RNA id: AMCG00007071


Basic Information

Item Value
RNA id AMCG00007071
length 1071
RNA type mRNA
GC content 0.49
exon number 8
gene id AMCG00007071
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 2597078 ~ 2629005 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCGGCCCCCTGTAGGAGCATGAGCGGCGCCGGGACAGACCCAGACTTCAGCGCCACACGCAGTACAACTAGTTTTCACAAGAAATCCCGCAGCAAATTCGTCTCTATCCCTGGAACAAGACCCTCCGTGCAGAACGGACAGCTTATTGTTTCCACCGGGGTGACGTCTCTTGATTATGTGATAGaggAAGATAAATATGACAGCTATTCCCGCATGTTGCTGaagtatttcttagcagaaggCGTTGTCTGTGGGCATTCCCTCTTCATAGCTTCTGCCAGAGACCATCCAGATGAGATTTTACAGgaactccCCGCTCCATTGCTGGATGACATTGCTAACCCCAAACCGGAAGAAGGACAAAcccaaggcattgatccagaagGTCCAAACTCCATGAAAATAGCCTGGCGCTACCAGAACCTTCCCAAAGTACAGACTGCACTGGCGTCGTCTTCAAGGTTTGGCCACTATTATGACGTCTCCAAACCAATGGATCCTGCGATGAGAGAGACTGCAAAGTGCAATACCTTTTTCCTTCCTAATGAACTGCCTTTTCAGTCATCAACAGAAACGAGtcGTGTGAACATTGGCTACACCAAACTGCTGAGATCCATCCAGGGAGTCATTCGCAGGGAAGGATTTGACGGAGCCAGTCTCCAGAACAAGCCAAGAAGCATTCTCAGAATAGGAGTCCATTCTCTTGGATCGGCTCTATGGGGGGATGACATCTGTTGTGAGGAGAACCCACACTATCTCTACAGTCTTACAACGTTCCTGTACGGTCTGCGTGCTCTCCTCCGagcttccctgtctgtctgtctggtgaCAGTGCCTTCACACCTCATCCAGAACAAAGCAATTATGGGACGTGTAACGAAGCTGTGCGATACGGTGATCGGTCTTGAATCATTCAGAGGCTCTGAGAGGGAAACCAACCCCCTGTACAAGGACTATCACGGTTTGCTACATGTGAAACAGATACCTCATCTCAACTGCTTAATGTGTGAAGTTCCTGACACAAAGGAccttgcttttaaattaaagagaaaGCAATTCGCCATTGAG

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0045859 regulation of protein kinase activity biological_process
GO:0008023 transcription elongation factor complex cellular_component
GO:0033588 elongator holoenzyme complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008607 phosphorylase kinase regulator activity molecular_function

KEGG:

id description
K11375 ELP4; elongator complex protein 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU26186 lncRNA downstream 48789 2548004 ~ 2548289 (-) True G20965
TU26162 lncRNA downstream 169657 2427159 ~ 2427421 (-) True G20947
TU26117 lncRNA downstream 288960 2200200 ~ 2308118 (-) False G20908
TU26123 lncRNA downstream 308460 2286824 ~ 2288618 (-) True G20914
TU26116 lncRNA downstream 342518 2200053 ~ 2254560 (-) True G20908
TU26198 lncRNA upstream 92 2629097 ~ 2637796 (-) True G20976
TU26204 lncRNA upstream 15900 2644905 ~ 2663649 (-) True AMCG00007072
TU26258 lncRNA upstream 273557 2902562 ~ 2903620 (-) True G21020
TU26285 lncRNA upstream 293655 2922660 ~ 2923027 (-) True G21034
TU26287 lncRNA upstream 377393 3006398 ~ 3010255 (-) True G21036
AMCG00007070 mRNA downstream 121737 2462154 ~ 2475341 (-) True AMCG00007070
AMCG00007067 mRNA downstream 215055 2376136 ~ 2382023 (-) True AMCG00007067
AMCG00007066 mRNA downstream 233278 2350038 ~ 2363800 (-) True AMCG00007066
AMCG00007065 mRNA downstream 250377 2326612 ~ 2346701 (-) True AMCG00007065
AMCG00007063 mRNA downstream 286879 2302383 ~ 2310199 (-) True AMCG00007063
AMCG00007072 mRNA upstream 15950 2644955 ~ 2663371 (-) False AMCG00007072
AMCG00007078 mRNA upstream 253363 2882368 ~ 2888415 (-) True AMCG00007078
AMCG00007081 mRNA upstream 275788 2904793 ~ 2908208 (-) True AMCG00007081
AMCG00007080 mRNA upstream 283424 2912429 ~ 2917189 (-) True AMCG00007080
AMCG00007085 mRNA upstream 499774 3128779 ~ 3131839 (-) True AMCG00007085
TU26061 other downstream 426508 2167310 ~ 2170570 (-) False AMCG00007059
TU26054 other downstream 451263 2144716 ~ 2145815 (-) False AMCG00007059
TU25725 other downstream 1644016 952236 ~ 953062 (-) True G20630
TU25699 other downstream 1748789 845929 ~ 848289 (-) False G20609
TU26783 other upstream 2412654 5041659 ~ 5048839 (-) True G21426
TU26778 other upstream 2413515 5042520 ~ 5049520 (-) False G21426
TU26789 other upstream 2427782 5056787 ~ 5057406 (-) True G21429
TU27087 other upstream 3187804 5816809 ~ 5820284 (-) True G21632
TU27173 other upstream 3378635 6007640 ~ 6014169 (-) False AMCG00007173

Expression Profile