AMCG00007173 (madd)


Basic Information

Item Value
gene id AMCG00007173
gene name madd
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 6007640 ~ 6054064 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007173
CATCATTAAAGCGACACGCCCTATCCCATGTTCTTGTTTTGCAGAACCAGATCCTGACTGcttttcccccccccaccccacgaAAGTGATGGTTCCCAAGAGTCTGCTGCAGTCCTAAGATTTCTCCCTGAGGATTTGACACTCCCGCCCAGGCTGCGATGACTTAAAGAAGAAGGCTGATTcgatagaagaagaaaaaatggaGAAAAGGAAACCATGCCCTCGCTTACTGGACTACCTGGTGGTGGTCGGAGCCAGACAGCCGAGCAGCGACAGCGTGGCCCAGACCCCGGAGCTGCTGCGCCGCTACCCCCTGGAGGACCAGACAGACTTCCCGCTGCCGCCGGACGTGGTGTTCTTCTGCCAGCCGGAGGGGTGCCTGAGTGTGCGGCAGAAGCGCATGAGCCTGCGGGACGACACCTCCTTCGTGTTCACGCTCACCGACAAGGACACGGGCGTGGTGCGCTACGGCATCTGCGTCAACTTCTACCGCTCCTTCCAGAAGCGCATCGGCAAGTCGGACAAGGGCGAGGGGCACCGCGGCGGCCGGGATAAAGCTAAGGCGGCGGCCGCGGCGGCGGGGGCCCCTCCGCTGGGGGGCGTGGCAGGAGACAGGCCGGCCCAGGACGAGGGCGGCAGTGAGGGCTCCGAGAGCGGCTCCACCCTGCAGCTGCCCAGCGCCGACTCCACCCCTGATGTGAACAAGTCCCCGCGGGCCAAGCGCTGTGCCAAGCTGGCCCAGAGGCACCGCAACAGCACACTCACCTCGCTGTGCATCCTCAGCCACTACCCCTTCTTCTCCACCTTCCGTGAGTGTCTCTACATCCTCAAGAGGCTGGTGGACTGCTGCAGCGAGAGGCTCTCCAACAAGCCCGGCATGCCCAAGGGCATTCAGAGGGACACGATGTGGCGTGTGTTCACCGGCGCCCTCTCGGTGGAGGAGAAGAACAGCGCGCTGCTGCAGGACCTGCGTGAGATCGAGTCCTGGGTGTACCGGCTGCTGCGCTCGCCGGTGCCCGTGGCGGGGCAGAAGCGTGTGGACGTGGAGGTGCTGCCCCACGAGCTGCAGCCCGCGCTGACCTTCGCCCTGCCCGACCCGTCCCGCTTCTCGCTGGTCGACTTCCCGCTGCACCTGCCCCTCGAGCTGCTGGGGGTGGACGCCTGCCTGCAGGTCCTCACCTGTATCCTGCTGGAGCACAAGGTGGTGCTTCAGTCCCGCGACTACAACGCCCTGTCCATGAGTGTCATGGCCTTCGTGGCCATGATATACCCCCTGGAGTACATGTTCCCCGTCATCCCCCTGCTGCCCACCTGCATGGCCTCCGCGGAGCAGCTCCTCCTGGCCCCCACCCCGTACATCATCGGCGTCCCGGCCAGCTTCTTCCTCTACAAGTCCGACTTCCGGATGCCAGACGACGTGTGGCTGGTGGACCTGGACTGTAACAAGGTGATTGTGCCCAACAATGCCGAAAGCCTGCCCGTCCTGTCGGAGCCCGAGTCGACGGAGCTGAAGAAACACCTGAAGCAGGTCCTTCAGTGTCTGGTTAGCATGACTGCGATCACACAAAGACAGCTCTTCTCCTCCAACAACAAGGCCCTGGCCAGCATGAGTCTGAACACGCAGCCCATCCTGAACCTGGAGAAGTTCCACGAAGGGCAGGAGATGCCACTGCTGACGGTGCGCGGCCGCGACGACAACGCCTCGACGCCCTCCACCGAGTTCAACCCCCTGATCTACGGCAACGACGTGGACTCTGTGGATGTGGCCACGAGGGTTGCAATGGTGAGGTTCTTCAACTCGCCCAACGTGCTGCAGGGTTTCCAGATGCACACGCGGACCCTGCGCCTCTTCCCTCGGCCCGTGGTTGCCTTCCAGGCCACGTCCTTCCTGGCATCCCGGCCCAAGCAGTCAGGCTTTGCCGAGAAGCTGTCCCGGACCCAGGCCGTGGAGTACTTTGGGGAGTGGTCCCTCAACCCCACCAACCTGGCCTTCCAGAGGATCCACAACAATGTGTACGACCCGTCCCTGATCGGGGACAAGCCTAAGTGGTATGCCCATCAGCTGCAGCCCATCCACTACCGAGTGTACGATGGCAACTCCCAGCTGGCCGAGGCCATGAGTGGGCCAGTCAAGCTGGACAACGAGGACAACGACAACGACTCTGACCCCACCGACGACAGCGGCAGCGACAGTGTGGACTATGACGACTCCAGCTCCTCCTACTCGTCGCTCGGGGACTTCGTCAGCGAGATGATCAAGTGTGACATCAAGGGGGACACACCCAGTGTGGACCCCCCGACACACGCGGCCCTGGGGGACCCCAGCGAGGTGGAGTTCCAGGAGTTCCAGGAGTACCGGGGCGAGGGCGAGGACCCGGCGCTGGACAGCGAGGCGTCCCTGGAGAACCACCAGCCGCGCTCAAGCTCCAGCACCACGGCCAGCTCCAGCCCCAGCACCATCATCCAGGGGGTCAACCAGgagccctGCGAATCGGCGGACGTAGAGGACCGCGCCGCCCCCGGACCTCAGCCCTCGCTCCCAGTGCTGGGGGTCCCGGCCTTCGCCAAGCTGGGCCTCGAGCGGCGGGAGGGCGAGCCGGTGCCCACCGCAGACGGCACGCCGAAGAAACGCGACTACGACAACCCCTACTTCGAGCCGCAGTACGGCTTCCCCACTGAGGAGGAGGGCGACGGGGACGAGGTGGAGGAGAGCTACACCCCCAACTTCCCCCAGAGCGTCAACGGCAGCAATGGCAGCGGGCAGGATCAGTCCGGCTCTGAGATCAGGAGCAGTGAGCGCTCGGCCTTTTGCCCCCGGCTCGGCCCCGACGCCCCCCAGGGTGACTTCCTGCCCCCCGCTGACCCTACGCCGGGCCGCTCTCTCCGCAGGTCCCAGAAGCCCCTGAGGCCCAGCTCTCTGAAGCTGCCCAGCGACTCGGACGCGGAGTCGGACTCCCGGGCCAGCTCGCCCAACTCCACCATCTCCAACAACAGCAACGATGGCTTCGGGGGGCTCATGTCCTTTGCTAGTAATCTGTACAAGAACCACAGCACCAGCTTCAGCCTGTCCAACCTGGCCTTACCCACGAAGGCGGCCCGGGATAAGACAACCCCGTTCCCCAGCCTCAAAGGCAACAGGAGAGCGCTGGTGGACCAGAAGTCGTCCGTCATCAAGCACAGCCCAACGGTGAAGAAGGAGTCTCCGTCTCCGCAAGGCCGAGCAAACAACACGAGCGAGAACCAGCAGTTCCTGAAGGAGGTGGTGCAGAACGTTCTGGAGGGCCAGGGCGTGGGCTGGCTCAACATGAAGAAAGTGCGCCGCCTGCTGGAGAACGAACAGCTGCGCGTCTTCGTCCTGAGCAAGCTGAACCGGGCCATCCAGTCGGAGGAGGATGCCCGGCAGGAGGTCATCCACGACGTGgaGATCAGTCGCAAGGTGTACAAGGGGATGCTGGACCTGCTCAAATGCACCGTGTCCAGCCTGGAGCACTCGTACACCAACGCCGGGCTGGGGGGGATGGCCAGCGTCTTCAACTTGCTGGAGATCGCCCGCACCCACTACTACACCAAAGGGAAGGGGGTCCGCCAGTTTGACACACGGAGTCTCAACGAAGAGAACTTTATAGCCTCCATTGGGACTGAGGGGGGGAAGCCCTTCTTTGACCTGGGCGACACAGACGAGAAGAAATCTCAGATCAGCGCCGACAGCGGACTGAGTGTCACCTCGGGCTCACAGAAGAGCGACTCCGAGTCCATCGCCAGCTCCGAGCCGCCCGCCCTGACCCGGAGCACGAGCCAGGACTCCGAGGCCAGTACAGTGGTGAGCAACAGCTCGGGGGAGACCCTGGGGGCGGACAGCGACCTGAGCAGCAACGCGGGAGACGGACCGGCGGGGAGACTGGCCCCCCACCTCACCGTGTCCAGGGGCACGCTCTCCGACAGCGAGATCGAGACCAATCCTGCCACCAGCGCCGTCTTTGGGAAGACTCACATGTTGAAGCCCGGCCTGAAGCAGGGCAGGGGAAGCCTGCCGGGCAGAGGGCCGCCCCCCGTGGCCCCTGAGGACGTCAGCATGAGGGTGTACCTGTGCGAGGGCCTGCTGGgtaaGGAGCGCTCCACACTGTGGGACCAGGTGCAGTTTTGGGAAGATGCCTACCTGGATGCCGTGATGCTGGAGAGGGAGGGCATGGGCATGGACCAGGGACCGCAGGAAATGATCGACAGGTACTTGTCGCTGGGGGACCACGACCGCAAACGCCTGGAGGACGACGAAGACCGCCTGTTGGCCACCCTGCTACACAACATGATCGCCTACATGCTCATGATGAAGATGGCGAAGAACGATATCAAGAAGAAAGTGCGCCGTCTGATGGGAAAATCCCACATCGGCCTCGTCTACAGCCAGGAGATCAACGATGTTCTGGACAGGCTGGCTGACCTGAACGGACGAGAGCTGCCCATCAGGCCCAGTGGCAGCCGACACATAAAGAAGCAGACGTTCGTGGTGCATGCTGGGACAGACACCACGGGAGACATATTCTTCATGGAGgtGTGTGACGACTGCATCGTGCTGAGGAGCAACATCGGCACTGTGTACGAGCGCTGGTGGTACGAGAAGCTCATCAACATGACCTACTGCCCCAAGACCAAGGTGCTGTGTCTGTGGAGGCGCAATGGCCAAGAGACCCAGCTCAACAAATTCTACACCAAGAAGTGCAGGGAGCTGTATTACTGCGTGAAGGACAGCATGGAGCGAGCCGCCGCACGCCAGCAGAGCATAAAGCCCGGGCCCGAGCTGGGGGGCGAGTTCCCCGTGCAGGACATGAAGACGGGCGAGGGGGGGCTGCTGCAGGTCACGCTGGAGGGCATCAACCTGAAGTTCATGCACAGTCAGGTTTTCATAGAGCTGAATCACATAAAAAAGTGCAATACTGTCAAAGGAGTCTTTGTCCTGGAGGAATTTgTTCCTGAAACTAAAGAAGTGGTGATCCACAAGTACAAGACTCCGATGGCCCACCAGATCTGCTACTCCGTGCTGTGTCTCTTCTCCTACATGGCTGCGGTTCGAGGGAAGGAAGCCGAGAGCAAACCCAAAGCCCTGTCCCCGAGGCCGGTGCCCAGCTAGTCACGGCCCCTCGGCCCCGGGGGGGACCCTCACAACATACCGCTGTGCATGGCAGCGGGCTCCCCGTCCATCTCCCGTCCCGCCTACACGTCCTGCCCCGGTGCCCGTCCCTCGCTGGCTCGTGTTTTAGTGTACAGGAGAACAGTTCTGCTCTTTTgaagctatttatttaattttactccCCGTCGGCCCCTGTGTGGTCATTATTCGAGTTTGTTACGTATGTgtacgtgtctgtgtgtgtccgcCCTTCGCCATTCCCCCCTGGTTTTAACCTTCCCGCTATGCATTGGTTCTGTAAAGTGGGATTCCCGAATGTGTTGtacgtgtttgtttttaaccaaaATGAAAACGAAACATCTTGAACTGCAGCCTCCGCTCAGCAGCACGCCTCTTTCGGCATGTCGGTGTCCCGTTCGTTTTGTTTCGCCTCGTGCTCTTCCTGTCTTCTGCTCTCGACTGGAATTGCGACACTTGACAGCCGGCCGACTCCCGAACGCCACGGCTGCCGGCAGTGCGGCCGCCGGCAGTGCGGCAGCGACGACACTTTCTTGTACAGATCGTCTGTGTCACTGTGAATCCTGCAGCTCCTCCCTTACACTTCAGCTATacagtatgattattattacttacaTGTGCTTTATGATATTGTAAAGTCTGTTAAGTCTACCAtagtgaaacatttaaaaagcacaatgcGGGGAGTCGGCTCCAGGTACCGACGATGACACGACTGCCATCGTAGATACAGTTGACAGTTGATCTTAGAAATTAATAAAGGCATCGTTTTTTGtccattgtttgctttttaaatgtttcctggGGTTTCGATGTAGTGAGTGTTTAAGATGAATGCATTTTCTCTCGCTTTGCCTCCAGAGGCCTAACTACTGTACTGATGATGAAATTTGTGTCTGTGGTCGGCAGTATTGAAATGCAtgtacttcttcttcttcaaaagataataataataaaataaatgctgtacattttcttgGAGAAAGGAAACGCACTGTAtaattctgctgtttttttttattttttattattattattattattattatatgatggTTTGTCCACTAGTGGGTGGTAATCGGGTGGGATGCAGCCTGCCATGGGTTAAAGTAGAGAGAGGAAAgcgtaatatataaatacatataaatagatATTATTGTAATGAAAGACTGGGCAGCCACTGTTCAGACGACTGTTCCTATAAATGTGGACGCACTGTACTGAGAGACTCCTGCCTTCTAGGTCCTGctgtaatgtgtatattttaaaaggcgGAAAACAGTTTCTTTCTACgtcctgactttttttttttccagtgctgtgATACTGTTTCAGAGGTGTACAATGTCTGGGTGAACCATAGCAGTCacgttttctcttttttcttttgtgtctttctttcGTGAGGAAGGAAAAATACAGAATCATGTAATTAAAGTCAAGTACTTGCACATTGTAACTTCTTCCATTTGAATACTCCCCTAGACAGACCGTGTTGAGGCTGAAAATTAagtctaaatgtaaatattgtgtttaaaaacagatgGGATGGGGGGAGTAGATCTGTCGTACTGGGGAGGGAGGTGGTCGGCCCAGTGGACTGGATTAATTGGTACTGAAAACATACGTGGTTGTCTGATTCCAAGTATGCTgctctagagagagagagatatttaaaaaaaagacatctgatgtaaatatttcagtattaaaaagtatttatagaAATTGTACAGCTTTGGCAATATGAGAATAAAACACGTC
>TU27173
CAGTCGTTCCCCTGCTGGTGGACAGGTCAGGGTCCCCTGTGGCCCCTCAGGGGTGCGGGCAGCAGTGTAACTGCTAGACGGTTATTGACGCCAATCACCAGCCCTCATTGCTGGGGAGGACGCATGGAGGTGGCAGGTTGACCCGGGGAAGGGAGGGGGATAGACTGTTCAAATTGGGAAATATGAAAccgattgtttttcttttcttttcaaatccactTTATCTCTCACTTATTCGACTCTGCCGATTCTCCTTTATTTGGTGTTATTTGCGGACTCGGTCTCGCCTCGCCGTTGGCTGTGAAGCGCTGTTTTGACCCCGTGGGTGCACTTGCTCTCTGTTCAATATTAATCCAAACCATTTCTCTTCCATGCTCTCTCCCCCTGCAAGGAGCGGAAGGTTTTCATAGAGCTGAATCACATAAAAAAGTGCAATACTGTCAAAGGAGTCTTTGTCCTGGAGGAATTTgTTCCTGAAACTAAAGAAGTGGTGATCCACAAGTACAAGACTCCGATGGCCCACCAGATCTGCTACTCCGTGCTGTGTCTCTTCTCCTACATGGCTGCGGTTCGAGGGAAGGAAGCCGAGAGCAAACCCAAAGCCCTGTCCCCGAGGCCGGTGCCCAGCTAGTCACGGCCCCTCGGCCCCGGGGGGGACCCTCACAACATACCGCTGTGCATGGCAGCGGGCTCCCCGTCCATCTCCCGTCCCGCCTACACGTCCTGCCCCGGTGCCCGTCCCTCGCTGGCTCGTGTTTTAGTGTACAGGAGAACAGTTCTGCTCTTTTgaagctatttatttaattttactccCCGTCGGCCCCTGTGTGGTCATTATTCGAGTTTGTTACGTATGTgtacgtgtctgtgtgtgtccgcCCTTCGCCATTCCCCCCTGGTTTTAACCTTCCCGCTATGCATTGGTTCTGTAAAGTGGGATTCCCGAATGTGTTGtacgtgtttgtttttaaccaaaATGAAAACGAAACATCTTGAACTGCAGCCTCCGCTCAGCAGCACGCCTCTTTCGGCATGTCGGTGTCCCGTTCGTTTTGTTTCGCCTCGTGCTCTTCCTGTCTTCTGCTCTCGACTGGAATTGCGACACTTGACAGCCGGCCGACTCCCGAACGCCACGGCTGCCGGCAGTGCGGCCGCCGGCAGTGCGGCAGCGACGACACTTTCTTGTACAGATCGTCTGTGTCACTGTGAATCCTGCAGCTCCTCCCTTACACTTCAGCTATacagtatgattattattacttacaTGTGCTTTATGATATTGTAAAGTCTGTTAAGTCTACCAtagtgaaacatttaaaaagcacaatgcGGGGAGTCGGCTCCAGGTACCGACGATGACACGACTGCCATCGTAGATACAGTTGACAGTTGATCTTAGAAATTAATAAAGGCATCGTTTTTTGtccattgtttgctttttaaatgtttcctggGGTTTCGATGTAGTGAGTGTTTAAGATGAATGCATTTTCTCTCGCTTTGCCTCCAGAGGCCTAACTACTGTACTGATGATGAAATTTGTGTCTGTGGTCGGCAGTATTGAAATGCAtgtacttcttcttcttcaaaagataataataataaaataaatgctgtacattttcttgGAGAAAGGAAACGCACTGTAtaattctgctgtttttttttattttttattattattattattattattatatgatggTTTGTCCACTAGTGGGTGGTAATCGGGTGGGATGCAGCCTGCCATGGGTTAAAGTAGAGAGAGGAAAgcgtaatatataaatacatataaatagatATTATTGTAATGAAAGACTGGGCAGCCACTGTTCAGACGACTGTTCCTATAAATGTGGACGCACTGTACTGAGAGACTCCTGCCTTCTAGGTCCTGctgtaatgtgtatattttaaaaggcgGAAAACAGTTTCTTTCTACgtcctgactttttttttttccagtgctgtgATACTGTTTCAGAGGTGTACAATGTCTGGGTGAACCATAGCAGTCacgttttctcttttttcttttgtgtctttctttcGTGAGGAAGGAAAAATACAGAATCATGTAATTAAAGTCAAGTACTTGCACATTGTAACTTCTTCCATTTGAATACTCCCCTAGACAGACCGTGTTGAGGCTGAAAATTAagtctaaatgtaaatattgtgtttaaaaacagatgGGATGGGGGGAGTAGATCTGTCGTACTGGGGAGGGAGGTGGTCGGCCCAGTGGACTGGATTAATTGGTACTGAAAACATACGTGGTTGTCTGATTCCAAGTATGCTgctctagagagagagagatatttaaaaaaaagacatctgatgtaaatatttcagtattaaaaagtatttatagaAATTGTACAGCTTTGGCAATATGAGAATAAAACACGTCCAACCTGAGATCTGTGAAGTGTGTGGTCTGTCACAATTAtaactgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg

Function

symbol description
madd Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to be involved in regulation of Rab protein signal transduction and regulation of apoptotic process. Predicted to act upstream of or within apoptotic process. Predicted to be located in cytoplasm and membrane. Predicted to be active in synapse. Orthologous to human MADD (MAP kinase activating death domain).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007173 True 6907 mRNA 0.58 33 6007729 6054064
TU27173 False 2502 TUCP 0.46 4 6007640 6014169

Neighbor

gene id symbol gene type direction distance location
AMCG00007170 NA coding downstream 111055 5872776 ~ 5896585 (-)
AMCG00007168 LOC103364365,LOC108229046,LOC101064922 coding downstream 148373 5858851 ~ 5859267 (-)
AMCG00007167 LOC106587439,LOC106587479,LOC104919254 coding downstream 165773 5826625 ~ 5841867 (-)
AMCG00007163 NA coding downstream 254669 5734674 ~ 5752971 (-)
AMCG00007162 NA coding downstream 314335 5692142 ~ 5693305 (-)
AMCG00007172 nr1h3,LOC107553099,LOC107689968,LOC107664377 coding upstream 27471 6081535 ~ 6088041 (-)
AMCG00007176 NA coding upstream 67638 6121702 ~ 6122376 (-)
AMCG00007177 NA coding upstream 302946 6357010 ~ 6372398 (-)
AMCG00007185 bbox1,LOC106587091,LOC106561934,LOC107682871 coding upstream 601349 6655413 ~ 6660262 (-)
AMCG00007184 NA coding upstream 621602 6675666 ~ 6676981 (-)
G21646 NA non-coding downstream 19318 5915072 ~ 5988322 (-)
G21582 NA non-coding downstream 286098 5721263 ~ 5721542 (-)
G21550 NA non-coding downstream 445432 5559594 ~ 5562208 (-)
G21536 NA non-coding downstream 483963 5521615 ~ 5523677 (-)
G21537 prdm11,LOC106560765 non-coding downstream 488889 5517227 ~ 5518751 (-)
G21722 NA non-coding upstream 286715 6340779 ~ 6341171 (-)
G21739 NA non-coding upstream 465059 6519123 ~ 6519736 (-)
G21756 NA non-coding upstream 512153 6566217 ~ 6569739 (-)
G21786 NA non-coding upstream 581519 6635583 ~ 6638309 (-)
G21787 NA non-coding upstream 584933 6638997 ~ 6644878 (-)
G21632 psmc3,prs6a,LOC107758446 other downstream 187356 5816809 ~ 5820284 (-)
G21429 NA other downstream 950234 5056787 ~ 5057406 (-)
G21426 NA other downstream 958120 5041659 ~ 5049520 (-)
AMCG00007091 ckap5,LOC108269026 other downstream 2506970 3476068 ~ 3500670 (-)
AMCG00007072 NA other downstream 3343991 2644905 ~ 2663649 (-)
AMCG00007201 NA other upstream 1270360 7324424 ~ 7342341 (-)
G21942 NA other upstream 1445383 7499447 ~ 7506875 (-)
G22200 NA other upstream 2339132 8393196 ~ 8396224 (-)
AMCG00007267 NA other upstream 3403424 9457488 ~ 9463337 (-)
AMCG00007282 NA other upstream 3905998 9960062 ~ 10001165 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000026_07786816_07835100 MADD coding CI01000026 null 7785159 ~ 7835100 (-)