTTGTGAAAATACTTTGACTTTTCTACTTTgagataaacacacattcatccaaatgacatggaaatatatatatttttttactttctaaccttgccttggtgtcttcctgcaaagatcatgttgcaTAAGGAGGCAATTTAACAGACGCGGTGGtcaaaacagtcagtctgctgAAAGTTTGCTAGCTGTGTGTGAATTCCTCACACACTGAATGCCAAGATTTGATCCAAGTTGTTAGAGctacagaaacagagagaaggcTAATCCACCGAGAGCTTACACACTcggttttaaaatgttaaatgacctaataaaaatacattaacaacATGAAattcagtccaaaaaaaaagtgaaaatgaacagagatcagagagagtGCAGAGATGaccatgaagtgtgtgtttaaacctcacagtgatgagacagagaagGTGACGGGGATGATGCTGATAAAGTGAGAACTCGTTTCCTGTTGTAAACGTAGAATTCTTTCAAATTTGGCAGTAGCACTGTTTAACAATCAGCGGATTAGGGACATCTTTAAGAGaaactggaatgaaatctttagatttgctttttttttttttaaattaaactcatTATAGTTCCAGAGCAATTTTCAGAACTATGTTTTGCACAAAATATGaccatgtgaaaggttttcccaggctgccacacttATACTTGCTCAATTTTAGTTCTCCATTTGGGTTTTTGGTAGATTTTGTCTAAACACAGatttgaaacaaacaaaaaaaagtctgattatTGATGCAATGCATAATTGTACAATATCTGTATGAGTGTGTACTTCTATGTGTACTTGCCCCTAGTGCTACATGCTTAATAACATCGTGTATAAAAGTGAAATGAGTTTTTGATTTCGTGGCTCCACAGCCACATTATTTTTGGACCAAATCTTTAAGTACATTAAAGCAAATAACGTGCACATTGGTATGAACGTTGTGTCCCGTTGAAGACAGAGTttgctgcttaaaaaaaatggcaggaCGAAGTGGTAAACTGCGGGATGATGCTTATTCCAAGCTTATTACAATCACAGTGTACTTATGTAAAGCTTCAATACGGGAGAAAGGACCACGTCAGCGGAACAGTAATGATCCCTGATAGCATTTCATTATTGGATTTCTGTTGTTGGATAttagcccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaggcaaaggaagggaaaaaaaaaaaagaaacacacacacacacacacacacaagcaaacaagttaaatgaaatgtatggatttaaaaattttaaataaaaatctcatgTGAAGACATCACTGCATTGCATGTTTGGCGTCTGACTGCCAAGTGACACGAACACTACCAAAGACGAAACTAGAGCGGagaaaaaacaccacacacactactggAAGCCAGTGCATAACTAATTTTTCAACACTAAGAGGTCCAAAAGAgtcaagaacacacacaccacaagatAAAACACTTTAACTGACCTCGCAAGCGAGAATAAGAGAGATCTGggtcgctgtgtgtgtgtgcgtgtgtgtgcgtgtgcgcgcacAGGACATAAAGGTCTGAAGCACATCTGGAAGGCACTAGTTTAGCGCTGCTCCTTCTACAGAGCAGAATACGGGTGTGTGACGAGTTCCACACCAACACCGTGAGAAAAATGGCCGCCGGTACTAATCATGCATCCGGGAATTCATTCATATTGACAACGCAGTCGTCGTATTAGCCGAACAAGTACATCAGGCataatctataaacatggaCTGactgaaatcaaatcaaaagtAAATGCTCAAGACTTTTGAAATACATGCTGATTAAACATTAAGCACTGCAATCGATTATAAACAAGCAACACTTCTTCCTCAACTCTGTGCAAGTGACAAACCGGAATAATGTATGATTTCATAGCGGcacatttttctccatctcAAATCAATCGATAAACACATccacggaaaaaaaaaaagaaaagttaaatcTATCCTGCAAGCTATGCCTTATCGAGATACTAATATATATCTATACGTACTCTGATATACACCAATATGCATCTCATATGCAACGATGAGCCCCAAGATTACCATTAACACTACAGATAATACACGGATGCAAACGAAAAGATTAAGAAAAATCATAAACAGAGAACACACCCCAAAAACACGCCAAACCAAAACTTCCATCAATCGCAGTACAGTAGTTACAATGACACTtcaaacagaaaagcaaaataTACATAGGCATTAAAACGGGTTCGATGCCGCTCAGTAGAgtaaaaccaaaagaaaaaccTCACGTCTATCTTAAGGTCGTCGAGAcacgtacaaaaaaaaaaaataagaaagctaAGAACAAAGTTAATCACGTTACCCTCACAGCTATGACGAAGTGGCGATCAGTGAATAGCAGCTTATCTATGGTACATTCAAGGATAAATGAAATCATTAAACTTGCCAAAAAAGCTAAACATCAACCTCAACCTTTATACAGAgtacacttcttttttttcttttttttttttgtttaatacatcCCCATCTAGAGTAATATCTGAGGTCTAGGCTAGAACAGTAGCTACGTCGCTTAAGAAATCAATTACTGTCTTTGGTGTAGcaaaagcatttttaatataatgatagcaaaggaaaaaaattcttaataaaaacacaaagcacattagaaaaaaacaaatcatttctcCCTGACGGAATGTTTCAAATTAAAACCAGCCAGCACTGAAAAGCTCAACGGTACGGCGCGGACGAGCGGAAACGAATCTCGCCACGTGCTTATAGAAGGGGGGGGGGGGATTGCACACGACCAACTCACACCTCAGGAAAGCACTAAATACTCCAACAATGACAGATCGACAGTTAAATACTGAAATCTCTGCACAAGCTAACAGGAAACCACGTCAATGATTTAAAGAGCTATCTGCAGGTTAATGCCAATaccaaaaaaatacacatctaATTCTAAAAAATTAGAAtagtgaataaaaaacaaacacccaGAAACGATGGATTGTATTGCAGTTGTGTTAAACAGTGTAAATACTGTTAGTATTAAGTAAAAGAGTAGCAACTGATTATCAGATAGgaaatgaaatcaaaactgTACATAGTTCATTCGGTGAGAACGCCTGCTACAGCGAAAACATGCCGAGCGATCAAaggaaatccacacaaaaaattacaaaacatcACACCAGTGATCCCCCATACACAGGGCGCTTTAAATTAAAACCATCCGAGAGGAAAGGATCCGCTCGTCCACCAAAAACCGAGCAGGTCTAACGTCAAAACCTCCCTCGCAGACTCAACAGTGACGGAAAAACCCAGAAGCCTTCTCCATAGTGACTGAAAAGGGAATTTCTACTCTACCTCTTGCTTGGTAGGTCTTGTCAAATAGTAATgcgtaaaatatatatatatatataatcagtaCAGCAGGAGTGGAAGAGGGAGGAAGAAATGCATAAGGGTTACAGCCTCAACACTTCCATAACaagcacaacagcaaattcatgaagaaaaaaaaaaaaattagggagAATTGAGAATGAACACAATGTATTCATGTCATTAATGTCATTCCTAATCCACTTTGCAATAAGGGATGATCTTTTTACACGACACTGATGTACAGACCGCACGGTGACTCACTAACAGAACAAAACCACCGAAAATCaatccagacaaaaaaaaaaaataataaaagacagCCTTAATGTATgaatcaaaagaaaaaaggtgaaaTTTCAAGTGCTGCAGTCCTGTTGCAGTCATGTGAATGCAAGTGTGTCACGTCACACCCTGCacagacatgattttttttttataaggcaCTTTTTGGAGGGATCAGGTTACACTcgtaaaaacacacaaagtgagTTCTGAGTCTTATGTTTCCTCCATGCAGAGTGTAGTAACCTTAAAATAAGGGATGTTGTAAAGGAGTTAACACTGGGAATGAAGGGGCATGAGTCTGTTACAAAAATACAGACGTGTAACACCAACAAGAGGGAgtcgcacgcacgcacgcacgcacgcgcacacgtGTGGGCCCTACCACCAGACTGGGATGGCTTCACCAAGTCACATTTAGAAGGCAATATAGAAAAatagctatagagagagacaataTCCCATCATGCCCCTGTATACAGGAAAGGATTTAATGATGGATTTAATGGGGGTTATTCTTCTTTTCAATATCAAATGTGCAAAAGGCATGAAAAGTGAGTTTTATATCAAGTTTTCATATACcaagtttttttcttccatgATATTTGTTTCGAATGCATTAAACTCCACGATTTTTGGAGACAAGAGTGTCAGAGCAGTAAGGGGCCCTggggttggtgt
>TU143456
CTGCagcaatatatattttaattcaaagtGAATTTTGACAATACACCataatttctttaatttgaCACTCACCAAATAGTCACCAGGAAAACCCGCTTTTTGTGACAAAGTACATAAGGCTTGGTCACATAGAAATCACTGAGAACCAGAGAAATAACGACTGAAAACTGTAAGAGACattacacacttaaaaaaaaaaaaaagttcccagTCCTCATATACTGAATATTGCACAGTGCAATGGCTACATGGCAAACTAATGTAGcgtaaaaataaatcagaagcAAAAACGTATTAGAAAGCCACAGAAACCTACATGTATTAAAACAGTAACAGTTCAGATTTAGTAAATCAAGTCCACTTACTCTGATGTCTAAATCTATTCTCTGATAACTTGCAGTGAGATTTAACTTCTACTAAAATATAATCTGCAGGAAAAAAGAAGGTTAATAGCTCTAAAGCGATCAAACCCAAACATTAGGACAGAAACTGGTATACAGTAGCACATGTGACAAATACCAAGACCCTGAATTTCAGTACACACGTCtctaaaaggaaaaacaacaaacacttcAACCAATCGAGAGAGAACACGCAGTAAAGTAAAAACAAGCCAAATACAATTGTTTGGTATGATGGGAGTACTTTATCAGTTTGAACGTGATTAGTAAAAGttttcggtgtgtgtgtgtgtgtgtgtgggggtttaGTAAAACAGCCCAGATGGATGGTTTTAGCAAATTCTTCGCATTTATGGGAATTTTACAGAGCTGCTGAGGTGATGTGGTGgttattttgtaataaagatAATATTTTGAGGCCACAAATTATTACTGAGGTGATGAGATAACTAAATCATGGTCATGAATTGTGCAACTTGAGCCCACGACTTAACACATAACCTCCAGTTGCTTACTTGTCAGGAACGGGTGAAACATATTTTAGAGAATTTGCACAAAGTGACACAACACCAGAGACTCCAGTATGTGTTTACGCCTCATTCCAAGGTTGAAGCGTAATATTATCAATCATCTACATTCTTAGGTTCCTGTAACCATAACGGTCTAAATGAATTGATTTCTCTGTCTCagtcattttaatatataatagcTGCTATGGGTTAAGCACTTTGTGTCCATGAAATAGATCTCGAAAAGCTTAACTCAAGCCCTCAACTTATTATCTCATGGCCTCCATATAATAATTCATGGCCACATGTCATTTCAGTGGCTCTTTTAAACACAGATGACTTCTGAAAAGCCACGACAGCTATGCCGTGTTCTAATGCGGTCATGTGTTCAGTGTATTTCAGCAGATTTCCAAACCCTATTCATTACAAAGTCAAAATCAACTGATAGCTCAGAATTTCAAGGTTGAGCTTCCTCAACATGGTGGAATCCACGGTCATTTGGTTTTGCGGTCGATGCGTAATTACATCGTAAATGTAATGTTGATATTCTTGATGATTTTTGTCATCTCCGCTGTCGCTATGCCTTTACACTGTCCTCATCGGCTACGTCCTAGCTAGCTAAGCCGTTATCCTCAGTCAGTAGTTAGCTTTACTCAGCATCTATGTTTcccagttgcttagcaacagcGTTTTCACAACTTGGACCGCGTAAAACTAATTCACAAGCCTGTCCGAACGCACTATATTACAACAGACGTCAGTCAGTGACTTGTTTAATAACAGAAACTGATTTATTATGAGCTCCTAATgccatttaaacattaaaaacccTACCCACCCTCCACACCTTCAACTGGCACAGAACAAAAGCAAGAATGAAAAATAagtttttggttgttgttttttttttttttaataccaattCTTTAAGCTCAACTGACTGATCCCTGATAATATAACGGCAGGATAGGAGGCTCtaaatgtttaatcagtgaTATAAACCCTTTGCTAGTGTTGACAGCAGGTGAGCTTTGGGGAGATAATCAGCAAATCCATTAACCCAGTTGTTTCTAGGACCCTACGGTAGGGTGCCTGGTTCATTCTAGTCGTCAGTTTTGTTTGACGCTGCCTAAGTGGCTGCGCTTCCCCCGGCCTGAACGACGTCTTGTAGGAGTTTCCGGTAGAACGGCGAGTAGACGAGCTTGTTGAAGTTCACGAGGTGGCTGAGTCTGATCCCGACATCCTCCAGCTCTTTGCTGATGGGAACCAGACCTCCGGGGACAGCCGGCGGGCTCCTGTGAGGACCCGGTTCCAAGAAGCCCAGGAGGTAGGTCTGGATCCGAGAATCT

Function

symbol description
tcp11l1 Predicted to be involved in signal transduction. Orthologous to human TCP11L1 (t-complex 11 like 1).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU143455 True 5166 lncRNA 0.38 3 25677257 25682477
TU143456 False 2259 lncRNA 0.40 2 25620461 25682477

Neighbor

gene id symbol gene type direction distance location
LOC113546502 ccdc73 coding downstream 15338 25582366 ~ 25605123 (-)
trnam-cau_26 NA coding downstream 16260 25604129 ~ 25604201 (-)
trnam-cau_25 NA coding downstream 16931 25603458 ~ 25603530 (-)
trnam-cau_24 NA coding downstream 17546 25602843 ~ 25602915 (-)
trnam-cau_23 NA coding downstream 18161 25602228 ~ 25602300 (-)
LOC113546550 LOC108269377,LOC107572419,LOC107745926,LOC106573223 coding upstream 452542 26135019 ~ 26141217 (-)
LOC113546507 ovch1 coding upstream 464426 26146903 ~ 26157160 (-)
dkk3b LOC108269371 coding upstream 512355 26194832 ~ 26205600 (-)
si:ch211-266k8.4 NA coding upstream 706386 26388863 ~ 26448995 (-)
LOC113546506 LOC108268458 coding upstream 767102 26449579 ~ 26453245 (-)
G121584 NA non-coding downstream 2136 25617733 ~ 25618325 (-)
G121583 tcp11l1,LOC107572299 non-coding downstream 3203 25616283 ~ 25617258 (-)
G121582 NA non-coding downstream 4574 25615121 ~ 25615887 (-)
G121581 NA non-coding downstream 5901 25613973 ~ 25614560 (-)
G121566 NA non-coding downstream 64032 25556039 ~ 25556429 (-)
G121724 LOC108269023 non-coding upstream 255960 25938437 ~ 25942918 (-)
G121761 NA non-coding upstream 334394 26016871 ~ 26017092 (-)
G121816 LOC108268991 non-coding upstream 417070 26099547 ~ 26106174 (-)
G121873 NA non-coding upstream 489075 26171552 ~ 26260472 (-)
G121981 NA non-coding upstream 681071 26363548 ~ 26365314 (-)
G121585 NA other downstream 1151 25618612 ~ 25619310 (-)
mapk8ip1a LOC108268451 other downstream 1002346 24585356 ~ 24618115 (-)
cacna2d4b cacna2d4,LOC108268693,LOC107574657 other downstream 1503527 24079841 ~ 24116934 (-)
LOC117597766 NA other downstream 1808569 23811702 ~ 23811892 (-)
LOC117597751 NA other downstream 1809963 23808602 ~ 23810498 (-)
lrrc29 LOC108268915 other upstream 1544482 27226959 ~ 27237260 (-)
cep290 cep290 other upstream 1864869 27547346 ~ 27591334 (-)
G123154 NA other upstream 2526636 28209113 ~ 28212830 (-)
LOC113546677 NA other upstream 2645783 28328260 ~ 28329458 (-)
LOC117597737 NA other upstream 2686552 28369029 ~ 28378004 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) G20908 NA non-coding CM030123.1 CM030123.1 2200053 ~ 2308118 (-)
mexican tetra (Astyanax mexicanus) G207471 NA non-coding NC_035920.1 CM008323.1 23606440 ~ 23612598 (+)