RNA id: XM_034305676.1


Basic Information

Item Value
RNA id XM_034305676.1
length 2691
RNA type mRNA
GC content 0.48
exon number 16
gene id si:ch211-266k8.4
representative True

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 26388863 ~ 26448995 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGttgaggaggagcagcagcagtgctAAAGCCTCAGCCAGGCGCAGGAGCAGCAGCACTGTGCGCTTTGATGAGTTTGGTTTCGCCTTCAgtaagaggagagagaggaaactgCAGCACAGATCCCATgattacagCTATCCTCAGCCGAATGCGGTTAAAGTTAAAGAGCTGTGTGAACTGCTCAGCTATTGGAATGGATCCAGTTTCATTTGCAGAAATCAGATTGAACGCTTTATCCGTATTGGCATTCCTCCTACGCTGCGTGGCCGTGTGTGGAAGTGTCTGCTGGACATCGAGGCTGTTCAAGTGGCCAGTGATTTCAACTACCAGGTGGAGCTCAGTCACTGCTTTACTTTCTTGGAAATTTGGGAAGCAGAGAAAgtgtgtctgagtgagatCCGGAAGCCTCTGGTGGACCTCAGTGTGAGCGAGTACAGCATCATTTCAGCCATCAGCACGCTGGGCGAGAGAGAGAACGAGCTGGGCTCAGCTACTGTAGGCTCACTCAGCGTCGAAGTGGCTCTCTTCAGACAGATCGCTCTGGACCTGCagAGGTCTTTTCCAACACACCGCTCTCTAATGGGCGACACTCCTGAAGCCATCGAGGGTCAGGCCAAGCTTTTCCGAGTGCTCACTGCGTACGCCAAATATAACCCTCAGATTGGGTACAGCCAAGCGAGGAGGAAGCTTTCTGGGCTTTGGTGGTGCTGCTTGAAAAACCTAAATACCTGTCTGAGCTGTTTGACTCCTCACTCAAGCAgatcCAACATCAAGCAGCTGGTGTTTCAGCAGCTACTAAAGCACAGGAAGCCTCAAGTATTCCAGCACCTGGAGAAACTGGGCGTGTCCTCAGTGCATTTCATCATGCAGTGGTTTCTGACTCTCTTCACCTCTCTCCCATGCTGGGACTCAGTGCTGGCAATCTGGGATCTCTTTCTGCTGCACGgcatggtggtggtgtttcGTGCTGGTTTAACCGTCCTCCAGCTGCTGGAGTCTCGTCTCATGAGTATGACGGAGGAGGCGGCTGTGCTGCCTGTTCTGCTGCGTGTTCCTGTAGACGTctCTCAGTACCACATCCTGATTCCAGCTTTATGGAGCACAGAGGTGCAGGAGTGGGAGATCAAGTGCATGAACAGGCTCATACTGGAGGATACTGATGAGGGTCATGATACAGAGGAAACCAGCAAGAACAGTCCCGTGTCTCTCAGCTGTGAAGAACAGAAAGAGCAGAGAGCTgatgaggagaggaaagaacCTTCTGGAAAAGAGGCTGTAGGCTCAGGAGGGAGGAATGTGTTTGCACGCATGCTGAAAGCGGCGCAGCGCTACCTGGCAGACACGACCAAgGCCATGGCCTCTCCTGGGGAAAGCAGCTCAGCAGCAGCTCGCCTGCCGAAGAAGAGAGCGTCTACTTCCTTCAGCCTGACACGGAGAAGGAAGAGCCAAAGCCGGCAATCCCAGAATGCATCTGTGGCCAGAAAGGGACCATTTATCCTCCAGGATGCTGATGGAGGTGCAACagaggacagTGCATCGTTGCCCCTCCGGAGGCTGCGTTCGGGTCCCGTGGGTCGAGTGGCACGCAGACGCAGCAGTGTCCAGTCCACCCGGGTCAGATCTGTCATACATCGGACTCACAGAGGTACGGCCCAGTGTCTCACCAGCCCCATCCCAAACTCCTCCCGCTCTAAACCAGGCCGAGACGAGGCTAGCGTGGAGCGTCAGGAATCCCCACACAGGATCCCGTCTCCAGGACGCACTCCACTGACCGAGATCGTCATCGGTTCCAGTCCAAGCATCCAGATACGGGAGTCTCAGCTGATCTGAGGGACACAGAGGAGTTTAGTCATCTCTGAGTGAGCACTACACAGAGCGCTAAACCGGATGATGCTGGATTTTAAAACCTTGATCCAGATCTTAGTCTTAATAACCATCCAAACTGTCGGTACAGCTCATCGTTTATACACATGATCATGGCCGTGGAGTGAGAAATCATCACAGCACTGAGAAAactaaatgtaacatttaacaCAGTTATAggatattatacagtatactgtatatttattaattataaccTCATAATTATAAACACTACATAATAGTACACACTCAAAAACTAAGTTTTAATCTGAGCAGTTGATGCAGTAGCGTCTGTAATTCTTATGCCACTTGTTGGAAGTTAATGTTTTATGATGATCTTTGGAGTTACTTGAGATAATAAAAGATGAATGAGCCACTTTATGGCCTCTCATTATTAATTGATGCTAATGTCTTGGCTTTGGGTTGCCTCTGCAGTCATGTCTGTAGTGAGGGATTCCATGATTACGGTGTCATTCAGCCACTGTAACTCTTCAAAACTGCACTTTGTAAATATTGAAtctaaaaaaacatgcagttaaaCATTGAAAAAGTGTCTTAATCCATCTCCAGCAACATCATCTCaacatttttataaagtttCTCTGCTGGcaggctgcattttgctcttaaatgtgTAACAGGTGTTGAGTTTTTTTAGCATAAGATTAGCAAACACAAATTGTTGTTAACTAGCTTCCATGCTTATGACACAAGGACATTActgacattctaatgatttacttaaaattattattttgaattaataatttactttcagtctataatttgtGTAAgtgttgtactttcaaagttgTACTTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU143948 lncRNA downstream 23549 26363548 ~ 26365314 (-) True G121981
TU143827 lncRNA downstream 128391 26189073 ~ 26260472 (-) False G121873
TU143830 lncRNA downstream 196310 26171552 ~ 26192553 (-) False G121873
TU143828 lncRNA downstream 196310 26176639 ~ 26192553 (-) False G121873
TU143826 lncRNA downstream 196310 26179696 ~ 26192553 (-) True G121873
XR_004578391.1 lncRNA upstream 39568 26488563 ~ 26489859 (-) True LOC117597626
TU144210 lncRNA upstream 64950 26513945 ~ 26514230 (-) True G122203
XR_004578484.1 lncRNA upstream 320355 26769350 ~ 26771397 (-) True LOC117597736
TU144283 lncRNA upstream 321066 26770061 ~ 26771692 (-) False LOC117597736
TU144314 lncRNA upstream 407419 26856414 ~ 26859301 (-) True G122284
XM_026946386.2 mRNA downstream 183263 26194832 ~ 26205600 (-) True dkk3b
XM_026946415.2 mRNA downstream 231703 26146903 ~ 26157160 (-) True LOC113546507
XM_026946484.2 mRNA downstream 247646 26135019 ~ 26141217 (-) True LOC113546550
XM_034305651.1 mRNA downstream 783740 25582366 ~ 25605123 (-) True LOC113546502
XM_026946430.2 mRNA downstream 820561 25547089 ~ 25568302 (-) False wt1a
XM_026946414.2 mRNA upstream 584 26449579 ~ 26453245 (-) False LOC113546506
XM_034305620.1 mRNA upstream 584 26449579 ~ 26453245 (-) True LOC113546506
XM_026946398.2 mRNA upstream 4360 26453355 ~ 26470026 (-) True smc1b
XM_034305618.1 mRNA upstream 4360 26453355 ~ 26469413 (-) False smc1b
XM_026946399.2 mRNA upstream 29489 26478484 ~ 26487081 (-) True cpa4
TU143481 other downstream 769553 25618612 ~ 25619310 (-) True G121585
trnam-cau_26 other downstream 784662 25604129 ~ 25604201 (-) True trnam-cau_26
trnam-cau_25 other downstream 785333 25603458 ~ 25603530 (-) True trnam-cau_25
trnam-cau_24 other downstream 785948 25602843 ~ 25602915 (-) True trnam-cau_24
trnam-cau_23 other downstream 786563 25602228 ~ 25602300 (-) True trnam-cau_23
TU144796 other upstream 785729 27234724 ~ 27237161 (-) False lrrc29
trnag-gcc_7 other upstream 868691 27317686 ~ 27317756 (-) True trnag-gcc_7
TU144927 other upstream 1106119 27555114 ~ 27560654 (-) False cep290
XR_004578467.1 other upstream 1694392 28143387 ~ 28144093 (-) True LOC117597720
TU145318 other upstream 1760118 28209113 ~ 28212830 (-) True G123154

Expression Profile