AMCG00007071


Basic Information

Item Value
gene id AMCG00007071
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 2597078 ~ 2629005 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007071
ATGGCGGCCCCCTGTAGGAGCATGAGCGGCGCCGGGACAGACCCAGACTTCAGCGCCACACGCAGTACAACTAGTTTTCACAAGAAATCCCGCAGCAAATTCGTCTCTATCCCTGGAACAAGACCCTCCGTGCAGAACGGACAGCTTATTGTTTCCACCGGGGTGACGTCTCTTGATTATGTGATAGaggAAGATAAATATGACAGCTATTCCCGCATGTTGCTGaagtatttcttagcagaaggCGTTGTCTGTGGGCATTCCCTCTTCATAGCTTCTGCCAGAGACCATCCAGATGAGATTTTACAGgaactccCCGCTCCATTGCTGGATGACATTGCTAACCCCAAACCGGAAGAAGGACAAAcccaaggcattgatccagaagGTCCAAACTCCATGAAAATAGCCTGGCGCTACCAGAACCTTCCCAAAGTACAGACTGCACTGGCGTCGTCTTCAAGGTTTGGCCACTATTATGACGTCTCCAAACCAATGGATCCTGCGATGAGAGAGACTGCAAAGTGCAATACCTTTTTCCTTCCTAATGAACTGCCTTTTCAGTCATCAACAGAAACGAGtcGTGTGAACATTGGCTACACCAAACTGCTGAGATCCATCCAGGGAGTCATTCGCAGGGAAGGATTTGACGGAGCCAGTCTCCAGAACAAGCCAAGAAGCATTCTCAGAATAGGAGTCCATTCTCTTGGATCGGCTCTATGGGGGGATGACATCTGTTGTGAGGAGAACCCACACTATCTCTACAGTCTTACAACGTTCCTGTACGGTCTGCGTGCTCTCCTCCGagcttccctgtctgtctgtctggtgaCAGTGCCTTCACACCTCATCCAGAACAAAGCAATTATGGGACGTGTAACGAAGCTGTGCGATACGGTGATCGGTCTTGAATCATTCAGAGGCTCTGAGAGGGAAACCAACCCCCTGTACAAGGACTATCACGGTTTGCTACATGTGAAACAGATACCTCATCTCAACTGCTTAATGTGTGAAGTTCCTGACACAAAGGAccttgcttttaaattaaagagaaaGCAATTCGCCATTGAG

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0045859 regulation of protein kinase activity biological_process
GO:0008023 transcription elongation factor complex cellular_component
GO:0033588 elongator holoenzyme complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008607 phosphorylase kinase regulator activity molecular_function

KEGG:

id description
K11375 ELP4; elongator complex protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007071 True 1071 mRNA 0.49 8 2597078 2629005

Neighbor

gene id symbol gene type direction distance location
AMCG00007070 rcn1,LOC102786392 coding downstream 121737 2462154 ~ 2475341 (-)
AMCG00007067 eif3m,LOC107758039,LOC107671036 coding downstream 215055 2376136 ~ 2382023 (-)
AMCG00007066 NA coding downstream 233278 2350038 ~ 2363800 (-)
AMCG00007065 NA coding downstream 250377 2326612 ~ 2346701 (-)
AMCG00007063 NA coding downstream 286879 2302383 ~ 2310199 (-)
AMCG00007078 NA coding upstream 253363 2882368 ~ 2888415 (-)
AMCG00007081 csrp3,LOC107662347 coding upstream 275788 2904793 ~ 2908208 (-)
AMCG00007080 NA coding upstream 283424 2912429 ~ 2917189 (-)
AMCG00007085 LOC105018079 coding upstream 499774 3128779 ~ 3131839 (-)
AMCG00007094 lrp4,LOC106587054 coding upstream 874844 3503849 ~ 3538983 (-)
G20965 NA non-coding downstream 48789 2548004 ~ 2548289 (-)
G20947 NA non-coding downstream 169657 2427159 ~ 2427421 (-)
G20908 NA non-coding downstream 288960 2200053 ~ 2308118 (-)
G20914 NA non-coding downstream 308460 2286824 ~ 2288618 (-)
G20870 NA non-coding downstream 424595 2171904 ~ 2172483 (-)
G20976 NA non-coding upstream 92 2629097 ~ 2637796 (-)
G21020 NA non-coding upstream 273557 2902562 ~ 2903620 (-)
G21034 NA non-coding upstream 293655 2922660 ~ 2923027 (-)
G21036 NA non-coding upstream 377393 3006398 ~ 3010255 (-)
G21082 NA non-coding upstream 779149 3408154 ~ 3408708 (-)
AMCG00007059 NA other downstream 400223 2142675 ~ 2196855 (-)
G20630 NA other downstream 1644016 952236 ~ 953062 (-)
G20609 NA other downstream 1679249 845929 ~ 917829 (-)
AMCG00007001 NA other downstream 2182952 408839 ~ 414126 (-)
AMCG00006997 NA other downstream 2234784 356618 ~ 362294 (-)
AMCG00007072 NA other upstream 15900 2644905 ~ 2663649 (-)
AMCG00007091 ckap5,LOC108269026 other upstream 847063 3476068 ~ 3500670 (-)
G21426 NA other upstream 2412654 5041659 ~ 5049520 (-)
G21429 NA other upstream 2427782 5056787 ~ 5057406 (-)
G21632 psmc3,prs6a,LOC107758446 other upstream 3187804 5816809 ~ 5820284 (-)

Expression


Co-expression Network