XLOC_034939 (c1qtnf4)


Basic Information

Item Value
gene id XLOC_034939
gene name c1qtnf4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 38600150 ~ 38634845 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00067945
GTGGAAATTGATCTATCTATGCTGACCTTTGCCCTCACAGCCTGATCTGATCGAGAAATCATCTGGACGTTCGCTTCAGGAGAGAAGTGGCTTGTACAACTGCATCTGTCAATCAGAAAAGAATCGTAGGAGTTACAATGCTGCCTGGTGCCAGGCCCCTGCTGCTGTGTGTGCTGAGTCATATGACTAGCGCATGGGCATTCTCCCGGATGTCGGACGCCGTGGAGCTGCGGTCTGCATTCTCGGTGGCACGTACCAGCAGCATGGAGGGAGGCCCGAAAATGGTCGTCACTTTCGACAAAGTGTACGTCAACATCGGCAGTGACTTTGATCCAAAGTCTGGCTTGTTCCGCTGCAGGATTCCAGGTGCCTACTATTTCTCCTTCACAGTGGGTAAGTTCCCCCGGCGAGACCTGTCGGTCATGCTAATGAAGAACCGCAATGAGGTTCAGGCGATCGTGTATGACGAGAACGCTGGAGAAGAGCGGAAAGTGCAGAGCCAGAGCGCCATGCTGCAGCTTGATTTTGGTGACACGGTCTGGCTTCGTCTTCATGGAGACCCTCGATACGCCATCTACAGCAACACGGGCCACTACACCACCTTCAACGGTTACCTGATCTACCCTGATGTGTATGGCTACCAAgagcacacacacaaagaacacGACAGTGCACACCAGCCCCCGAAAATCACTGATCACTTGCCATCTGAGCAAGAAAATACAATTACCAAAGACACTGCTGTGCGTATGAAGGAGGAGAGACGGGACGAGGAGGTAAAAGAGGAGGACAGCAGAGATGGAGAGGAGGAAGACGATGACCAAAGGTCAGCATTTTCAGTGGGCCGCACGCAAAGCATTGTAGGTGTGGATCAAGGACACCCTGAGCACCAGCCCATCATCTTTGACACAGAGTTCGTCAACATCGGCAACGACTTCAACTTGAGCTCGGGTGTTTTCAAATGCAGAGTAGCGGGGGCCTATTACTTCTCCTTCAATGCTGGCAAGCTGCCCCATAAGACCCTGTCAGTGAAGCTGATGAAGAATCATTTGGAGGTACAGACCATGATCTACGATGACAGTGACACTGAGAAGGCCCTGCAGAGCCAGAGTCTGATGTTGTCTCTgcaagatggagacactgtgtgGCTTTACAGCCACCAGAGGGATGGGTTTGGGGCTTACAGTAATCACGCCAAGTATATCACTTTCACTGGCTTCCTGGTGTATCCTGAGCTGCACCTCAGCCTTCCTCAGCCGCAGAAACAGGATAAGACACTGTAGGCCTGTCAGGGAGACAGTCTGTCTGTGGGTCTGGAAGAAGGGCAAGAGTTTGGAGGAGAATTTATGTGGAAAAATTTGGAGTTCCCTATATGTAATCTTCTATGCTCTAGAAAATCATCACTCCCTTCATTTGCTTTTTATGATTCATTATTACACAATTTCTCCTGCTCGTCCCATGTGTAAACAAAATGTCTGATTTTGGAAcattttcatgtaaaaaaaaaagagagagaaaaaggtgATCAAATAATCACGTTTTATATTTTACATCAAAATTTCGCAAAACCCCAAAAATGTTTCACATGTGATTGAACACTTTTACCCAGTTCATCTGCTTTACGAGGAATTATACAACCAAGAAATAACCTGAAATAACAAAGCCTCTTCTTGGCATCTTTAAAGTTGCAATGAAACAGAGAATGTGAACATTTTTTTCTCTGTTGTGATCAGTGAGATGGCTCTATGATACGATCTCGGGACTGACAGGCagtgggctctatgcacagctagtgtttttcagccaatgatgaacttccggggaaagctttatgtgactattttcaattttataaggttccCCTATAATGCACCGATGTTGTAGACGAAAAATGAATATATAGATGAAAAACCGTTTAAACACAGGtgccgtcattagcagcaggctagtgaaaaaaaaacctttgaaaatactggggtaaaattaatttccatattttaaagacatggcactgaaaaacagaatttaatgcagtgcttcttgtttggtccaCTTAATATCATATCAGCCAGGCAGTGATGatagctgttttttgtttttaaagaaatcagatctttaaCCCAGCAATTTTGTATAGGATGACAATTAACCAAAAGCATTGTGGCtggctaactgaaattaaaataggTGTGCATATACCCCAATGGATTGTTGTCCAGCTTTCATGATGGAATGCAAGTCAGAAATGTTTTTTGATGAAAGATTATAAGGGCACTTTTAAAATCATGTTCATGAAAAAATCTATTATGATAAAAACTGAAACATTGTGTAAgaatatttgaataattaattatttaacagTTCAATTAAATACAAGATCAATAGTATtcaaaaactaaatctaaaataaaagggTCACAACTCGACTGAACAATCTGAAACTGTTAGCACTGAAGCACCTATCCTGGCAGAGGCGATTCATTTGACAGTTTTTGCTCAAAACAGTTTCTATGATCTCTCAGATTTAATGAAGTTCCTAAATGCATgcatatttcaaatacaaaattgTGTTGTCTTTAAAACCTTTGCACGAAAATTTTGCACGAAAgctcagtttgcttttttctttattttttctgatGTAAAGTGATGATAATAAAAGTGatgacaacatttgctttccagtAAATCATGAGTCATGTAGTcagtcaattaattttttttcctggTTTTGGAACAGCACTACACAGTTAAACTGAGGATTGCTTCTGTAAATTCAATATGTATGGCAAAAAAGTGCCAATGCAAAAATGATTTCATTCACTGCCAAATACATTCACTGTACACCAACTGATGCTCACGATTTTTGAAAACTGttcaacaaatattatttatattttggaaaaaaagaaagTCTATTAAAGTTATCGATAAGTTTATATAACTCTTCTGGTTTGTGCTGTTGTGTCTACTGTAAATGGCCAAAAAGATTTATTTAGGTGAAGCATATTTATGAAGTGCACAATTCCAACATGTAAAtacttgtgtttttattttttatccatttctataTAAGTGAATGTTTGCATTTCTAATCCTGTGCCTGGTCTTATGTACTTTTTTCTGTATGGATTTATTCCAGTCAATAAACTTTGTGAAAGAAAGCTGAATAAGCTTTTCAATGTTTGTGCAGTATGAGCTACTTTAAGTACCGTAAAAGTGGTTTGAGTGTGAGCTGGATTCATATTGTGAAAGAATCCAGTCCCAGGAAGCAAACCAAATAAAAGCTCTGAATGT
>TCONS_00067946
CAATCCTCCATGATCAGGCTAATTTCACACAGCTAGCAGCCTACAGTACAGCTGATACAAGACTTCCACGACTAGTAGTCTCATCGCTTTTAGTGCTCTGAAGATTGTAATTTATTTGAGTGATATTGTAGGAATATTGTAGCTCTGAAGTTTTGATGTAATTCGGCGTCCATGTGCGGTACAGAAGCGGAGCGACGGAGAACTGTTCACTGCTCTAAGCCTCATTGCTCAAAGCACTCAGCTCAGTCATATCCAGATTGCTATAAATCCTGATCTGATCGAGAAATCATCTGGACGTTCGCTTCAGGAGAGAAGTGGCTTGTACAACTGCATCTGTCAATCAGAAAAGAATCGTAGGAGATAAACACACAGGCAAAACCCCCCGGAGTCTCCCTATTGATAGACCTTGTAGAACGGCTGTTCATTCGTCTGCTCCAGAGCCCCCCAATCAGCTTGCAGCACCCCGATTGCTCTTAAATCCTCCAATGACTGTattggagagtgtgtgtgtgtgagtgtgcgcgcTTGAATGTGTGGGTGTGTGCTGCACCAGACATCAGCAGCAGGTTGAGAGCTGACACACAGAGGAAGCAAGAGAGAAGAAAAGAATAAAGGgcgagaaagaaaaagagaaagaggcACTCCTCCATTCAGACCTCTGAGAGAACTTCAAGAGCGCTTCCTGCAGATCTAAACACACAGTTACAATGCTGCCTGGTGCCAGGCCCCTGCTGCTGTGTGTGCTGAGTCATATGACTAGCGCATGGGCATTCTCCCGGATGTCGGACGCCGTGGAGCTGCGGTCTGCATTCTCGGTGGCACGTACCAGCAGCATGGAGGGAGGCCCGAAAATGGTCGTCACTTTCGACAAAGTGTACGTCAACATCGGCAGTGACTTTGATCCAAAGTCTGGCTTGTTCCGCTGCAGGATTCCAGGTGCCTACTATTTCTCCTTCACAGTGGGTAAGTTCCCCCGGCGAGACCTGTCGGTCATGCTAATGAAGAACCGCAATGAGGTTCAGGCGATCGTGTATGACGAGAACGCTGGAGAAGAGCGGAAAGTGCAGAGCCAGAGCGCCATGCTGCAGCTTGATTTTGGTGACACGGTCTGGCTTCGTCTTCATGGAGACCCTCGATACGCCATCTACAGCAACACGGGCCACTACACCACCTTCAACGGTTACCTGATCTACCCTGATGTGTATGGCTACCAAgagcacacacacaaagaacacGACAGTGCACACCAGCCCCCGAAAATCACTGATCACTTGCCATCTGAGCAAGAAAATACAATTACCAAAGACACTGCTGTGCGTATGAAGGAGGAGAGACGGGACGAGGAGGTAAAAGAGGAGGACAGCAGAGATGGAGAGGAGGAAGACGATGACCAAAGGTCAGCATTTTCAGTGGGCCGCACGCAAAGCATTGTAGGTGTGGATCAAGGACACCCTGAGCACCAGCCCATCATCTTTGACACAGAGTTCGTCAACATCGGCAACGACTTCAACTTGAGCTCGGGTGTTTTCAAATGCAGAGTAGCGGGGGCCTATTACTTCTCCTTCAATGCTGGCAAGCTGCCCCATAAGACCCTGTCAGTGAAGCTGATGAAGAATCATTTGGAGGTACAGACCATGATCTACGATGACAGTGACACTGAGAAGGCCCTGCAGAGCCAGAGTCTGATGTTGTCTCTgcaagatggagacactgtgtgGCTTTACAGCCACCAGAGGGATGGGTTTGGGGCTTACAGTAATCACGCCAAGTATATCACTTTCACTGGCTTCCTGGTGTATCCTGAGCTGCACCTCAGCCTTCCTCAGCCGCAGAAACAGGATAAGACACTGTAGGCCTGTCAGGGAGACAGTCTGTCTGTGGGTCTGGAAGAAGGGCAAGAGTTTGGAGGAGAATTTATGTGGAAAAATTTGGAGTTCCCTATATGTAATCTTCTATGCTCTAGAAAATCATCACTCCCTTCATTTGCTTTTTATGATTCATTATTACACAATTTCTCCTGCTCGTCCCATGTGTAAACAAAATGTCTGATTTTGGAAcattttcatgtaaaaaaaaaagagagagaaaaaggtgATCAAATAATCACGTTTTATATTTTACATCAAAATTTCGCAAAACCCCAAAAATGTTTCACATGTGATTGAACACTTTTACCCAGTTCATCTGCTTTACGAGGAATTATACAACCAAGAAATAACCTGAAATAACAAAGCCTCTTCTTGGCATCTTTAAAGTTGCAATGAAACAGAGAATGTGAACATTTTTTTCTCTGTTGTGATCAGTGAGATGGCTCTATGATACGATCTCGGGACTGACAGGCagtgggctctatgcacagctagtgtttttcagccaatgatgaacttccggggaaagctttatgtgactattttcaattttataaggttccCCTATAATGCACCGATGTTGTAGACGAAAAATGAATATATAGATGAAAAACCGTTTAAACACAGGtgccgtcattagcagcaggctagtgaaaaaaaaacctttgaaaatactggggtaaaattaatttccatattttaaagacatggcactgaaaaacagaatttaatgcagtgcttcttgtttggtccaCTTAATATCATATCAGCCAGGCAGTGATGatagctgttttttgtttttaaagaaatcagatctttaaCCCAGCAATTTTGTATAGGATGACAATTAACCAAAAGCATTGTGGCtggctaactgaaattaaaataggTGTGCATATACCCCAATGGATTGTTGTCCAGCTTTCATGATGGAATGCAAGTCAGAAATGTTTTTTGATGAAAGATTATAAGGGCACTTTTAAAATCATGTTCATGAAAAAATCTATTATGATAAAAACTGAAACATTGTGTAAgaatatttgaataattaattatttaacagTTCAATTAAATACAAGATCAATAGTATtcaaaaactaaatctaaaataaaagggTCACAACTCGACTGAACAATCTGAAACTGTTAGCACTGAAGCACCTATCCTGGCAGAGGCGATTCATTTGACAGTTTTTGCTCAAAACAGTTTCTATGATCTCTCAGATTTAATGAAGTTCCTAAATGCATgcatatttcaaatacaaaattgTGTTGTCTTTAAAACCTTTGCACGAAAATTTTGCACGAAAgctcagtttgcttttttctttattttttctgatGTAAAGTGATGATAATAAAAGTGatgacaacatttgctttccagtAAATCATGAGTCATGTAGTcagtcaattaattttttttcctggTTTTGGAACAGCACTACACAGTTAAACTGAGGATTGCTTCTGTAAATTCAATATGTATGGCAAAAAAGTGCCAATGCAAAAATGATTTCATTCACTGCCAAATACATTCACTGTACACCAACTGATGCTCACGATTTTTGAAAACTGttcaacaaatattatttatattttggaaaaaaagaaagTCTATTAAAGTTATCGATAAGTTTATATAACTCTTCTGGTTTGTGCTGTTGTGTCTACTGTAAATGGCCAAAAAGATTTATTTAGGTGAAGCATATTTATGAAGTGCACAATTCCAACATGTAAAtacttgtgtttttattttttatccatttctataTAAGTGAATGTTTGCATTTCTAATCCTGTGCCTGGTCTTATGTACTTTTTTCTGTATGGATTTATTCCAGTCAATAAACTTTGTGAAAGAAAGCTGAATAAGCTTTTCAATGTTTGTGCAGTATGAGCTACTTTAAGTACCGTAAAAGTGGTTTGAGTGTGAGCTGGATTCATATTGTGAAAGAATCCAGTCCCAGGAAGCAAACCAAATAAAAGCTCTGAATGT
>TCONS_00067947
AGCAGGTTGAGAGCTGACACACAGAGGAAGCAAGAGAGAAGAAAAGAATAAAGGgcgagaaagaaaaagagaaagaggcACTCCTCCATTCAGACCTCTGAGAGAACTTCAAGAGCGCTTCCTGCAGATCTAAACACACAGTTACAATGCTGCCTGGTGCCAGGCCCCTGCTGCTGTGTGTGCTGAGTCATATGACTAGCGCATGGGCATTCTCCCGGATGTCGGACGCCGTGGAGCTGCGGTCTGCATTCTCGGTGGCACGTACCAGCAGCATGGAGGGAGGCCCGAAAATGGTCGTCACTTTCGACAAAGTGTACGTCAACATCGGCAGTGACTTTGATCCAAAGTCTGGCTTGTTCCGCTGCAGGATTCCAGGTGCCTACTATTTCTCCTTCACAGTGGGTAAGTTCCCCCGGCGAGACCTGTCGGTCATGCTAATGAAGAACCGCAATGAGGTTCAGGCGATCGTGTATGACGAGAACGCTGGAGAAGAGCGGAAAGTGCAGAGCCAGAGCGCCATGCTGCAGCTTGATTTTGGTGACACGGTCTGGCTTCGTCTTCATGGAGACCCTCGATACGCCATCTACAGCAACACGGGCCACTACACCACCTTCAACGGTTACCTGATCTACCCTGATGTGTATGGCTACCAAgagcacacacacaaagaacacGACAGTGCACACCAGCCCCCGAAAATCACTGATCACTTGCCATCTGAGCAAGAAAATACAATTACCAAAGACACTGCTGTGCGTATGAAGGAGGAGAGACGGGACGAGGAGGTAAAAGAGGAGGACAGCAGAGATGGAGAGGAGGAAGACGATGACCAAAGGTCAGCATTTTCAGTGGGCCGCACGCAAAGCATTGTAGGTGTGGATCAAGGACACCCTGAGCACCAGCCCATCATCTTTGACACAGAGTTCGTCAACATCGGCAACGACTTCAACTTGAGCTCGGGTGTTTTCAAATGCAGAGTAGCGGGGGCCTATTACTTCTCCTTCAATGCTGGCAAGCTGCCCCATAAGACCCTGTCAGTGAAGCTGATGAAGAATCATTTGGAGGTACAGACCATGATCTACGATGACAGTGACACTGAGAAGGCCCTGCAGAGCCAGAGTCTGATGTTGTCTCTgcaagatggagacactgtgtgGCTTTACAGCCACCAGAGGGATGGGTTTGGGGCTTACAGTAATCACGCCAAGTATATCACTTTCACTGGCTTCCTGGTGTATCCTGAGCTGCACCTCAGCCTTCCTCAGCCGCAGAAACAGGATAAGACACTGTAGGCCTGTCAGGGAGACAGTCTGTCTGTGGGTCTGGAAGAAGGGCAAGAGTTTGGAGGAGAATTTATGTGGAAAAATTTGGAGTTCCCTATATGTAATCTTCTATGCTCTAGAAAATCATCACTCCCTTCATTTGCTTTTTATGATTCATTATTACACAATTTCTCCTGCTCGTCCCATGTGTAAACAAAATGTCTGATTTTGGAAcattttcatgt

Function

symbol description
c1qtnf4 Is expressed in brain. Orthologous to human C1QTNF4 (C1q and TNF related 4).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-050417-198 Is expressed in brain. Orthologous to human C1QTNF4 (C1q and TNF related 4).

Ensembl:

ensembl_id ENSDARG00000024299

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00067945 False 3297 mRNA 0.41 2 38600150 38633867
TCONS_00067946 False 3867 mRNA 0.41 4 38600150 38634845
TCONS_00067947 True 1507 mRNA 0.50 2 38601949 38612230

Neighbor

gene id symbol gene type direction distance location
XLOC_034938 CR318601.1 coding downstream 22895 38573917 ~ 38577255 (-)
XLOC_034936 celf1 coding downstream 29210 38535934 ~ 38570940 (-)
XLOC_034937 BX571680.1 coding downstream 59717 38539306 ~ 38540433 (-)
XLOC_034935 zgc:165481 coding downstream 122915 38456426 ~ 38477235 (-)
XLOC_034934 BX323855.2 coding downstream 205082 38357915 ~ 38395068 (-)
XLOC_034940 c6ast4 coding upstream 693 38635538 ~ 38638809 (-)
XLOC_034941 c6ast3 coding upstream 7269 38642114 ~ 38644560 (-)
XLOC_034942 BX957297.2 coding upstream 14743 38649588 ~ 38651305 (-)
XLOC_034943 npsn coding upstream 18636 38653481 ~ 38659477 (-)
XLOC_034944 c6ast1 coding upstream 26262 38661107 ~ 38664969 (-)
XLOC_034931 NA non-coding downstream 342290 38202545 ~ 38257860 (-)
XLOC_034932 NA non-coding downstream 351018 38237231 ~ 38249132 (-)
XLOC_034948 BX957256.1 non-coding upstream 121481 38756326 ~ 38767909 (-)
XLOC_034952 CR382325.1 non-coding upstream 343157 38978002 ~ 38980678 (-)
XLOC_034953 CR356225.1 non-coding upstream 501805 39136650 ~ 39136774 (-)
XLOC_034955 CABZ01033553.1 non-coding upstream 600150 39234995 ~ 39235112 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000026_10695298_10696443 C1QTNF4 coding CI01000026 null 10694795 ~ 10696652 (-)
bowfin (Amia calva) AMCG00007162 NA coding CM030123.1 CM030123.1 5692142 ~ 5693305 (-)