G121582


Basic Information

Item Value
gene id G121582
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 25615121 ~ 25615887 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU143478
gagatgtttaacatttagagAAGGAGTCACCAGTCTCAAAGCATTATTACACTCAGTGGTAAAAATTTTCCAACATgaggaagtcttcaggacaaaggagtttgtgctttgcggtttctcattaacatgaaaagctgGGAATTTATATTGATAGCTGGTATAtcgtaagtaataacaggaactcatttattttgtggatattccacaacattaaagtaTCCGACGTGTGGTTCTTTAATAGATTAATAGTGAGACTTACTGACACTTACCAAGCTGCCTCTATAGTTTTGATGGTCTTACCTCTTTAATTTCCCCAACCAGTTTGATAGCATTGTCATAGACAGGTGGGTCGTCATTCAGCTGGGCTTCAAGACAATCCCAGAATGCTTTGTGCACAATTTCCTTAACTCGTTTCTCTAAACTGAAGGTAAAATcaaaacgagaaaaaaaaaaagaagatgataTTTTCTCTTCTAGTTTTGTGATTGGGTAATTTGGTAATGATTGGGTTTGTGATGGACTTTACCTTCCCTCAGCAGGCTCAGTGGGTTTGATTTGGAAGCCACCGTTCACTACGATCTCATGAGCCAACGCCATGTTAGTCACACCTTTAGCCGTCTCCATCAGCTCCTCCACGGACACGAACTTGGACGGGCTGGCTGTTAACACAATCAGAATATACAGACCTCTGTGGTAAAATCAAAATCTTTTGTATGCCCAATACAGCGTGTACAAGGAATATCTCTATGTGCAGTTATCATTAAGCa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU143478 True 767 lncRNA 0.39 1 25615121 25615887

Neighbor

gene id symbol gene type direction distance location
LOC113546502 ccdc73 coding downstream 9998 25582366 ~ 25605123 (-)
trnam-cau_26 NA coding downstream 10920 25604129 ~ 25604201 (-)
trnam-cau_25 NA coding downstream 11591 25603458 ~ 25603530 (-)
trnam-cau_24 NA coding downstream 12206 25602843 ~ 25602915 (-)
trnam-cau_23 NA coding downstream 12821 25602228 ~ 25602300 (-)
LOC113546550 LOC108269377,LOC107572419,LOC107745926,LOC106573223 coding upstream 519132 26135019 ~ 26141217 (-)
LOC113546507 ovch1 coding upstream 531016 26146903 ~ 26157160 (-)
dkk3b LOC108269371 coding upstream 578945 26194832 ~ 26205600 (-)
si:ch211-266k8.4 NA coding upstream 772976 26388863 ~ 26448995 (-)
LOC113546506 LOC108268458 coding upstream 833692 26449579 ~ 26453245 (-)
G121581 NA non-coding downstream 561 25613973 ~ 25614560 (-)
G121566 NA non-coding downstream 58692 25556039 ~ 25556429 (-)
G121482 NA non-coding downstream 231884 25382958 ~ 25383237 (-)
G121425 NA non-coding downstream 379614 25232714 ~ 25235507 (-)
G121174 NA non-coding downstream 688872 24926040 ~ 24926249 (-)
G121583 tcp11l1,LOC107572299 non-coding upstream 396 25616283 ~ 25617258 (-)
G121584 NA non-coding upstream 1846 25617733 ~ 25618325 (-)
G121572 tcp11l1 non-coding upstream 4574 25620461 ~ 25682477 (-)
G121586 NA non-coding upstream 9040 25624927 ~ 25626813 (-)
G121724 LOC108269023 non-coding upstream 322550 25938437 ~ 25942918 (-)
mapk8ip1a LOC108268451 other downstream 997006 24585356 ~ 24618115 (-)
cacna2d4b cacna2d4,LOC108268693,LOC107574657 other downstream 1498187 24079841 ~ 24116934 (-)
LOC117597766 NA other downstream 1803229 23811702 ~ 23811892 (-)
LOC117597751 NA other downstream 1804623 23808602 ~ 23810498 (-)
LOC113528756 LOC108268501,LOC103028890,LOC108416834,LOC107574299,LOC101068009,LOC107716653,LOC107753697,LOC107661481 other downstream 2047133 23563831 ~ 23567988 (-)
G121585 NA other upstream 2725 25618612 ~ 25619310 (-)
lrrc29 LOC108268915 other upstream 1611072 27226959 ~ 27237260 (-)
cep290 cep290 other upstream 1931459 27547346 ~ 27591334 (-)
G123154 NA other upstream 2593226 28209113 ~ 28212830 (-)
LOC113546677 NA other upstream 2712373 28328260 ~ 28329458 (-)

Expression


Co-expression Network