AMCG00007273 (abcc8)


Basic Information

Item Value
gene id AMCG00007273
gene name abcc8
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 9690273 ~ 9750042 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007273
AGCCCCAGCTCCACCATGTCCTTGGCTTTCTGTGGCAATGACAACAATTCTGCCGCTTACAATGTGGACAAGGGGGTGCTTAACAACGGCTGCTTTCTGGATGCCCTCAGCGTGGTGCCTCATGTGTTTCTTCTATTTATAACTTTCCCTATATTATTCATCGGCTGGGGGAGTCAGAGTTCAAAGGTGCACATCCATCACAGCACGTGGCTGCACTTCCCAGGGCATAACCTGCGCTGGATCCTGACCTTCATCCTCCTGTTTGTGTTGGTATGCGAGATTGCTGAGGGCATTGTGTCAGATGGCTGCACAGAGTCTCACCACCTGCACCTCTATATGCCGGCAGGCCTGGCATTCGTGGCTGCAGTCACCTCCATCATCTACTACCACAATATCGAGACCTCAAACTTCCCCAAGTTACTGCTCGCTCTGCTGGTCTACTGGATTTTGGCTTTTGTCACCAAAACCATCAAGTTCTCCAAATACTGTGAGCACGGGATTGGTTTGACCCAGCTGCGCTTCTGCATCACGGGGCTGCTGGTGGCGCTGTATGGCATGCTGCTGGCCGTGGAGATCAATGTCATTCTAGCCAGGCGCTATGTGTGTTTCAAACACCCCACAGAGGTCAAGCCTCCAGAAGACCTGCAGGACCTGGGCGTGCGCTTCCTGCAGCCCTTCGTCAACCTGCTATCTAAGGGCACCTACTGGTGGATGAATACTTTCATCACCTCTGCCCACAGGCGGCCCATCGACCTAAAGGGGATCGGCAGGCTGCCCATCACAATGAGGGCCCTCACTAACTACCTGCGCCTCCGGAAGGCCTTTGAAGCACAAAAGAAAAAGGGCTCTTCTTACCCACAGGGACCAAAGTCAATCTGGGGAGCTCTGCGGCACGCGTTCGGACGGCCACTCATTCTCAGCATCACCTTCCGCTTCCTGGCAGATCTGCTGGGCTTTGCAGGGCCGTTGTGCATCTCAGGCATCGTCCATCACATCAGTAAGGAGAACAAGACCATTATCCCTCCAATGAAACTGCTGGGGGTCTATTTCATTTCTTCCCAAGAGTTCCTGGCCAATGCATATGTCTTGgctgttcttctgttttttgccCTTCTGCTGCAAAGGACATTCCTTCAGGCTTCTTATTACGTGGCGATCGAAACAGGGATTAATCTGAGAGGGGCAATACAAACAAAAATCTATAACAAAATCATGCGTCTGTGCACGTCAAACATGTCAATGGGGGAAATGACAGTGGGACAGATTTGTAATCTGGTTGCCATAGATACCAATCAGCTGATGTGGTTTTTCTTCCTCTGCCCTAACCTCTGGGCCATGCCAGTTCAAATCGTTGTGGGAGTCATCCTCCTGTACTATCTCCTGGGAATAAGTGCCTTGATTGGTGCCACTGTCATTGCAGTCCTGGCACCAGTGCAGTATTTTGTGGCTACCAAACTGTCCCAAGCACAGAAAAGCACTTTAGAGTATTCCAATGAACGCCTGAAGAAAACCAATGAGCTTCTGAGGGGGATCAAGCTGCTAAAGCTGTATGCCTGGGAACACATTTTCCATGACAGTGTGGAGGAGACGCGGCAGAAGGAGCTAACCAGTCTCAAATCCTTTGCTCTTTACACCTCCATTTCCAttttcatGAATGCAGCTATTCCAATCGCGGCAGTTCTCACTACGTTTGTGGTCCATGCCCATCTCTCCGAGGATGCTGACCTCTCCCCTGCTGTGGCCTTcgcttctctctccctcttccacaTCCTGGTCACCCCACTCTTCCTCCTGTCCAGCGTGGTGCGCTCCACTGTCAAAGCCCTCGTCAGCGTACAGAAACTGAGTGAGTTCTTCTCCAGTGAGGAGATTGGGGAGGAGCATGACACCAAGACTGCTGCTCCCCCGAGCTCTGGGAACCACACCAAATACCAGGCCCTTCCTTTGAAGGTGGTGAACCGCAAGCGCCCGGCCAGGGACGAATGGAACAACTACAGCtcccagagagacagagagacgcCAGACCAGGAGGGAGAGGATATCTGTATCAAGATAATGAATGGATACTTTACCTGGATGCCAGACGGGTCCCCTACATTGTCTAATGTAGATATAAAGATTCCCTCTGGTCAGTTGACTATGATTGTAGGACAAGTGGGCTGTGGCAAGTCCTCTTTGCTTCTTGCCGCACTAGGAGAAATGCAGAAGATATCAGGGACCATTTACTGGAACAGCTTAAAATATGGTTTCTGCATTGGGTGTAATTCTGTGATGAACAGTGCTGCCAGTAGTTTACCTGACTGGGTCTcttattttcacagtttacCCAACCAAGATTCAGAAGGAGATGAAAGttGGAGAAATTACATGAAGGTCATATTCGATGTCATATTTGTCTATGGCAGGAAAAGAGGGTCGGTGGCATACGCTTCCCAGAAGGCTTGGCTCTTGAATGCCACAGTGGTGGAGAACATCATCTTCGAGATGCCCTTCAATAAACAGAGGTACAAAGCTGTCATTGAGGCTTGTTCACTTCAGCCAGACATTGACATCCTGCCACTTGGGGACCAGACACTGATAGGAGAGCGGgGGATCATTCTCTCTGGGGGGCAGCGTCAGCGCATTAGCGTGGCCAGATCACTTTACCAACAGACCAATGTGGTTTTCCTGGATGACCCTTTCTCAGCCCTGGACATTCATCTGAGTGATCATCTGATGCAGGAAGGAATCTTGAAGCTGCTGAGGGAAGAAAAGAGAACAGTGGTCCTGGTCACCCACAAGTTACAGTACCTCCCCCATGCGGACTGGATCATTGCGATGAAAGATGGTACTATTCAGAAAGAAGGCACGCTGAAAGATATCCAGAACTCGGAGCCAGAGCTTTTTGAACATTGGAAATCCCTGATGAACCGTCAGGATCAGGAGCTGGAAAAGGAGACGGTGGCAGAGAGTACAACAGTTTTGGAGAGGAAGAACCTGAGGAGAGCCATGTACTCGAGAGAGGTTGTCCTGAAGactgaagatgaagatgaagAGGAATCCACAGAGAGCGACGATGAGGATGACTTGTCGTCCGTGCTGCGCCACCGAGCTACCATCCCCTGGAGGTCCTGTGGGACCTACCTCAGCTCAGCCGGCCTGCTACTCCTCCCGCTCCTGCTGCTCTCCCAGCTCTTCAAGCACTCCCTAATGCTGGCCATCGACTACTGGCTGGCCAAATGGACCTCCGACGTCATCACTGCCAAGAATGAGGCAACAGGCAAGAACTGCACCAGTGCCCAGGAGTGCAGCTTCAGCCACTCATCGTACTCCCTGGTgttcagtgtgctgtgctgcctgggCATCGCACTGTGCCTCGTCACCTCCGTGGCGGTGGAGTGCACTGGGCTCCGTGTTGCCAAGGAGCTGCACCACAGTCTGCTAAACAAGATTATCCTGGCACCCATGAGGCTTTTTGAAACCACGCCTCTTGGAAATATTCTGAACAGGTTCTCTGCTGACATCAATACTATTGACCAGCACATCCCAGCCACACTGGAGTGTCTCAGCCGCTCCACTCTGTTGTGTGTCTCGGCTCTCGGGGTCATCTCCTACGTCACGCCTGTGTTCCTCATTGCGCTTGTTCCCCTCGCCATCGCCTGCTATTTCATCCAGAAATACTTCAGAGTGGCATCCAGGGACCTGCAGCAGCTAGATGACAGCACCCAGCTTCCCCTGCTCTCTCATTTCTCTGAAACTGTGGAGGGACTGACAACCATCCGGGCTTTCAGGTATGAGGCCAAATTCCGACAGAAGCTTCTAGAATACACCGATGCCAATAACATTGCCTCCCTGTTTCTTACTGCCGCCAATCGCTGGCTGGAGGTTCGTATGGAGTATATCGGGGCCTGTGTGGTCCTCATTGCAGCAGTCGCCTCCATCACCAACTCGCTGTACTACCAGCTGTCGTCCGGCCTTGTGGGGCTGGGCCTAACATATGCACTCATGGTGTCTAATTATCTCAACTGGATGGTGCGCAACCTGGCAGACATGGAGGTGCAACTGGGAGCCGTGAAAAGAATCAATGGGCTTTTGCAGGTCGAGCCCGAGAATTATGACGGCCTCCTTTCCGTGTCACAAATTCCCGCCAGCTGGCCCCAGCAAGGGGAGATTCAGATCCAGAACTTGAGTGTGCGCTATGACACCACTCTGAAGCCGGTCCTGAAGCACGTCAACGCCCACATCACACCTGGCCAAAAGGTTGGCATATGTGGGCGTACTGGAAGTGGAAAGTCATCTTTCTCTTTGGCCTTTTTCAGAATGGTTGATACGTTTGAAGGAAGAATCATCATAGATGGGATAGATATTGCAAAGCTGCCTTTACAGACTCTCAGATCCCGATTCTCAATCATTCTCCAAGATCCCATTTTATTCAGCGGCACAATCCGGTTTAATTTGGACCCAGAAGGGAAGTGTACAGACAGCATGCTTTGGGAAGCCTTGGAAATAGCCCAGCTCAAGCCTGTCGTCAAAGCTCTTCCTGGAGGTTTAGATGCAATGGTTACTGAAGGAGGGGAGAACTTCAGCCTGGGGCAACGTCAGCTGTTCTGCCTGGCGAGGGCATTTGTGCGGAAGAGCAGCATTTTGATCATGGATGAAGCCACTGCTTCAATAGACATGGCCACGgaaagtattttacagaagGTTGTGATGACAGCATTTGCTGATCGAACTGTGGTTACAATAGCACACCGTGTCCATACAATATTGAATGCTGATTTGGTTATAGTTATGAAGCGAGGGATCATTTTGGAATATGACAAGCCGGAGGCTCTGCTGGAACGGGAGGACAGCATCTTTGCCTCTTTTGTCCAAGCAGACAAATAA

Function

symbol description
abcc8 Predicted to enable ATPase-coupled transmembrane transporter activity. Predicted to be involved in transmembrane transport. Predicted to act upstream of or within potassium ion transport. Predicted to be integral component of membrane. Predicted to be active in membrane. Is expressed in diencephalon; forebrain; hindbrain; and midbrain. Human ortholog(s) of this gene implicated in familial hyperinsulinemic hypoglycemia 1; glucose metabolism disease (multiple); hypertension; and leucine-sensitive hypoglycemia of infancy. Orthologous to human ABCC8 (ATP binding cassette subfamily C member 8).

NR:

description
PREDICTED: ATP-binding cassette sub-family C member 8 isoform X5

GO: NA

KEGG:

id description
K05032 ABCC8, SUR1; ATP-binding cassette subfamily C (CFTR/MRP) member 8

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007273 True 4866 mRNA 0.51 38 9690273 9750042

Neighbor

gene id symbol gene type direction distance location
AMCG00007271 kcnj11,LOC106561047 coding downstream 3010 9686106 ~ 9687263 (-)
AMCG00007272 ext2 coding downstream 7194 9644435 ~ 9683079 (-)
AMCG00007269 NA coding downstream 178934 9495648 ~ 9511339 (-)
AMCG00007266 nat10 coding downstream 202585 9473893 ~ 9487688 (-)
AMCG00007268 NA coding downstream 263491 9411640 ~ 9426782 (-)
AMCG00007274 ush1c,LOC106561052 coding upstream 4882 9754924 ~ 9792167 (-)
AMCG00007283 tnnt3b,LOC105906454,LOC107703302,LOC107742575 coding upstream 189149 9939191 ~ 9943224 (-)
AMCG00007279 NA coding upstream 275442 10025484 ~ 10031683 (-)
AMCG00007280 LOC107758757,LOC107549278 coding upstream 285499 10035541 ~ 10037117 (-)
AMCG00007281 LOC105900426,LOC103035847,LOC108428822 coding upstream 299139 10049181 ~ 10056129 (-)
G22416 alx4,alx4a,LOC107754690,LOC107593440,LOC107683603,LOC103356993 non-coding downstream 49444 9633809 ~ 9640829 (-)
G22415 alx4,LOC107593440,LOC106587508,LOC107688160,LOC107750553,LOC107683603,LOC107754690 non-coding downstream 65395 9624566 ~ 9624878 (-)
G22414 LOC106562319,LOC107683603,LOC107754690,LOC106587508,LOC107750553,LOC107688160 non-coding downstream 91119 9598692 ~ 9599154 (-)
G22393 NA non-coding downstream 253004 9417768 ~ 9437269 (-)
G22305 NA non-coding downstream 505444 9181018 ~ 9184829 (-)
G22505 NA non-coding upstream 283086 10033128 ~ 10044315 (-)
G22513 NA non-coding upstream 335718 10085760 ~ 10086383 (-)
G22619 api5 non-coding upstream 623697 10373739 ~ 10375219 (-)
G22660 NA non-coding upstream 796954 10546996 ~ 10578902 (-)
G22680 clg19h11orf96 non-coding upstream 861147 10611189 ~ 10612988 (-)
AMCG00007267 NA other downstream 226936 9457488 ~ 9463337 (-)
G22200 NA other downstream 1294049 8393196 ~ 8396224 (-)
G21942 NA other downstream 2183398 7499447 ~ 7506875 (-)
AMCG00007201 NA other downstream 2347932 7324424 ~ 7342341 (-)
AMCG00007173 madd other downstream 3636209 6007640 ~ 6054064 (-)
AMCG00007282 NA other upstream 210020 9960062 ~ 10001165 (-)
AMCG00007299 NA other upstream 402438 10152480 ~ 10246746 (-)
AMCG00007289 bet1l,LOC107740886 other upstream 437266 10187308 ~ 10190204 (-)
AMCG00007298 NA other upstream 515003 10265045 ~ 10272695 (-)
G22838 NA other upstream 3601475 13351517 ~ 13352073 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location