G121425


Basic Information

Item Value
gene id G121425
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 25232714 ~ 25235507 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU143282
ctgtattagagtgtgtgtgctctatcagtGCGAGTGCtgtatcagagtgtgtgtgtgctctatcagtgcgagtgctgtattagagtgtgtgtgctctatcagtgcgagtgctgtattagagtgtgtgtgctctatcagtGCGAGTGCtgtatcagagtgtgtgtgctctatcagtgcgagtgctgtattagagtgtgtgtgctgtatcaGAGTGTGTGATATATTAGAGTGTGTGCTGCTGCAGGTTGCATAACTCAGTGAAGAACAGCGGAGATGTCAGCAGGTCCTCACCTAACCAGTCGTTAAATTTCTTCACCTCAGACGGGAGGCCGAGTTCAGTGAAGTCACCCGTGTGGAGCAGCACGTCGCCGTACGGCATCTGGATGCCATCTGTCCTCGAGTGTGTGTCGGAGACGCACACGAAACGGGTGTGACCTGCTGGTTTAGGGGCATCATACGGAATGGGTTCCACCCTGCAACAGAACCAGAGAGTGGATCTCACTGcctaatc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU143282 True 511 lncRNA 0.51 3 25232714 25235507

Neighbor

gene id symbol gene type direction distance location
nav2b LOC108268924 coding downstream 35952 25072336 ~ 25196762 (-)
exoc3l1 LOC108269298,LOC108413953 coding downstream 209760 25008231 ~ 25022954 (-)
prmt7 prmt7,LOC108413952,LOC102778684,LOC108411915,LOC107573013,LOC107577788,LOC104944886,LOC107683005 coding downstream 229128 24991666 ~ 25003586 (-)
coq9 coq9,LOC107382780,LOC107589199,LOC107707431 coding downstream 250375 24976356 ~ 24982339 (-)
polr2c polr2c,LOC107667812 coding downstream 257223 24970447 ~ 24975491 (-)
pax6a pax6,pax6a,pax-6,LOC107572247,LOC107589163,LOC107674982,LOC107707493 coding upstream 223316 25458823 ~ 25474070 (-)
wt1a wt1,wt1a,LOC108413264,LOC105030317 coding upstream 311582 25547089 ~ 25568303 (-)
LOC113546502 ccdc73 coding upstream 346859 25582366 ~ 25605123 (-)
trnam-cau_20 NA coding upstream 362934 25598441 ~ 25598513 (-)
trnam-cau_21 NA coding upstream 363774 25599281 ~ 25599353 (-)
G121174 NA non-coding downstream 306465 24926040 ~ 24926249 (-)
G121172 NA non-coding downstream 307877 24924622 ~ 24924837 (-)
G121169 NA non-coding downstream 309719 24922772 ~ 24922995 (-)
G121161 NA non-coding downstream 318217 24914286 ~ 24914497 (-)
G121149 LOC108268998 non-coding downstream 343141 24889289 ~ 24889573 (-)
G121482 NA non-coding upstream 147451 25382958 ~ 25383237 (-)
G121566 NA non-coding upstream 320532 25556039 ~ 25556429 (-)
G121581 NA non-coding upstream 378466 25613973 ~ 25614560 (-)
G121582 NA non-coding upstream 379614 25615121 ~ 25615887 (-)
G121583 tcp11l1,LOC107572299 non-coding upstream 380776 25616283 ~ 25617258 (-)
mapk8ip1a LOC108268451 other downstream 614599 24585356 ~ 24618115 (-)
cacna2d4b cacna2d4,LOC108268693,LOC107574657 other downstream 1115780 24079841 ~ 24116934 (-)
LOC117597766 NA other downstream 1420822 23811702 ~ 23811892 (-)
LOC117597751 NA other downstream 1422216 23808602 ~ 23810498 (-)
LOC113528756 LOC108268501,LOC103028890,LOC108416834,LOC107574299,LOC101068009,LOC107716653,LOC107753697,LOC107661481 other downstream 1664726 23563831 ~ 23567988 (-)
G121585 NA other upstream 383105 25618612 ~ 25619310 (-)
lrrc29 LOC108268915 other upstream 1991452 27226959 ~ 27237260 (-)
cep290 cep290 other upstream 2311839 27547346 ~ 27591334 (-)
G123154 NA other upstream 2973606 28209113 ~ 28212830 (-)
LOC113546677 NA other upstream 3092753 28328260 ~ 28329458 (-)

Expression


Co-expression Network