G121583 (tcp11l1,LOC107572299)


Basic Information

Item Value
gene id G121583
gene name tcp11l1,LOC107572299
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 25616283 ~ 25617258 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU143479
caaaatgctaaataaatatctccttacagaaaactgcaccatatcaatgattataatttttaacgATTTATACtagtccatgttttttttttttttaataacaacatTTTCCCCTATCCCTATTCCACACATCTTACAAGCCATGGTGCTGTagtttaaataagaaaaagtcCCTCACTAGGCTGTTTGTTGAGAAACTCCTGAAACTTGTTCCTCTCGTACTCCACGGAATGCTGCAGCAGGTGCGGCCGGAGACTACTGACAGCAAAGTTGGCCATGTCAATCTTCATTTTGtccaacactgcaaaaatagaTCTGCGAGGCACAGAATATAGTTGTACTCTATAAATACTGAAATGGGATCAACACAAAGGCAAAGACAGCTGTGACTTCCGTACAGAATTACACATTTGGAGAAGGTCACTGAATCTTCCCTCACCTAAAAAGAAGCACGATGTCCGTGATGTCCCGCAGTTTGCGGACTTCTTCGTCCCTACACGGCGCACAGAAGGCGCCCATGGTGTTGATGATGAACTGAGCCACCTTGCTGATGTCCAGGGCACCGTTCTCCGCCTGCTGCTGGATGAGCGACAGGTCCAGTGCCTCCTCTATCTGTCCTTTCAAACGTGTCTGGTATGGCATCAGGAAGGACAGCAGTGTCTAAAGAGGGCAGTTAGAATTGAATTGcaatggcaagaaaaaaaaaaacctatacaGACAATGAGACCTAATGAGGTCTTGTTTACATTATGGAAACTAGCTTCACAGGCCCAGTTAGACATTTAGATGAAGAATTAATTTGACTAATTGGCATAAATATCAGACCTGAGACAATATTACACAGTCAGTAACAATTCTTCACTTGATTAAAGCTGAATTTATTACTTTGAATGCCTTTATGCATTATGACTTGGCCAACATATAGATTGGTTGATTCATCTTATCTGTATGCCATATTGTCTGCATAAGCTATTTG

Function

symbol description
tcp11l1 Predicted to be involved in signal transduction. Orthologous to human TCP11L1 (t-complex 11 like 1).

NR:

description
PREDICTED: T-complex protein 11-like protein 1 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU143479 True 976 lncRNA 0.41 1 25616283 25617258

Neighbor

gene id symbol gene type direction distance location
LOC113546502 ccdc73 coding downstream 11160 25582366 ~ 25605123 (-)
trnam-cau_26 NA coding downstream 12082 25604129 ~ 25604201 (-)
trnam-cau_25 NA coding downstream 12753 25603458 ~ 25603530 (-)
trnam-cau_24 NA coding downstream 13368 25602843 ~ 25602915 (-)
trnam-cau_23 NA coding downstream 13983 25602228 ~ 25602300 (-)
LOC113546550 LOC108269377,LOC107572419,LOC107745926,LOC106573223 coding upstream 517761 26135019 ~ 26141217 (-)
LOC113546507 ovch1 coding upstream 529645 26146903 ~ 26157160 (-)
dkk3b LOC108269371 coding upstream 577574 26194832 ~ 26205600 (-)
si:ch211-266k8.4 NA coding upstream 771605 26388863 ~ 26448995 (-)
LOC113546506 LOC108268458 coding upstream 832321 26449579 ~ 26453245 (-)
G121582 NA non-coding downstream 396 25615121 ~ 25615887 (-)
G121581 NA non-coding downstream 1723 25613973 ~ 25614560 (-)
G121566 NA non-coding downstream 59854 25556039 ~ 25556429 (-)
G121482 NA non-coding downstream 233046 25382958 ~ 25383237 (-)
G121425 NA non-coding downstream 380776 25232714 ~ 25235507 (-)
G121584 NA non-coding upstream 475 25617733 ~ 25618325 (-)
G121572 tcp11l1 non-coding upstream 3203 25620461 ~ 25682477 (-)
G121586 NA non-coding upstream 7669 25624927 ~ 25626813 (-)
G121724 LOC108269023 non-coding upstream 321179 25938437 ~ 25942918 (-)
G121761 NA non-coding upstream 399613 26016871 ~ 26017092 (-)
mapk8ip1a LOC108268451 other downstream 998168 24585356 ~ 24618115 (-)
cacna2d4b cacna2d4,LOC108268693,LOC107574657 other downstream 1499349 24079841 ~ 24116934 (-)
LOC117597766 NA other downstream 1804391 23811702 ~ 23811892 (-)
LOC117597751 NA other downstream 1805785 23808602 ~ 23810498 (-)
LOC113528756 LOC108268501,LOC103028890,LOC108416834,LOC107574299,LOC101068009,LOC107716653,LOC107753697,LOC107661481 other downstream 2048295 23563831 ~ 23567988 (-)
G121585 NA other upstream 1354 25618612 ~ 25619310 (-)
lrrc29 LOC108268915 other upstream 1609701 27226959 ~ 27237260 (-)
cep290 cep290 other upstream 1930088 27547346 ~ 27591334 (-)
G123154 NA other upstream 2591855 28209113 ~ 28212830 (-)
LOC113546677 NA other upstream 2711002 28328260 ~ 28329458 (-)

Expression


Co-expression Network