AMCG00007078


Basic Information

Item Value
gene id AMCG00007078
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 2882368 ~ 2888415 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007078
GCGGTGTGCTGTTCCTGCAGGGTGGGGTGGGCAGCGGCAGCCCATGTTTGTTCATGTTCAACCTGCACTTGTGCTGATCACGTTGCTCACTGTTTGTTTAAACAGATGGAGTAGTAATCATTGATCATTTGTGCAATTCAGCATCTTAACACCATATGACACGATAAACCATGCGCTTTACAAATGTTACACTATACGTAAGTCATTGCATAACTTTTATGTGATTATATTATCAACACTTTGTTACTCTAGTAACAAATAAAAGGCGCACGACTAATGCAATACATAGCGCTGCTGTGTGCGCCGCTGGTGGCGCTGAGCTGAGGACGGTGTCTGACAGGGACGTGTCTTCCGCAGGCGAGCTGTGTCGTCGTGCAACCTTTTATACAGACGCCTGCAAGTGCAATCGTGAATCTGAACTTAGACAGCCGAGGTGTGGAGATAACAAGGCACAGCGGCAACTGAGTGTAAAAGTGTCTAAGGAGCATCATGGCCACTGTTAGAGACAGACTTCTCCAGGAAGTCAACCCTGGAAAGGCTGTTGAAGCCAGCGCAAAGGTCACCATTGTCGGAGTCGGGCAAGTGGGCATGGCCTGTGCCACAAGCATTCTGCAATCAaATGTAGCAGATTGTGTTGTATTGATCGATGTGATGAAGGACAAGCTGAAGGGGGAAGTTATGGATCTGCAGCACGGAAGCCTGTTTCTGAAGACCGCCAGGATTGTGGCAGCTAAAGATTATTCCGAAACCGCGAATTCGAAGCTGTGCATCATAACCGCCGGTGTCCGTCAGAAGGAGGGGGAGAGCCGACTGGCTCTGGTGCAGAGAAACGTCGATGTCTTCAAGCATATCATCCCAGATCTGGCCAAGTACAGTCCGGATGCAATTATTCTGGTGGTTTCAAATCCAGTCGACATCCTGACCTACGTGGCCTGGAAGCTGAGTGGATTCCCGAGTCACCGTGTCATCGGGAGCGGCACGAACCTGGACTCGGCCCGTTTCCGCTTCCTCATGGGCGAGAAGCTGCGCATAAACCCCAGCAGCGTCCACGGGTATATAGTGGGTGAACACGGAGACTCCAGTGTCCCTGTCTGGAGCGGAGCCAACGTCGCTGGAGTCAGCCTGCAGTCCGTTAATCCTGAGCTGGAGACTGATGAGGACACGGAAGGGTGGAAGGGGATACACAAACAAGTGGTAGACAGTGCGTACGAGGTGATCAGGCTGAAGGGATACACCTCCTGGGCCATCGGGCTCAGTGTGGCCAATCTGGCACATTCGATCCTGAAGAACCTCAGAACAGTCAACCCCATCTCAACGCTCGTCAAGGACATCCACGGGATCAAGGAGGATGTGTTCCTGAGCCTGCCGTGCATCCTGGGCTCCAGTGGGGTGTGTGGGGTGATGAAGCAGCCCCTAAAGGCGACCGAGACCAAGCTGCTCCAGCACAGCGCAGACACCCTCTGGAACGTCCAGAAGGATCTCAAACTCTGAGCCACAGCAAAGACGTCCGGTGTGGCAACACAAGACCAAAGCCTAAATCTCctaaatttgtattaaatgtgcaagtgctttaacacatttatttttgtctttgacAGTTGTTAGTTCTCTATATCTCACAATTGCATAAGCTGTGGCAGTTACTGTATTGGATGTAATCCAGGATGTGGTAAAGGGTTGTTTCGGCTACTGTTAACCCATTTTTGGGAACTTTATATCGCAACGCTGGCATATATTCCACAAGAAGTTTCTTCAAGGAAATAAAGTGTCCTAGAAGCGATGGTTTGGCAAAGACCACGTTGCAATTGTTCTGCTGCCTATCAGatttcagtgtgctgtgtgtaatGAGCTTTGGGCATTCATTTGAATCACTGTGATTAATTGCtcaagtaaatattaaatgtctttTACTGCTTTCTCCTGAATTGtctttgtattcattgtttACACTGAGTATTACCATGAATGGTAGGTTTTAAGTTTGTATGTAAGCATTTATAATAGAATAAAAACCGAAATATTCAACCTCCTTACAATTCCTCATATATACTCGCAAACAACCCGGTATTGTTTGCATTCCTTTTCAGACCTAAATGACTCCACACATGGCCTACACAATGCGatggttttagtttgtttttgttcttatttctttaAGAAACCCCTCCTCAAATCATATGATTGAACCAACACTTTGCAACATGTAAACAATcatgtctccctctctcagtaaAGAC

Function

GO:

id name namespace
GO:0006096 glycolytic process biological_process
GO:0044262 cellular carbohydrate metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005737 cytoplasm cellular_component
GO:0004459 L-lactate dehydrogenase activity molecular_function

KEGG:

id description
K00016 LDH, ldh; L-lactate dehydrogenase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007078 True 2237 mRNA 0.47 8 2882368 2888415

Neighbor

gene id symbol gene type direction distance location
AMCG00007071 NA coding downstream 253363 2597078 ~ 2629005 (-)
AMCG00007070 rcn1,LOC102786392 coding downstream 407027 2462154 ~ 2475341 (-)
AMCG00007067 eif3m,LOC107758039,LOC107671036 coding downstream 500345 2376136 ~ 2382023 (-)
AMCG00007066 NA coding downstream 518568 2350038 ~ 2363800 (-)
AMCG00007065 NA coding downstream 535667 2326612 ~ 2346701 (-)
AMCG00007081 csrp3,LOC107662347 coding upstream 16378 2904793 ~ 2908208 (-)
AMCG00007080 NA coding upstream 24014 2912429 ~ 2917189 (-)
AMCG00007085 LOC105018079 coding upstream 240364 3128779 ~ 3131839 (-)
AMCG00007094 lrp4,LOC106587054 coding upstream 615434 3503849 ~ 3538983 (-)
AMCG00007093 NA coding upstream 766955 3655370 ~ 3680401 (-)
G20976 NA non-coding downstream 244572 2629097 ~ 2637796 (-)
G20965 NA non-coding downstream 334079 2548004 ~ 2548289 (-)
G20947 NA non-coding downstream 454947 2427159 ~ 2427421 (-)
G20908 NA non-coding downstream 574250 2200053 ~ 2308118 (-)
G20914 NA non-coding downstream 593750 2286824 ~ 2288618 (-)
G21020 NA non-coding upstream 14147 2902562 ~ 2903620 (-)
G21034 NA non-coding upstream 34245 2922660 ~ 2923027 (-)
G21036 NA non-coding upstream 117983 3006398 ~ 3010255 (-)
G21082 NA non-coding upstream 519739 3408154 ~ 3408708 (-)
G21122 NA non-coding upstream 613468 3501883 ~ 3502845 (-)
AMCG00007072 NA other downstream 218719 2644905 ~ 2663649 (-)
AMCG00007059 NA other downstream 685513 2142675 ~ 2196855 (-)
G20630 NA other downstream 1929306 952236 ~ 953062 (-)
G20609 NA other downstream 1964539 845929 ~ 917829 (-)
AMCG00007001 NA other downstream 2468242 408839 ~ 414126 (-)
AMCG00007091 ckap5,LOC108269026 other upstream 587653 3476068 ~ 3500670 (-)
G21426 NA other upstream 2153244 5041659 ~ 5049520 (-)
G21429 NA other upstream 2168372 5056787 ~ 5057406 (-)
G21632 psmc3,prs6a,LOC107758446 other upstream 2928394 5816809 ~ 5820284 (-)
AMCG00007173 madd other upstream 3119225 6007640 ~ 6054064 (-)

Expression


Co-expression Network