G21550


Basic Information

Item Value
gene id G21550
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 5559594 ~ 5562208 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU26960
ttttctttaaaatgaaaatttaTTGTGTGCCTGAAAGAATGGAGATCAACTTGGTTTAAAGATTTAAACATagagcatatttattttttccccaacatagaaaaacaaaacagaatcattttagaaaaaacaGTGATACTGAAGAAAATGTCAAATCAAACGAGAATCTTGAAAGGCAATTCCACGGAGTTCAGCCCAGTCCTCCATCGCACTCCTTTTACAAAATTCATTTCCAATCAAATGACTCAATGcgtcaaattaaaatgttacctGCCCCCGTACCAGAGTTCTGATGAGAAGTAGCCAGCAGCAGATTATGTGCAAACAACTGAATCCATCACTGAAACTGTCATTTatgctttgaaataataaaaaaatacatttatttattcccacTTGGCTAAACTGCATGAAACGTTTCCCACAGGTTCCACAACAGAAGTGTCCCTCCTACACCTTCGATCTTTACACAGCAGAACTGCTGTCTGTAGGTACATCCATTTCTATTTACAAAGTGAGATGAGCAACGCTTTTTGGAAACTGAAAAAGCACAATATACAGCGATCAGTTCATGCCTGCCTCTTAAACCCCCCCCATGTGCTGAGAATTCAcagatttaaacacacacattttgaaaggcaaaaaaaaaaaaaaaaaaatagcaactTCCATGTTCTCTAATAATATGCATAGCCTTCAGAAAAAACTTAGAACTGAAAGGGCCATTTTAAATCCCAGAACTAagcaattaattgattaattaattaattggttaattacaAATGCTAATTTGTCAATGTTTTGCTGTATACTTGAGAGAGAAACAATTTTGGCAATGACTTTTTGCTTTAAGGTATCCGAGCTTCCTTTCGTAACGAGGGAACTAGGTGCCGAAGCACAGAAATGGATCATATCAAGTTAGAGGCTTCTGAACCGCTGTTCTGGCTGGAGGCCATGATCCACTGCATTAATACCAACTGGTCTGTTAAAATAAACTCTAAAGGacatttgtcttttaaagaTTCTTATACTACACACACTCTTCTTTCACGGGTTTTGCAACTCTTGACGGCGCCCAACTTTGCGCTCTTACTggcatctgtaaaaaaaaaaaaaaaaaaagacgataCTCCTGTAGGTTTAGCTGCACAACCTTTTCCATTTTGATGTCAAGTTGCTTTTTCTTTGAAAGACAGACCCCTCTGGTTAAAACAGGCAAACGTTTTCAATATccttttcaaaaacacacacacacacacaacccaatCATGCTCAATGCCTAGCTTGAGCTCAAATAATCTTAAATACAGAAACGCACTTCGTTTTCCCTGAATTCCACAGATCCTCTTTTAGGGACCAACGGCACGGTTTCAATGATTCTTCAACCACTTCACCACCCAGCAGACAGGAAAAACAGAGCGAGATACGACATCGGTGACAAGGGCTTCTAACAGAGCAGAGTGACTTCACTGTAACGGCTCGTATGTGCTCCTCCTGGGTACGTCTCTACTGGGCTGGGTCAGGGCAGTCTCTGGGTCTGGTGTCACATGGTGCCAGGAGCCACAGCTGAGCTACCCCTACACACCGAGAGACTGTTCATTATAATGTTTTGTCTGTTGTGCTTTTTGCTCATTGCCCAGTGCTATGTAAAGAAAGAAATTCACTTCCTTCCTGTCAATCACAGCACCTGTTACCTGAAAAGCTGAACTACTCAAGATAACGTCGCTCTGGACTGtagactttaaaacaaatgcaacaggGCGAGGGGCTAAAACTGGTTATACAACACTGAGCTGAGATATGCTTAAGGGTTAAACTGGTTCTGCACTATTTGTAAGATGGAAAAAGGGACTCATCTCTTAAATGCACGGTTAAAGTTCTGTGCTGAATTGCTACAATAAACTCCTATATCTATGTATCCAAACAAATGCAGTGCAGGAAGAGTCATCTAACAGCTGTGCTTTAAAGCATAGTTCTTGGAGGCAAATGGTCAACAGCTATAGAGCAGAATCTGTCCCAACTGCATGTGAATATCAACCTCTGGAACAGACTCTGCCAGAGGAATCGCACTGGACTCTGTGAGGCTTTGTGTCCAGTTGGCTCTGTTGTCTATTTACAATGGAAGAGGCCAATTATTATTCCCACAGTGGAAAACATTTGGTTCCAGAGTTCTctgtcacagaaaataaatataaaaaacctTCTACAACAGGCCCTGGCTTGTAACACAGAGgactctgagagagagaggtgagtcAGAGGCATCtagagaaataaatcaataaaaaccaAAGGACAGAACAGAGGCAGGCGGGACTCAATtcaaaggaggagaaaaaacacacttaaaaaaaacaaacaaaaaaaacaaaacaacagctggAAGTTCGAAAGCCCTGTTCCCCGGTTCCCACGGTACAAAAGTGCATCAGATATGGCGAGGGCAGCGTCCGCTGGGCGCCGGGATGTTCAGGCCGCCGCGCTGGCCGTCGTCGTAGTCGTCCGTGTCCGAGGAGCGCTCCTCATCGTTGCATGGCGCGGTGGAGGCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU26960 True 2549 lncRNA 0.42 2 5559594 5562208

Neighbor

gene id symbol gene type direction distance location
AMCG00007152 NA coding downstream 7283 5526982 ~ 5552311 (-)
AMCG00007151 NA coding downstream 57797 5496948 ~ 5501797 (-)
AMCG00007153 f2,LOC107554629 coding downstream 65790 5489195 ~ 5493804 (-)
AMCG00007149 NA coding downstream 73767 5471104 ~ 5485827 (-)
AMCG00007145 LOC107722349 coding downstream 112224 5438262 ~ 5447370 (-)
AMCG00007150 NA coding upstream 18576 5580784 ~ 5588229 (-)
AMCG00007156 rapsn coding upstream 30666 5592874 ~ 5605868 (-)
AMCG00007158 celf1,LOC106561939 coding upstream 51540 5613748 ~ 5628372 (-)
AMCG00007157 kbtbd4,LOC107738697,LOC107686314 coding upstream 111969 5674177 ~ 5677569 (-)
AMCG00007162 NA coding upstream 129934 5692142 ~ 5693305 (-)
G21536 NA non-coding downstream 35917 5521615 ~ 5523677 (-)
G21537 prdm11,LOC106560765 non-coding downstream 40843 5517227 ~ 5518751 (-)
G21535 NA non-coding downstream 43623 5514986 ~ 5515971 (-)
G21522 NA non-coding downstream 63859 5495349 ~ 5495735 (-)
G21462 NA non-coding downstream 427052 5132328 ~ 5132542 (-)
G21582 NA non-coding upstream 159055 5721263 ~ 5721542 (-)
G21646 NA non-coding upstream 352864 5915072 ~ 5988322 (-)
G21722 NA non-coding upstream 778571 6340779 ~ 6341171 (-)
G21739 NA non-coding upstream 956915 6519123 ~ 6519736 (-)
G21756 NA non-coding upstream 1004009 6566217 ~ 6569739 (-)
G21429 NA other downstream 502188 5056787 ~ 5057406 (-)
G21426 NA other downstream 510074 5041659 ~ 5049520 (-)
AMCG00007091 ckap5,LOC108269026 other downstream 2058924 3476068 ~ 3500670 (-)
AMCG00007072 NA other downstream 2895945 2644905 ~ 2663649 (-)
AMCG00007059 NA other downstream 3362739 2142675 ~ 2196855 (-)
G21632 psmc3,prs6a,LOC107758446 other upstream 254601 5816809 ~ 5820284 (-)
AMCG00007173 madd other upstream 445432 6007640 ~ 6054064 (-)
AMCG00007201 NA other upstream 1762216 7324424 ~ 7342341 (-)
G21942 NA other upstream 1937239 7499447 ~ 7506875 (-)
G22200 NA other upstream 2830988 8393196 ~ 8396224 (-)

Expression


Co-expression Network