G121724 (LOC108269023)


Basic Information

Item Value
gene id G121724
gene name LOC108269023
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 25938437 ~ 25942918 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU143625
aaaaaaactgacagagagattgagagagagaccTACACATGACCTTGGCAAGTCCTGGGTGTTGAGTATATCAAAATTCCACAGCAAAAGTTATAAAGTGTCTAAAATTAATACTGCACGCTACTTTCTACAGCTGAGTTACTGTGCCTCTACATGGATTACAGAGGATTAAAAAGGTCACAACATAGCTATTTTCAGgctaaaattaacatttttttacacatgtCGTGGAATGGTTGTTCTTACCTGTGCTTTCTGTTCAGCAGTATCATTCTGAACCTTCCAAGTGTTATTATATGAGTTTTCCTTTGCACATGTAAccacaaaataagaaaaaaaaaaccattttgtCAGCTGTGAATCTTTGAGACGCTATGACGAAACTGCTTTGTAGTGACAGGAGAAAATCGATCCCTCCTCGGCAGATGGTTGCTGTCCAAATCGATTGGTCATTGATTGTGGGTGACCCACCTTGATAGTGCTCAATAGAGAAGGCTTGATGTGGTGGCACTCACCTCGGATTAGAGGCAGGGATGGGACAAGTGACTGTGGGGGGGGGGGACTTGATTGAAATGCAAATCCTGCCTGATGTCCTTGACCAAGAAGAGCATAGTGCTGCGCTTGCCATTCTACTGAAACTACATCATGACTGTGGAAACTCTGTTGTACTGGGAAtggaactgaaataaaaatcaacTTGACTGAAAGCCACTGATTTCAGATTGGTCCATATTTGGCAGGATAAGACTATTCTCAGACTGTCCCAAATGGTGCACTGGTGGTCTTTTGGTCCTCATTTGGAGCATGTGTGCCCTCTGGGAGAAAACTGCATTATTGCTAATGCAACAGTTTCCCATAAcctttatgtttatattaactATGGCCAATCATGGTGTACAGGTTTGTTCAGAGTCAGAAAATACTGACGAAGACAAAGATATACAAATGGGTATTAAAGTGTCATGAATCATGAATATAACTTGCCAGTGGCCAACATTTCTAATTTTGGGGGTCAAAGGGTGCTCCTAAGTGGCTATATGTTCCCTAAATGCATCATTTGGTGAAACCTAAATCAATAATGACTTAACAGTGGTCTATTACCCAAAACCCTGTGGGGTATTGGTTGGGACCAAGCATGGTGGATAAGTTTTTTGAGAAGACAGAGCAACCTTCACCAACACTGATGAAGTCAAAGAAATAGTAATGGGTCTTACAGTGTTTCGTATCAGCAGTTTAACTTGTCAGTGGCCAACAGTTCTTATTTTGGGGGTCAAATGGTGCTCCTAAATGCGCCCTATGGTGAAACCTATATTAATACTGACTTAACAGTGGTCTATTACCCAAAACCTTGTGGGGGTATTGGTTGGGACCAATGCTGGCTGAAGTGTTTGTCTAGAGCAAAGAGCAACGTACATCAACGCCGATGAAGACGAAGATACAAAAATGGGTCTTAAAGTGTCTCATCATCAGTTTTACTTGTCATTTCTCATTTCGGGGGTTAAAGGGTGCTCCTAAGCGGCTATATGTGCCCTGAATGGGCCATTTAGGGTGAAGACTATATCAATGCTTTGTGGTATTGGTTCGGACGAATCATGGCACATGAGTATTTTGAGAGCACAGAGCAACATACACCAACACTGATGAAGACAAAGATATTCAAATGGGTGTCTTATCATTAATTTCATTGACATTTCTTATTTTGATGGTCCATTTGGTGCTCCTGAGTGGCTATATGAGCCCTAAACGCACCATTTGGCCAAGACTATATCAATACTGATGTAACAGCAGTCTATTATACCCAAATATACAACaaatatacaacaaaaaaaaatctctaattAAATATCTGATTTCATTCATCATGTCTTTTGAAATGGAGATACTGTGTACATCAGATATAATTGCAATTTCTGTTTTGGTGAAGGAACGGAATGAAATGCTGCACCCCCAAGGATTTGAGGATTAACGCACAACTGATCCACAATTTCTTGATCGATGACATTAAACAGCCTTGGAGGTGGAACACAAAGCTTAGTGCACCATTTGGGACGAGGCTTAACccctttattcattttaaagcatattatgcGTAGTCCAAATGAGTGtttggatgagtgtgtgtatatggcgCCCTGCCAAGGACTAGAATCCCATCTgaggtgaattctcccaccttgagCCTAGTTTTCTcaagataggctctggatccactgtgaccctgaccaggataaagcatttactgaagataaatgaatgactgaatgaattcatagtagttatattttataccacagcactgttaaattctctactctgattgggcagaaggctgcaaggcaaatcacaggtttaaatgaATGTACTCGCTATAATAGATTATCATCTCTACAGTAGCAGcgaattcacagggacttgtatcatgtatacaccaccacatcaagaattaaacactgtttttaaaaaagaatctgtttatgtgaagttttctatgaggagatttttatttagcgtgtttggaaggagtctccggtgtcagtgctttttaacagtacgttttctgccacaggaaagtcttcaggatggaggactttcTCAGTAAtctgacaagctgtgtttttttgtcttatttacttagagagagaaaaaaagaagctggtgaaagaatgactgtttatagctgttataacataagtgacaacaggaactaacttgtttggcAACATTAaccgtaactataaacggagtacaaaaaaaggtaaaaaaaaagttgttggcaggttgctgtggtataagaggaataaaacactttggagttgttgctgttatagtaaaataatcaacttcagggtggtaacagtaactctgcttcatgtcgttgattattttcctataacagcacaccccaagtaTTTTGTTCCTTCCTTGTATTTAACAAAttactactatgaattatttagtacAGTTTAAATAATAGGACAGGCGTGAAGTTACAAGAGCAAGGACTTCAAGTCTGGACCCATCGAAGTGTCCTGGGAGTTTAGAGGGTTAAATCACACAATATTTAGGCTAGACCTAATCAGGATTAAGATGAGAATTTAGCCCTTTCAGCACTGCAATGCTGTCTGCGTAAATGGGCAAATGGTGATTTACTGTGTGAAAAGCACACTTTAATATCAACTGTACAGTAAATGTAAACTGAGACGGGGTTCGGAAGTagtgtaataaaaacaaaacaaaaccaaaaccaaaatgaCTGATAATATTCAGTAAAGAAAGCCAAGCTCTGTTTTTTAGTGTATGACTGTGAAGTTGATTGGTTAAATAGTATAGACACCATCTAACCAGTCCAGAAAGACCTCACACTCCATgcctctgtttgtgtgtgtttgtgtttgtactCGTGTCTGTGTATAAGAAATGTAGAGTTCTTTAGCAGGGCTGCTCATTGCACATGCGGTTCTCTCTGATGGGCCTGCATTTGCCTTTGCCTTTCTTCCTCACAGGCCTCACACGCTCCTGGACACCCCCGCCGCACTGCTTGGTACAGTCCGTCCAGCTGGACCACGGGCCTAATTTGCAAACCTGGTATCTCCTCATTTATCCTGACAGACTCCCGTCCTGCTTTATCTCTCCGCCTCTCTGTGGCGTCTTGCTTGGCTTTCTTGCGCTCGCTGGCCCGTGGGCCCCGTGTGCACTTCCTGATCTTACATTTCTTCCTCTGCACGGTTTCAGGACACGGGATACCGCCGAACTCCGGCTCTAACTTCACCATGCGAGTGCGGATCATGTGACCCTTCCCACAGGACTTGTTACACTCGGACCACTCGGTCCACTCAGACAGCATACAGTCCA

Function

NR:

description
PREDICTED: spondin-1-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU143625 True 3852 lncRNA 0.41 3 25938437 25942918

Neighbor

gene id symbol gene type direction distance location
LOC113546502 ccdc73 coding downstream 333314 25582366 ~ 25605123 (-)
trnam-cau_26 NA coding downstream 334236 25604129 ~ 25604201 (-)
trnam-cau_25 NA coding downstream 334907 25603458 ~ 25603530 (-)
trnam-cau_24 NA coding downstream 335522 25602843 ~ 25602915 (-)
trnam-cau_23 NA coding downstream 336137 25602228 ~ 25602300 (-)
LOC113546550 LOC108269377,LOC107572419,LOC107745926,LOC106573223 coding upstream 192101 26135019 ~ 26141217 (-)
LOC113546507 ovch1 coding upstream 203985 26146903 ~ 26157160 (-)
dkk3b LOC108269371 coding upstream 251914 26194832 ~ 26205600 (-)
si:ch211-266k8.4 NA coding upstream 445945 26388863 ~ 26448995 (-)
LOC113546506 LOC108268458 coding upstream 506661 26449579 ~ 26453245 (-)
G121572 tcp11l1 non-coding downstream 255960 25620461 ~ 25682477 (-)
G121586 NA non-coding downstream 311624 25624927 ~ 25626813 (-)
G121584 NA non-coding downstream 320112 25617733 ~ 25618325 (-)
G121583 tcp11l1,LOC107572299 non-coding downstream 321179 25616283 ~ 25617258 (-)
G121582 NA non-coding downstream 322550 25615121 ~ 25615887 (-)
G121761 NA non-coding upstream 73953 26016871 ~ 26017092 (-)
G121816 LOC108268991 non-coding upstream 156629 26099547 ~ 26106174 (-)
G121873 NA non-coding upstream 228634 26171552 ~ 26260472 (-)
G121981 NA non-coding upstream 420630 26363548 ~ 26365314 (-)
LOC117597626 NA non-coding upstream 545645 26488563 ~ 26489859 (-)
G121585 NA other downstream 319127 25618612 ~ 25619310 (-)
mapk8ip1a LOC108268451 other downstream 1320322 24585356 ~ 24618115 (-)
cacna2d4b cacna2d4,LOC108268693,LOC107574657 other downstream 1821503 24079841 ~ 24116934 (-)
LOC117597766 NA other downstream 2126545 23811702 ~ 23811892 (-)
LOC117597751 NA other downstream 2127939 23808602 ~ 23810498 (-)
lrrc29 LOC108268915 other upstream 1284041 27226959 ~ 27237260 (-)
cep290 cep290 other upstream 1604428 27547346 ~ 27591334 (-)
G123154 NA other upstream 2266195 28209113 ~ 28212830 (-)
LOC113546677 NA other upstream 2385342 28328260 ~ 28329458 (-)
LOC117597737 NA other upstream 2426111 28369029 ~ 28378004 (-)

Expression


Co-expression Network