LOC113546550 (LOC108269377,LOC107572419,LOC107745926,LOC106573223)


Basic Information

Item Value
gene id LOC113546550
gene name LOC108269377,LOC107572419,LOC107745926,LOC106573223
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 26135019 ~ 26141217 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026946484.2
CAAAGGTCAGAGTGTTGGTGAGAGATAGAGCTAAAgtagagctaaactcacacagtGCACAGATCAGAGAGGACAACATGGAGCAAACGCTGATGTTTCCCGTGCTGATTGGACTCGTAGCAGTGTTAGCCACagtccttttcttcttcctgaaTGCAGGAAACTctgaagggagaaaaaaaatgagcaagcTCCCCAAAACTCTGCAGGATCCCAGTGTTAAATATCCGCTGCCCCTCATAGAGAAGGAGGACATTTCACACGACACGAAGAGATTCCGCTTCGGTCTTCCCTCTCCTCTTCATGTGCTCGGCCTTCCAGTTGGTCAGCACGTGTACCTGTCTGCTAAAGTCAATGGGAACCTGGTGATCCGAGCTTACACTCCCGTCTCCAGTGACGAGGACCAAGGACACGTCGATCTAGTCATAAAGGTatattacaaaaacacacacccaaactaCCCTGATGGGGGCAAAATGTCTCAGTACCTGAATGATATGAAGATCGGAGACACCATCGACTTCCGAGGGCCAAACGGCCTGCTGGTGTACAACAGCAACGgTCAGTTTGCTATAAAGCCTGATAAGAAGTCTGATGCCAAGCTGTGGAAGTTTAAACATGTGGGAATGATCGCTGGTGGTACAGGCATCACTCCAATGCTGCAGCTTATCCGCAGTATCACAGCAGATCCTGCAGATGATACCAAGTGCTCCCTTATTTTTGCCAACCAGACTGAGAAGGACATTTTGTTAAGGAAGGAACTGGAAGAAGTCGTGAAGAGTCACCCTGATAAACTCCACGTATGGTACACACTAGACCGACCTCCCCAagGTTGGGAGTACAGCACAGGATTTGTGGACACTTCAATGATGAAAGCGCACCTTCCTCCTCCAGCCAATGACGTGCTGATTGTGATGTGTGGCCCGCCCCCGATGATCCAGAACGCATGCCTGCCAAACCTCACCAAACTCGGCTACGACCCACAAAACACTTTCACATACTGACTCCATCAGatacatttgtaaaataaatattaaatatataaa

Function

NR:

description
PREDICTED: NADH-cytochrome b5 reductase 2-like isoform X1

GO:

id name namespace
GO:0016126 sterol biosynthetic process biological_process
GO:0001878 response to yeast biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004128 cytochrome-b5 reductase activity, acting on NAD(P)H molecular_function

KEGG:

id description
K00326 E1.6.2.2; cytochrome-b5 reductase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026946484.2 True 1046 mRNA 0.48 9 26135019 26141217

Neighbor

gene id symbol gene type direction distance location
LOC113546502 ccdc73 coding downstream 529896 25582366 ~ 25605123 (-)
trnam-cau_26 NA coding downstream 530818 25604129 ~ 25604201 (-)
trnam-cau_25 NA coding downstream 531489 25603458 ~ 25603530 (-)
trnam-cau_24 NA coding downstream 532104 25602843 ~ 25602915 (-)
trnam-cau_23 NA coding downstream 532719 25602228 ~ 25602300 (-)
LOC113546507 ovch1 coding upstream 5686 26146903 ~ 26157160 (-)
dkk3b LOC108269371 coding upstream 53615 26194832 ~ 26205600 (-)
si:ch211-266k8.4 NA coding upstream 247646 26388863 ~ 26448995 (-)
LOC113546506 LOC108268458 coding upstream 308362 26449579 ~ 26453245 (-)
smc1b smc1b,LOC108268457,LOC108441496,LOC107732790,LOC107686632 coding upstream 312138 26453355 ~ 26470026 (-)
G121816 LOC108268991 non-coding downstream 28845 26099547 ~ 26106174 (-)
G121761 NA non-coding downstream 117927 26016871 ~ 26017092 (-)
G121724 LOC108269023 non-coding downstream 192101 25938437 ~ 25942918 (-)
G121572 tcp11l1 non-coding downstream 452542 25620461 ~ 25682477 (-)
G121586 NA non-coding downstream 508206 25624927 ~ 25626813 (-)
G121873 NA non-coding upstream 30335 26171552 ~ 26260472 (-)
G121981 NA non-coding upstream 222331 26363548 ~ 26365314 (-)
LOC117597626 NA non-coding upstream 347346 26488563 ~ 26489859 (-)
G122203 NA non-coding upstream 372728 26513945 ~ 26514230 (-)
LOC117597736 NA non-coding upstream 628133 26769350 ~ 26771692 (-)
G121585 NA other downstream 515709 25618612 ~ 25619310 (-)
mapk8ip1a LOC108268451 other downstream 1516904 24585356 ~ 24618115 (-)
cacna2d4b cacna2d4,LOC108268693,LOC107574657 other downstream 2018085 24079841 ~ 24116934 (-)
LOC117597766 NA other downstream 2323127 23811702 ~ 23811892 (-)
LOC117597751 NA other downstream 2324521 23808602 ~ 23810498 (-)
lrrc29 LOC108268915 other upstream 1085742 27226959 ~ 27237260 (-)
cep290 cep290 other upstream 1406129 27547346 ~ 27591334 (-)
G123154 NA other upstream 2067896 28209113 ~ 28212830 (-)
LOC113546677 NA other upstream 2187043 28328260 ~ 28329458 (-)
LOC117597737 NA other upstream 2227812 28369029 ~ 28378004 (-)

Expression


Co-expression Network