RNA id: TU143456


Basic Information

Item Value
RNA id TU143456
length 2259
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G121572
representative False

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 25620461 ~ 25682477 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTGCagcaatatatattttaattcaaagtGAATTTTGACAATACACCataatttctttaatttgaCACTCACCAAATAGTCACCAGGAAAACCCGCTTTTTGTGACAAAGTACATAAGGCTTGGTCACATAGAAATCACTGAGAACCAGAGAAATAACGACTGAAAACTGTAAGAGACattacacacttaaaaaaaaaaaaaagttcccagTCCTCATATACTGAATATTGCACAGTGCAATGGCTACATGGCAAACTAATGTAGcgtaaaaataaatcagaagcAAAAACGTATTAGAAAGCCACAGAAACCTACATGTATTAAAACAGTAACAGTTCAGATTTAGTAAATCAAGTCCACTTACTCTGATGTCTAAATCTATTCTCTGATAACTTGCAGTGAGATTTAACTTCTACTAAAATATAATCTGCAGGAAAAAAGAAGGTTAATAGCTCTAAAGCGATCAAACCCAAACATTAGGACAGAAACTGGTATACAGTAGCACATGTGACAAATACCAAGACCCTGAATTTCAGTACACACGTCtctaaaaggaaaaacaacaaacacttcAACCAATCGAGAGAGAACACGCAGTAAAGTAAAAACAAGCCAAATACAATTGTTTGGTATGATGGGAGTACTTTATCAGTTTGAACGTGATTAGTAAAAGttttcggtgtgtgtgtgtgtgtgtgtgggggtttaGTAAAACAGCCCAGATGGATGGTTTTAGCAAATTCTTCGCATTTATGGGAATTTTACAGAGCTGCTGAGGTGATGTGGTGgttattttgtaataaagatAATATTTTGAGGCCACAAATTATTACTGAGGTGATGAGATAACTAAATCATGGTCATGAATTGTGCAACTTGAGCCCACGACTTAACACATAACCTCCAGTTGCTTACTTGTCAGGAACGGGTGAAACATATTTTAGAGAATTTGCACAAAGTGACACAACACCAGAGACTCCAGTATGTGTTTACGCCTCATTCCAAGGTTGAAGCGTAATATTATCAATCATCTACATTCTTAGGTTCCTGTAACCATAACGGTCTAAATGAATTGATTTCTCTGTCTCagtcattttaatatataatagcTGCTATGGGTTAAGCACTTTGTGTCCATGAAATAGATCTCGAAAAGCTTAACTCAAGCCCTCAACTTATTATCTCATGGCCTCCATATAATAATTCATGGCCACATGTCATTTCAGTGGCTCTTTTAAACACAGATGACTTCTGAAAAGCCACGACAGCTATGCCGTGTTCTAATGCGGTCATGTGTTCAGTGTATTTCAGCAGATTTCCAAACCCTATTCATTACAAAGTCAAAATCAACTGATAGCTCAGAATTTCAAGGTTGAGCTTCCTCAACATGGTGGAATCCACGGTCATTTGGTTTTGCGGTCGATGCGTAATTACATCGTAAATGTAATGTTGATATTCTTGATGATTTTTGTCATCTCCGCTGTCGCTATGCCTTTACACTGTCCTCATCGGCTACGTCCTAGCTAGCTAAGCCGTTATCCTCAGTCAGTAGTTAGCTTTACTCAGCATCTATGTTTcccagttgcttagcaacagcGTTTTCACAACTTGGACCGCGTAAAACTAATTCACAAGCCTGTCCGAACGCACTATATTACAACAGACGTCAGTCAGTGACTTGTTTAATAACAGAAACTGATTTATTATGAGCTCCTAATgccatttaaacattaaaaacccTACCCACCCTCCACACCTTCAACTGGCACAGAACAAAAGCAAGAATGAAAAATAagtttttggttgttgttttttttttttttaataccaattCTTTAAGCTCAACTGACTGATCCCTGATAATATAACGGCAGGATAGGAGGCTCtaaatgtttaatcagtgaTATAAACCCTTTGCTAGTGTTGACAGCAGGTGAGCTTTGGGGAGATAATCAGCAAATCCATTAACCCAGTTGTTTCTAGGACCCTACGGTAGGGTGCCTGGTTCATTCTAGTCGTCAGTTTTGTTTGACGCTGCCTAAGTGGCTGCGCTTCCCCCGGCCTGAACGACGTCTTGTAGGAGTTTCCGGTAGAACGGCGAGTAGACGAGCTTGTTGAAGTTCACGAGGTGGCTGAGTCTGATCCCGACATCCTCCAGCTCTTTGCTGATGGGAACCAGACCTCCGGGGACAGCCGGCGGGCTCCTGTGAGGACCCGGTTCCAAGAAGCCCAGGAGGTAGGTCTGGATCCGAGAATCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU143480 lncRNA downstream 2136 25617733 ~ 25618325 (-) True G121584
TU143479 lncRNA downstream 3203 25616283 ~ 25617258 (-) True G121583
TU143478 lncRNA downstream 4574 25615121 ~ 25615887 (-) True G121582
TU143477 lncRNA downstream 5901 25613973 ~ 25614560 (-) True G121581
TU143474 lncRNA downstream 5901 25614197 ~ 25614560 (-) False G121581
TU143625 lncRNA upstream 255960 25938437 ~ 25942918 (-) True G121724
TU143663 lncRNA upstream 334394 26016871 ~ 26017092 (-) True G121761
TU143754 lncRNA upstream 417070 26099547 ~ 26106174 (-) True G121816
TU143830 lncRNA upstream 489075 26171552 ~ 26192553 (-) False G121873
TU143828 lncRNA upstream 494162 26176639 ~ 26192553 (-) False G121873
XM_034305651.1 mRNA downstream 15338 25582366 ~ 25605123 (-) True LOC113546502
XM_026946433.2 mRNA downstream 52158 25547089 ~ 25568303 (-) False wt1a
XM_026946484.2 mRNA upstream 452542 26135019 ~ 26141217 (-) True LOC113546550
XM_026946415.2 mRNA upstream 464426 26146903 ~ 26157160 (-) True LOC113546507
XM_026946386.2 mRNA upstream 512355 26194832 ~ 26205600 (-) True dkk3b
XM_034305676.1 mRNA upstream 706386 26388863 ~ 26448995 (-) True si:ch211-266k8.4
XM_026946414.2 mRNA upstream 767102 26449579 ~ 26453245 (-) False LOC113546506
TU143481 other downstream 1151 25618612 ~ 25619310 (-) True G121585
trnam-cau_26 other downstream 16260 25604129 ~ 25604201 (-) True trnam-cau_26
trnam-cau_25 other downstream 16931 25603458 ~ 25603530 (-) True trnam-cau_25
trnam-cau_24 other downstream 17546 25602843 ~ 25602915 (-) True trnam-cau_24
trnam-cau_23 other downstream 18161 25602228 ~ 25602300 (-) True trnam-cau_23
TU144796 other upstream 1552247 27234724 ~ 27237161 (-) False lrrc29
trnag-gcc_7 other upstream 1635209 27317686 ~ 27317756 (-) True trnag-gcc_7
TU144927 other upstream 1872637 27555114 ~ 27560654 (-) False cep290
XR_004578467.1 other upstream 2460910 28143387 ~ 28144093 (-) True LOC117597720
TU145318 other upstream 2526636 28209113 ~ 28212830 (-) True G123154

Expression Profile