Gene
RNA
| Item | Value |
|---|---|
| gene id | XLOC_034932 |
| gene name | NA |
| gene type | non-coding |
| species | zebrafish (Danio rerio) |
| category of species | model fish |
| Item | Value |
|---|---|
| chromosome id | NC_007118.7 |
| NCBI id | CM002891.2 |
| chromosome length | 74282399 |
| location | 38237231 ~ 38249132 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| id | name | namespace |
|---|---|---|
| GO:0007178 | transmembrane receptor protein serine/threonine kinase signaling pathway | biological_process |
| GO:0048729 | tissue morphogenesis | biological_process |
| GO:0001706 | endoderm formation | biological_process |
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0007498 | mesoderm development | biological_process |
| GO:0002009 | morphogenesis of an epithelium | biological_process |
| GO:0090008 | hypoblast development | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0060429 | epithelium development | biological_process |
| GO:0090092 | regulation of transmembrane receptor protein serine/threonine kinase signaling pathway | biological_process |
| GO:0010467 | gene expression | biological_process |
| GO:0009953 | dorsal/ventral pattern formation | biological_process |
| GO:0000184 | nuclear-transcribed mRNA catabolic process, nonsense-mediated decay | biological_process |
| GO:0007369 | gastrulation | biological_process |
| GO:0048645 | animal organ formation | biological_process |
| GO:0003002 | regionalization | biological_process |
| GO:0007389 | pattern specification process | biological_process |
| GO:0008380 | RNA splicing | biological_process |
| GO:0060063 | Spemann organizer formation at the embryonic shield | biological_process |
| GO:0009790 | embryo development | biological_process |
| GO:0003723 | RNA binding | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TCONS_00069275 | True | 910 | lncRNA | 0.31 | 2 | 38237231 | 38249132 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| XLOC_034930 | abcc12 | coding | downstream | 53900 | 38158604 ~ 38183331 (-) |
| XLOC_034929 | NA | coding | downstream | 95185 | 38140666 ~ 38142046 (-) |
| XLOC_034928 | cebpa | coding | downstream | 149366 | 38084986 ~ 38087865 (-) |
| XLOC_034927 | BX323060.3 | coding | downstream | 198185 | 38036841 ~ 38039046 (-) |
| XLOC_034926 | heatr3 | coding | downstream | 317756 | 37898618 ~ 37919475 (-) |
| XLOC_034933 | slc7a10a | coding | upstream | 66515 | 38315647 ~ 38340674 (-) |
| XLOC_034934 | BX323855.2 | coding | upstream | 108783 | 38357915 ~ 38395068 (-) |
| XLOC_034935 | zgc:165481 | coding | upstream | 207294 | 38456426 ~ 38477235 (-) |
| XLOC_034936 | celf1 | coding | upstream | 286802 | 38535934 ~ 38570940 (-) |
| XLOC_034937 | BX571680.1 | coding | upstream | 290174 | 38539306 ~ 38540433 (-) |
| XLOC_034923 | BX664719.1 | non-coding | downstream | 543279 | 37693838 ~ 37693952 (-) |
| XLOC_034919 | CT030153.1 | non-coding | downstream | 759736 | 37420980 ~ 37477495 (-) |
| XLOC_034918 | NA | non-coding | downstream | 1589948 | 36642632 ~ 36647283 (-) |
| XLOC_034938 | CR318601.1 | non-coding | upstream | 324785 | 38573917 ~ 38577255 (-) |
| XLOC_034942 | BX957297.2 | non-coding | upstream | 400456 | 38649588 ~ 38651305 (-) |
| XLOC_034948 | BX957256.1 | non-coding | upstream | 507194 | 38756326 ~ 38767909 (-) |
