AMCG00007282


Basic Information

Item Value
gene id AMCG00007282
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 9960062 ~ 10001165 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007282
CCGTTTGTGGCAAAATACACACTGCTTCCTATTGTTTCAGCCAATGCTTTTGTAAGTCTTTTGTAGGGGGGGTAGTTGCTAGTATCATCTTACTTTCCCCCAGGGAAAGTCACATGACCCAGCAGTCTGTGCTGTTTCGGGGAAGGGAGGGAAATTATGTTGAGCCAGGTTTTTAAAGCTCTCAATGAGAACCACATGCAGGATAAGGGAGGCAGGGCAGTGACTAAGTCTGCCTGGGTAAAAAGAACAAGCGCTGAAAGAATCCCTCCTGACATTTTCACCAGGCTGCACAGGAGAGAGGATCTGAGAGGAAGCCCAGAGTGAaaggaagggagacagagagagagaacaaaaaaaaaattgcagatcCTTCCCGGAAACCTTACACCGCTCTTCAGGATTGTTCAATAAGAGAGGCTCCTTTATCTCTGCTGAAACAAGAGTTTACTTTTATTCTGgactttttaataaacacagataTTTCTGAAAAATTATAAAAGATCAGCAATAGCCATGTCAAGCAGCCTCGTCAGACGAAACTCCAACAAGCAAGGTTTACAGAACCTCCTCAGACTGACTGCTCAGCGGAGCATagaggatgaggaggagatAGCGAGGGAGCGTCGGCGGAGAGCACGAGAGGAGTTCCGCAGCCACTGTGGCTCCGGGGGCTCGACCACAGACAATGGGCAGCCATCTGAGGATAACCTCTATGATTACGAGTCCAAGACTAGCTGCCAGCCTGGGCTTGAGGAAGACGAGGGCTTCAGCGACTGGACTCAGAAGCTGGAGCAACGGCGACAGAAGCGTCTCGAGGAGCAAAGCCAGAGTGAGGAGGTGTGCAGCAGTGGAGCAGCCCACAGATCAGAGGTCACGGTGAAGAGCTGGAGAGCAGCAGAGGAGTTGAAGGataaggaggaggaggatgaccAGTGGGAGAGGAACGAGAAGGAAAGGAGAGATCGAGATGAAGCCCTGCAGCGAGAGGAGAGGGtacacagagaggagagagaagaaatggagagaCTGCAGAAGGAAGAACAAAGAAAGACTGCAGCCATCAGGAAAAGAGAAAATCTGGGAAGAGAAAGGGATGATGAGGTTAAAGACAAAAAGAATGAGGTGAAGGTCTACAAATCCAGGGTCTTCCTGCAGCAGGAAGTCAGGCACAGCAACAGCAATGGAGATGCAGCTGAAGAGGAAGTGACATCACATCTTGTAAAAACTAAAAGGATAACAAGgAGCCTCAGCCAGTCGCAGGAGGCAGAGGACGAGCAGGAGGTGTTCCTGGAGACGGAGCAGAAGCTGGAGAAGATACGCCGCAGCCACCAGGAGAAAGAGAGCCAGGAGTATGAGCAGCTGAAGCAGAAGCAGGCCGAGGCTGAggtggagctggaggagctgaagcGGCGCAGGGAGGAACGACGGAGGGTCCGGGAGGAAGAGGAGCGCCAGCGGGAGCAGGATGAGCATGAGAGGCAGCTCAAGGAGGAGGAGGAGAAGAGACACATGAGGGAGGAAATTGAGAAGAGGAGGATGGAAGCTGCAGAGAAGAGACTGAAACATCTCAGCACGTCCAGTGCTGAAGGAGACGAACCCTTCAGTCCTCTCAGCCCTAAAAGCCCCACTTTTAAGAATGAGAGTGAGGAGAGAGTGACAGCAGAAAATACATACTCGATTACAGAGAGAACAGAATCTTTGAATCGATCCTTAAAGAAAAGTAACAGCATTAAGAAGACACAGCCCCCCGTGCCAATCTCCAAGATTGATGACAAGCTGGAGCAGTACGCTCACGCCATTGAGATCTCTACCAAGGAAGCCAAAGCAGCAAAACAGACTCTGATGGATATCCCAAACCCCTCTGAGCCCATCTCCTCCAAGAAGTATTTATTTGAGGCTGGAGAAGGCTGGAGCCAATGTACACCAGTGCAGTCTGCAGACACAGAAAGCCTGAAGGTTGGAGTAGCTGATCTGATTACTCAGTGGGTGAAAGGCAACCCAGACGGTAGCAGCAAGAATTCTCCCTCCAAGCCAGCTGATATTAAAGCAGGTGATGTTTTACACAAAAAGAACTTGTGGGAAACCAAAACGGACACTTCTTCTGCTAAGTCAGCGTCGACAGTGAAAGGTACCCCTTCTGGTAAAAGGTACAAGTTTGTTGTGACCGGACATGGCAAGTACGAGAAGGTTGCAGTCAGCGACAGTGATCACAATGAATTCACAAATGGGAAAGCAAGTAAGTTTTTTCAGTGACTGTAGTGTa
>TU28210
AGGACACAGAAAGCCTGAAGGTTGGAGTAGCTGATCTGATTACTCAGTGGGTGAAAGGCAACCCAGACGGTAGCAGCAAGAATTCTCCCTCCAAGCCAGCTGATATTAAAGCAGGTGATGTTTTACACAAAAAGAACTTGTGGGAAACCAAAACGGACACTTCTTCTGCTAAGTCAGCGTCGACAGTGAAAGGTACCCCTTCTGGTAAAAGGTACAAGTTTGTTGTGACCGGACATGGCAAGTACGAGAAGGTTGCAGTCAGCGACAGTGATCACAATGAATTCACAAATGGGAAAGCAAcTGGATTGTGCCAGGAAGAGTTGTGAAAAATTGAAGACTGGTAATGCACCTTAAAAAATTGttgccttcttttttttttttttttttttttttttttttttttttttttttttatttatgcattttgttgatTCACAAGAGACTTCAAAGTGAAATGGCCCATTGATATTACTACCATATATCCTGACTGCAgcctaaaaatacattttaaactgtagcATTTCTAAGCAAGTACAATAAGAAGTGCTCTTGGAGATATAATTTTCAAAGTCAGTGCCCACATTTTAGCTAGGGGGTTGTTCAGTCTCATTTACAACCTGagaatacatttaagttttcaatAACAATATCATCCAAGATTCAGAAAAGAATTTCAGTTACTGAACGGtttctctttgtatttttttttgtactggaATTGTTAACAGAAACTTTTGTCCAAAATATCAATGTATATACGAGTAATGTTTTTACAgtccaaaaaatgtattaatgtaattattttacaaacctGTCCCTAAACAATGAAACTACActtaggtcttttttttttttttttttttaactacgtAAAGCTTTTATGTTCATGAAAAGATGcctaaaaaaatgaaagggggAGCAGTTTTCTAATAGACTCAACATAATTAATTCCCATATTGTATATGTTGTTGCATGTGCATCCCTTGAGGCATTGGTCCATATTTGCGTTTCTAAataattttgtgtatgtccCTTAAATGGATATGCTGCATTTAACCAAAAAAGTTTTAATTCCTACTGATATGCCCTTCCTAGTGTCAGTGCTTTGTGATCTAACATATTGCTGGATACAGTATTGAATACTATAAAATCTCTTAATCTAACCATTACATCCGAATTTTGATTCTTTATAAGTCCAAATCATAGAAAAAGGCTTTATCTGACAACTGTGCCAGTCAGAGCACTGAACATTAAAGTGATTTACTGATCCACCAATCAAAGCACTGTACTAGTGCATGTTTagacacaaaagaaaagttaaatttTACAGCTAGACGGTATATGGAACAAAATGTGGTAAGTTGGTAGAGgaatgccaataaagcactaaGATGGTTACCACCATCGTGTGTGACTTTCAAACACATTAACTATTATACTTAAATGATATCACTCTTAATGTCTGCTGCTACTAAGGGAATTTAGAAGTGTGAACTATGTCAGAACTATgtttaagaaaaactaaaaaatgattgttttgtttgtatgataTTCTAGCTTGAAGCCTCACACTGGAATTATGAGTATTAAGACACATTACTGGTCTTTCTTGAAAATTGAAAtaaggaaaaatgttttttttttaatacaacatcACAGCTGATTAACTGTAACAAGGACTTTCTGAAAGCTGTACTAATTGTTTCTTCATAATTTTGGGATCTTGGCAATGTCCTTCTATATGTTGGCAAACTATGAACTatcacataattattttaaataggctTAGCTgttacatgcattttaaaacaaatgtataggGACTGCTTTTTGTATTACCCTTGAAATGTACCActattattgtgatttttttttattttttaaataaaaaatggttaaGCTGTAT

Function

GO: NA

KEGG:

id description
K14957 LSP1; lymphocyte-specific protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007282 True 2263 mRNA 0.50 14 9971096 10001165
TU28210 False 1906 lncRNA 0.33 4 9960062 9974326

Neighbor

gene id symbol gene type direction distance location
AMCG00007283 tnnt3b,LOC105906454,LOC107703302,LOC107742575 coding downstream 16838 9939191 ~ 9943224 (-)
AMCG00007274 ush1c,LOC106561052 coding downstream 167895 9754924 ~ 9792167 (-)
AMCG00007273 abcc8 coding downstream 210020 9690273 ~ 9750042 (-)
AMCG00007271 kcnj11,LOC106561047 coding downstream 272799 9686106 ~ 9687263 (-)
AMCG00007272 ext2 coding downstream 276983 9644435 ~ 9683079 (-)
AMCG00007279 NA coding upstream 24319 10025484 ~ 10031683 (-)
AMCG00007280 LOC107758757,LOC107549278 coding upstream 34376 10035541 ~ 10037117 (-)
AMCG00007281 LOC105900426,LOC103035847,LOC108428822 coding upstream 48016 10049181 ~ 10056129 (-)
AMCG00007291 NA coding upstream 90148 10091313 ~ 10096701 (-)
AMCG00007290 NA coding upstream 160287 10161452 ~ 10186176 (-)
G22416 alx4,alx4a,LOC107754690,LOC107593440,LOC107683603,LOC103356993 non-coding downstream 319233 9633809 ~ 9640829 (-)
G22415 alx4,LOC107593440,LOC106587508,LOC107688160,LOC107750553,LOC107683603,LOC107754690 non-coding downstream 335184 9624566 ~ 9624878 (-)
G22414 LOC106562319,LOC107683603,LOC107754690,LOC106587508,LOC107750553,LOC107688160 non-coding downstream 360908 9598692 ~ 9599154 (-)
G22393 NA non-coding downstream 522793 9417768 ~ 9437269 (-)
G22305 NA non-coding downstream 775233 9181018 ~ 9184829 (-)
G22505 NA non-coding upstream 31963 10033128 ~ 10044315 (-)
G22513 NA non-coding upstream 84595 10085760 ~ 10086383 (-)
G22619 api5 non-coding upstream 372574 10373739 ~ 10375219 (-)
G22660 NA non-coding upstream 545831 10546996 ~ 10578902 (-)
G22680 clg19h11orf96 non-coding upstream 610024 10611189 ~ 10612988 (-)
AMCG00007267 NA other downstream 496725 9457488 ~ 9463337 (-)
G22200 NA other downstream 1563838 8393196 ~ 8396224 (-)
G21942 NA other downstream 2453187 7499447 ~ 7506875 (-)
AMCG00007201 NA other downstream 2617721 7324424 ~ 7342341 (-)
AMCG00007173 madd other downstream 3905998 6007640 ~ 6054064 (-)
AMCG00007299 NA other upstream 151315 10152480 ~ 10246746 (-)
AMCG00007289 bet1l,LOC107740886 other upstream 186143 10187308 ~ 10190204 (-)
AMCG00007298 NA other upstream 263880 10265045 ~ 10272695 (-)
G22838 NA other upstream 3350352 13351517 ~ 13352073 (-)
G22931 LOC100846954 other upstream 3944478 13945643 ~ 13946065 (-)

Expression


Co-expression Network