AMCG00007162


Basic Information

Item Value
gene id AMCG00007162
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 5692142 ~ 5693305 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007162
ATGTCCCCAGCTGGGCCGCTCCTGATCGGGTTGCTGCTGCAGGCGACGGGTGCGGTGTTGTCGGCCTACATGGCGGAGGGGGTCCTGGAGCAGCGGTCCGCCTTCTCGGTGGCGCGGACCAGCAGCATGGAGGGGGGACCCAAGATGGTGGTGACTTTCGACAAGGTCTACGTCAACATCGGCGCGGACTTCGACCCCAAGACGGGCGTCTTCCGCTGCCGGATCCCGGGCGCCTACTACTTCTCCTTCACGGTGGGCAAGTTCCCCCGGAAGAACCTGTCAGTGATGCTGATGAAGAACAAGAATGAGGTGCAGGTCATCGTGTACGATGAACACCACAGCAAGGAGAGGAAGGTGCAGAGCCAGAGCGCCATGCTGCAGCTGGAGTTCGGCGACACCGTGTGGCTGCGGCTACACGGCGATCCAAAGTACGCGCTCTACAGCAACACCGGGCCCTACACCACCTTCAACGGCTACCTGATCTACCCCGACGTCTACGCCTTCCAGAGGAACGCCCTGCCTTTCCAGGAGCAGAGACACGGACACCTGGAGaccgtctcctcctcctcctctgccggGAAGGGCTGCGAGCGGGCGCGGGAGCCGGAGCACATGCAGTCTGATCAACCGGCGCCgccagaggaagaggaagaggtgagagagCGGGAagaagagaaggaggaagaggaggaggatccCAGGTCGGCGTTCTCCGTGGCCCGGAGCCAGAGCATCCTGGGGGAAGACCAGGGCATGGTCCAGCACCGGCCGATGACCTTCGACACGGATTTCGTGAACATCGGCAACGACTTCAACACTTCGGCCGGGGTGTTCACCTGCCGGGTGCCAGGCACCTACTACTTCTCATTCACCATCGGCAAGCTGCCCCACAAGACCATGTCGGTGAAGCTGATGAAGAACCACCTGGAGGTGCAGGCGATGATCTACGACGACAGCCACTCCAAGCGGCGGGAGATGCAGAGCCAGAGTCTGATGCTGTCGCTGCACAAGGGCGACACAGTCTGGCTCTACAGCCACCAGCACGAAGGCTACGGCGCCTACAGCAACCACGGCAAGTACATCACCTTCACGGGGTTCCTGGTGTACCCCGAGCCGGCGCCGCACAGACTGCAGAGCCCCACGAGGCAGAGGAACGAAATATGA

Function

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0035235 ionotropic glutamate receptor signaling pathway biological_process
GO:0007215 glutamate receptor signaling pathway biological_process
GO:0030001 metal ion transport biological_process
GO:0006813 potassium ion transport biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007162 True 1164 mRNA 0.62 1 5692142 5693305

Neighbor

gene id symbol gene type direction distance location
AMCG00007157 kbtbd4,LOC107738697,LOC107686314 coding downstream 14573 5674177 ~ 5677569 (-)
AMCG00007158 celf1,LOC106561939 coding downstream 63770 5613748 ~ 5628372 (-)
AMCG00007156 rapsn coding downstream 86274 5592874 ~ 5605868 (-)
AMCG00007150 NA coding downstream 103913 5580784 ~ 5588229 (-)
AMCG00007152 NA coding downstream 139831 5526982 ~ 5552311 (-)
AMCG00007163 NA coding upstream 41369 5734674 ~ 5752971 (-)
AMCG00007167 LOC106587439,LOC106587479,LOC104919254 coding upstream 133320 5826625 ~ 5841867 (-)
AMCG00007168 LOC103364365,LOC108229046,LOC101064922 coding upstream 165546 5858851 ~ 5859267 (-)
AMCG00007170 NA coding upstream 179471 5872776 ~ 5896585 (-)
AMCG00007172 nr1h3,LOC107553099,LOC107689968,LOC107664377 coding upstream 388230 6081535 ~ 6088041 (-)
G21550 NA non-coding downstream 129934 5559594 ~ 5562208 (-)
G21536 NA non-coding downstream 168465 5521615 ~ 5523677 (-)
G21537 prdm11,LOC106560765 non-coding downstream 173391 5517227 ~ 5518751 (-)
G21535 NA non-coding downstream 176171 5514986 ~ 5515971 (-)
G21522 NA non-coding downstream 196407 5495349 ~ 5495735 (-)
G21582 NA non-coding upstream 27958 5721263 ~ 5721542 (-)
G21646 NA non-coding upstream 221767 5915072 ~ 5988322 (-)
G21722 NA non-coding upstream 647474 6340779 ~ 6341171 (-)
G21739 NA non-coding upstream 825818 6519123 ~ 6519736 (-)
G21756 NA non-coding upstream 872912 6566217 ~ 6569739 (-)
G21429 NA other downstream 634736 5056787 ~ 5057406 (-)
G21426 NA other downstream 642622 5041659 ~ 5049520 (-)
AMCG00007091 ckap5,LOC108269026 other downstream 2191472 3476068 ~ 3500670 (-)
AMCG00007072 NA other downstream 3028493 2644905 ~ 2663649 (-)
AMCG00007059 NA other downstream 3495287 2142675 ~ 2196855 (-)
G21632 psmc3,prs6a,LOC107758446 other upstream 123504 5816809 ~ 5820284 (-)
AMCG00007173 madd other upstream 314335 6007640 ~ 6054064 (-)
AMCG00007201 NA other upstream 1631119 7324424 ~ 7342341 (-)
G21942 NA other upstream 1806142 7499447 ~ 7506875 (-)
G22200 NA other upstream 2699891 8393196 ~ 8396224 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_034939 c1qtnf4 coding NC_007118.7 CM002891.2 38600150 ~ 38634845 (-)
grasscarp (Ctenopharyngodon idella) CI01000026_10695298_10696443 C1QTNF4 coding CI01000026 null 10694795 ~ 10696652 (-)
rainbow trout (Oncorhynchus mykiss) G524555 c1qtnf4 non-coding NC_048570.1 CM023224.2 56960763 ~ 56972189 (+)
eurasian perch (Perca fluviatilis) G33168 NA non-coding NC_053114.1 CM020911.1 40920334 ~ 40925054 (-)