RNA id: TU26204


Basic Information

Item Value
RNA id TU26204
length 929
lncRNA type sense_over
GC content 0.36
exon number 4
gene id AMCG00007072
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 2644905 ~ 2663649 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GACAACATGCTTCTGCTTCAAactaaaccattttaaattaatttctttcatgtttcatgtacatcctttttttctgtctaTAGAtaactgcaatgaaaatgtgcaGTGCGTTTACTGAAAGCGGTGTAATATTCGTCTTATTTTGATATGCATTTAgaatagaaaatgtgtaaatggaaGTGGAAACCATGTTATTCTctaattcaaataaacagttattGGTGTGTAatgatatttatatagtttGGAATGTAGCTTTGGCTAACATGACAGTTTCCCGGGGAAGTTAAAAAGCGGTGCAGACATGTTCATGCGTTCAGGCTGGAGCGGCTTGTGGAAACGGATGGATGACTTCCTGCGCTTTACAGACTGAACCTGCCAAATCAAGGGTTATACAAACTAAACACTCAGAAGATGGTAAAAGTGAATTGTGAATCCTGCACAATATGATGGATGAAAATATCTGTCAAAAAGACTGGTATGCCATTCTTGATGCCAATCCCTCAGAAAACTTTCAAGAACTGAAACAGAAGTACCAGAAACTGGCACTTTTGCCACTGAACTGCAGCAGAGATGGCCAGTTGATGCTCAAGTTTTTCTTGAAGATATGAACTGGGTGGATGGTGAGCAGGCCTATATGTATGAATGCCGCTGTGGAGGAGAATATATACTTTCTAAAGAAGATGCAGAAGAACATGTGTCCATTATCTGCTGTGATACCTGTTCCCTTAGTATAGAAGTCAATAAATGTAGCTTCTAagttcatgtaaaatgttttcaatcacTGTAAGATTGAATgctttaataaaagcaaaacatttatttttaattgtgatgtGATTATCTTGTAAACAATATTACAGTtgaggcagagattagaaaacACAcccagttaaaacaaaaatgtatttaataaaaattaataagCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU26198 lncRNA downstream 7109 2629097 ~ 2637796 (-) True G20976
TU26186 lncRNA downstream 96616 2548004 ~ 2548289 (-) True G20965
TU26162 lncRNA downstream 217484 2427159 ~ 2427421 (-) True G20947
TU26117 lncRNA downstream 336787 2200200 ~ 2308118 (-) False G20908
TU26123 lncRNA downstream 356287 2286824 ~ 2288618 (-) True G20914
TU26258 lncRNA upstream 238913 2902562 ~ 2903620 (-) True G21020
TU26285 lncRNA upstream 259011 2922660 ~ 2923027 (-) True G21034
TU26287 lncRNA upstream 342749 3006398 ~ 3010255 (-) True G21036
TU26340 lncRNA upstream 744505 3408154 ~ 3408708 (-) True G21082
TU26358 lncRNA upstream 812428 3476077 ~ 3476799 (-) False AMCG00007091
AMCG00007071 mRNA downstream 15900 2597078 ~ 2629005 (-) True AMCG00007071
AMCG00007070 mRNA downstream 169564 2462154 ~ 2475341 (-) True AMCG00007070
AMCG00007067 mRNA downstream 262882 2376136 ~ 2382023 (-) True AMCG00007067
AMCG00007066 mRNA downstream 281105 2350038 ~ 2363800 (-) True AMCG00007066
AMCG00007065 mRNA downstream 298204 2326612 ~ 2346701 (-) True AMCG00007065
AMCG00007078 mRNA upstream 218719 2882368 ~ 2888415 (-) True AMCG00007078
AMCG00007081 mRNA upstream 241144 2904793 ~ 2908208 (-) True AMCG00007081
AMCG00007080 mRNA upstream 248780 2912429 ~ 2917189 (-) True AMCG00007080
AMCG00007085 mRNA upstream 465130 3128779 ~ 3131839 (-) True AMCG00007085
AMCG00007091 mRNA upstream 812419 3476068 ~ 3500670 (-) True AMCG00007091
TU26061 other downstream 474335 2167310 ~ 2170570 (-) False AMCG00007059
TU26054 other downstream 499090 2144716 ~ 2145815 (-) False AMCG00007059
TU25725 other downstream 1691843 952236 ~ 953062 (-) True G20630
TU25699 other downstream 1796616 845929 ~ 848289 (-) False G20609
TU26783 other upstream 2378010 5041659 ~ 5048839 (-) True G21426
TU26778 other upstream 2378871 5042520 ~ 5049520 (-) False G21426
TU26789 other upstream 2393138 5056787 ~ 5057406 (-) True G21429
TU27087 other upstream 3153160 5816809 ~ 5820284 (-) True G21632
TU27173 other upstream 3343991 6007640 ~ 6014169 (-) False AMCG00007173

Expression Profile