XLOC_034936 (celf1)


Basic Information

Item Value
gene id XLOC_034936
gene name celf1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 38535934 ~ 38570940 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00067930
TTGCACCGTCCCTCTTCCACCCAGAAAGTAGGTTGTCGTGGGAAGACGTAATCAGAGAAAACTACTAACTCACAAATCCCACCACACAATCATTCCCCCGTGTCAGCACAATATACCTACTCAGTTTCCTCCGTTTGAAAAAGGAGGCATCGAGGGTTAACGGAAGCAACGTTTCAGAAAAGCAAGGCTACAGAGAGGAAGCAAGAAGATGAATGGGTCTCTGGACCACCCAGACCAGCCCGACATTGATTCTATAAAGATGTTTGTGGGTCAGATCCCTCGGACGTGGTCAGAGGATCAGCTGCGTGAGCTGTTTGAGCCCTATGGtgcagtttatgaaatcaatgttCTTCGTGACAGGAGTCAGAACCCCCCACAGAGTAAAGGTTGTTGTTTTGTCACATATTACACCCGTAAGTCTGCATTAGAAGCACAAAATGCCCTTCACAACATGAAGATTCTTCCAGGGatgCATCATCCCATACAAATGAAACCTGCAGACAGTGAGAAAAACAATGcggTAGAAGATAGAAAGCTGTTTGTTGGAATGATTTCAAAGAAGTGCAATGAGAACGACATCAGACTCATGTTTTCTCCATATGGTCAAATCGAGGAGTGCCGCATATTGAGAGGTCCAGACGGACTAAGCCGTGGCTGTGCCTTCGTCACATTCACAGCGAGACAGATGGCCCAGTCTGCCATCAAATCCATGCACCAGTCACAGACTATGGAGGGCTGTTCTTCTCCCATCGTGGTGAAGTTTGCAGACACACAGAAGGATAAAGAACAGAAACGCATCGCCCAGCAGCTGCAGCAACAGATGCAACAGCTCAATGCTGCCTCCATGTGGGGAAACCTTACAGGGCTGAACTCACTGGGCCCACAGTACCTTGCACTTTATTTGCAGCTTCTACAGCAGTCTGCTTCCTCTGGAAATGCGCTCAACAATCTCCATCCAATGTCAGGTCTGAATGCCATGCAAAATCTGGCTGCATTAGCAGCAGCAGCGAGTGCTACACAGGCCACACCTACAGGTAGCAGTGCGCTGACCACCTCCAGCTCCCCTCTCAGCGTCCTCACCAGCTCAGGTACGCCCTCCGGACAGCCTGCTCAATCTGCCTGGGATGCCTACAAGGCAGGTTCCTCTCCCACCTCCAGTACTAGTTCTTCTGTGAACCCCATGGCATCTTTAGGTGCTCTTCAGTCTCTTGCTGCGGGCGCTGGAGCAGGTCTCAACATGAGTTCCCTAGCAAGCATGGCTGCTCTAAATGGTGGTCTGGGCAGCGGAGGTCTCTCCAACGGCTCTGGAAGCACTATGGAGGCTCTGACTCAGGCGGCCTATTCTGGGATCCAGCAGTATGCAGCTGCCGCTCTGCCAAGCCTCTACAGTCAGAGTTTACTGTCCCAGCAGAACGTTAGCGCTGCTGGCAGCCAAAAAGAAGGCCCTGAAGGAGCAAACCTGTTCATCTACCATCTGCCACAGGAGTTTGGTGATCAGGATTTGTTGCAGATGTTTATGCCTTTCGGCAACGTCATCTCTGCCAAGGTCTTTATTGACAAACAGACCAACCTTAGCAAGTGTTTTGgctTTGTAAGTTACGACAATCCAGTTTCGTCCCAGGCAGCCATTCAGTCAATGAACGGTTTTCAGATTGGAATGAAGCGGCTGAAGGTGCAACTTAAACGATCTAAAAATGACAGCAAGCCATACTGAGTGATTTTGCTCTCAAATGGACTTGGTTTGAAAATGTTTTTCTGaTATCTTCGTGCCCGTTTGTCATCGTTTGCCTAGCATGTCGATGTGACGTCAAAAGTTCATCGTCCAGTCCGTTGTCCTCTTCGCTTCTCTGACGCTTGAAATTTCACACTTGACCTTTATTTTGTTAACTTTTGACGCTTGTtgattactttttttgtttgttcctttGTGTGATGTTCATTTCTGTCATTTGTGCTGCCAATAGGGGGCGTTAGAAAGACTGCTGGAAGTGTAAAAAGTTTCTTGAAAATTGTTTCCGATAGAGCAAAGAGTCTATTTTTCTAGAACGTTCAAACATAACCACTAGGTTTCTGCCGAAGCTTTTAATTTTTCCGATTCTTATGTTTTTCTTCTCTTTATGGGAGTTTTATTGTTTTCAAGCAGTCTTCCTAGCGCTTCTAATTGTACTCCttttttgagttgtttttttgTCTCTTCTCAAAGCAGCCATTCAGTTTGTAGaatcacttgtgtgtgtgtgttccagcgtGGGTGTGTTTCCCTCTTTCTCTCACTGTTAGTTCTAAACCTTTTAGAGGATGTGTTCGTCACATTTTGCTGAAGTCGAGGATAAACTTTGTAATTTTGTGTTAGGATAGTTGGCATGATGTAATTTTTGGGAGTTTCTATTAACAGAGTGACATTACAATAGACACTTgaattgcctttttttttttctttgtgtgtgtgtgtcgagcCAACACGGGCACATGTTTTTCATTTTCCTTATTGTGTGAAAATCAGGATTAGTCTGAATTAATGCATAGAATGAGCAGAGTTGAATTTCTTGTCACAGGTAAATATTAAGCATGcatgttctttttgtttttgtaagtGCACTGAAATCCTCAGCAAAATGTGATCTAGTTCTGTTTCAAAGTCAAGATGAATAAAGTGGTGCCAAAAGTTTTGCATGTCGCTGTTGGTTACATTTGCAATACGTTTCACGGCTTCTGCTATTATGGTCTCATTTCGATGGATTAAGATTTAAGAACATTACAATGTGCTTAGGCTATGAGTTTTAACGATGTATTCTTGTGAGTCCTTAGATATAAATTGTGCCTACTACAGCAAAACATATGCTCTTAAGATGTTGTTCAGTTAATGATGCTTTGTTATAACCACACCGTTGGTCTGTTTTACACTCGGCTTGCAAGCTTTTGTTTTCCCCCTCCCTGTTTCTTTTTCTCTGTACAAGTTGTGGACTGAATGATAGAGCTCACCTTAACTTTTAATTTGAGGGGCGACCCTCTAATGTCCAACATGAACGAAGAGCTACATTTgggagttttcttgtttttaaaagatgtattCTGACAGACTAATCCAATCGGGGGTTGAGGTGGTTGTTTTCTATTTAGATTTTAAGCTGCTGTTTTGTGAGTTCAAATGTACTCTCTGAGTTCAAACAATTTCCTGTGGGATGTTTGTCATTACTGGTACAGAGTGATTGTATTTAACATTTAAGATTTGTACAGAGTTTGCCTTTTTCTACTTCATAAGTTGTTTCACAGTGTAAATCCCATTAAGTAGAAGCATGTAGACCGTAACGCCATGACCAAACATCAACCTGTACAACTAAAACACAAAGGAAAAAAAGTCTACTCCACAAAGCAGCCTTTAACTGATTTAagatgtttttaagttgttttgtcATTTAAGTTGTGTGGTTTTCATTGCAAGTGTAGAGAGTGCAGAATTTCTTAGATGTCTGAAATCAGTGTGTTGTATAAGGTTGGTTAAGGATTTCGCACTACTGTCTTTTCAGAAATATAGCAAAGTGGGCACCCATGAAGCAGTCATCTGGTAGTTTCTCTTTAGTTTATGTATGATTAAACTGTTTGAAAAGATTCACACATGCCGTGTCTGAATTCATTTCTTTCCTCAATTTAAAAATGCCAGAAATCAAGCCTTTGTTGTGTTAATGTAATCATTAAATAATGTAAGTTT
>TCONS_00067931
CCATTTTGCACCGTCCCTCTTCCACCCAGAAAGTAGGTTGTCGTGGGAAGACGTAATCAGAGAAAACTACTAACTCACAAATCCCACCACACAATCATTCCCCCGTGTCAGCACAATATACCTACTCAGTTTCCTCCGTTTGAAAAAGGAGGCATCGAGGGTTAACGGAAGCAACGTTTCAGAAAAGCAAGGCTACAGAGAGGCATTTGACAAAGGCACTGGATGGATAGTATCGAAGCTGAAGCCCTGTACCTGACCACAGCGCAGCACGGGCAACCTCAATGCGAGCTTTCTCTTCCTGCTGTGGAAGTACCTGCCCTTGGCGGAAGCAAGAAGATGAATGGGTCTCTGGACCACCCAGACCAGCCCGACATTGATTCTATAAAGATGTTTGTGGGTCAGATCCCTCGGACGTGGTCAGAGGATCAGCTGCGTGAGCTGTTTGAGCCCTATGGtgcagtttatgaaatcaatgttCTTCGTGACAGGAGTCAGAACCCCCCACAGAGTAAAGGTTGTTGTTTTGTCACATATTACACCCGTAAGTCTGCATTAGAAGCACAAAATGCCCTTCACAACATGAAGATTCTTCCAGGGatgCATCATCCCATACAAATGAAACCTGCAGACAGTGAGAAAAACAATGcggTAGAAGATAGAAAGCTGTTTGTTGGAATGATTTCAAAGAAGTGCAATGAGAACGACATCAGACTCATGTTTTCTCCATATGGTCAAATCGAGGAGTGCCGCATATTGAGAGGTCCAGACGGACTAAGCCGCTGTGCCTTCGTCACATTCACAGCGAGACAGATGGCCCAGTCTGCCATCAAATCCATGCACCAGTCACAGACTATGGAGGGCTGTTCTTCTCCCATCGTGGTGAAGTTTGCAGACACACAGAAGGATAAAGAACAGAAACGCATCGCCCAGCAGCTGCAGCAACAGATGCAACAGCTCAATGCTGCCTCCATGTGGGGAAACCTTACAGGGCTGAACTCACTGGGCCCACAGTACCTTGCACTTCTACAGCAGTCTGCTTCCTCTGGAAATGCGCTCAACAATCTCCATCCAATGTCAGGTCTGAATGCCATGCAAAATCTGGCTGCATTAGCAGCAGCAGCGAGTGCTACACAGGCCACACCTACAGGTAGCAGTGCGCTGACCACCTCCAGCTCCCCTCTCAGCGTCCTCACCAGCTCAGGTACGCCCTCCGGACAGCCTGCTCAATCTGCCTGGGATGCCTACAAGGCAGGTTCCTCTCCCACCTCCAGTACTAGTTCTTCTGTGAACCCCATGGCATCTTTAGGTGCTCTTCAGTCTCTTGCTGCGGGCGCTGGAGCAGGTCTCAACATGAGTTCCCTAGCAAGCATGGCTGCTCTAAATGGTGGTCTGGGCAGCGGAGGTCTCTCCAACGGCTCTGGAAGCACTATGGAGGCTCTGACTCAGGCGGCCTATTCTGGGATCCAGCAGTATGCAGCTGCCGCTCTGCCAAGCCTCTACAGTCAGAGTTTACTGTCCCAGCAGAACGTTAGCGCTGCTGGCAGCCAAAAAGAAGGCCCTGAAGGAGCAAACCTGTTCATCTACCATCTGCCACAGGAGTTTGGTGATCAGGATTTGTTGCAGATGTTTATGCCTTTCGGCAACGTCATCTCTGCCAAGGTCTTTATTGACAAACAGACCAACCTTAGCAAGTGTTTTGgctTTGTAAGTTACGACAATCCAGTTTCGTCCCAGGCAGCCATTCAGTCAATGAACGGTTTTCAGATTGGAATGAAGCGGCTGAAGGTGCAACTTAAACGATCTAAAAATGACAGCAAGCCATACTGAGTGATTTTGCTCTCAAATGGACTTGGTTTGAAAATGTTTTTCTGaTATCTTCGTGCCCGTTTGTCATCGTTTGCCTAGCATGTCGATGTGACGTCAAAAGTTCATCGTCCAGTCCGTTGTCCTCTTCGCTTCTCTGACGCTTGAAATTTCACACTTGACCTTTATTTTGTTAACTTTTGACGCTTGTtgattactttttttgtttgttcctttGTGTGATGTTCATTTCTGTCATTTGTGCTGCCAATAGGGGGCGTTAGAAAGACTGCTGGAAGTGTAAAAAGTTTCTTGAAAATTGTTTCCGATAGAGCAAAGAGTCTATTTTTCTAGAACGTTCAAACATAACCACTAGGTTTCTGCCGAAGCTTTTAATTTTTCCGATTCTTATGTTTTTCTTCTCTTTATGGGAGTTTTATTGTTTTCAAGCAGTCTTCCTAGCGCTTCTAATTGTACTCCttttttgagttgtttttttgTCTCTTCTCAAAGCAGCCATTCAGTTTGTAGaatcacttgtgtgtgtgtgttccagcgtGGGTGTGTTTCCCTCTTTCTCTCACTGTTAGTTCTAAACCTTTTAGAGGATGTGTTCGTCACATTTTGCTGAAGTCGAGGATAAACTTTGTAATTTTGTGTTAGGATAGTTGGCATGATGTAATTTTTGGGAGTTTCTATTAACAGAGTGACATTACAATAGACACTTgaattgcctttttttttttctttgtgtgtgtgtgtcgagcCAACACGGGCACATGTTTTTCATTTTCCTTATTGTGTGAAAATCAGGATTAGTCTGAATTAATGCATAGAATGAGCAGAGTTGAATTTCTTGTCACAGGTAAATATTAAGCATGcatgttctttttgtttttgtaagtGCACTGAAATCCTCAGCAAAATGTGATCTAGTTCTGTTTCAAAGTCAAGATGAATAAAGTGGTGCCAAAA
>TCONS_00067933
AAAACTACTAACTCACAAATCCCACCACACAATCATTCCCCCGTGTCAGCACAATATACCTACTCAGTTTCCTCCGTTTGAAAAAGGAGGCATCGAGGGTTAACGGAAGCAACGTTTCAGAAAAGCAAGGCTACAGAGAGGatgCATCATCCCATACAAATGAAACCTGCAGACAGTGAGAAAAACAATGcggTAGAAGATAGAAAGCTGTTTGTTGGAATGATTTCAAAGAAGTGCAATGAGAACGACATCAGACTCATGTTTTCTCCATATGGTCAAATCGAGGAGTGCCGCATATTGAGAGGTCCAGACGGACTAAGCCGTGGCTGTGCCTTCGTCACATTCACAGCGAGACAGATGGCCCAGTCTGCCATCAAATCCATGCACCAGTCACAGACTATGGAGGGCTGTTCTTCTCCCATCGTGGTGAAGTTTGCAGACACACAGAAGGATAAAGAACAGAAACGCATCGCCCAGCAGCTGCAGCAACAGATGCAACAGCTCAATGCTGCCTCCATGTGGGGAAACCTTACAGGGCTGAACTCACTGGGCCCACAGTACCTTGCACTTCTACAGCAGTCTGCTTCCTCTGGAAATGCGCTCAACAATCTCCATCCAATGTCAGGTCTGAATGCCATGCAAAATCTGGCTGCATTAGCAGCAGCAGCGAGTGCTACACAGGCCACACCTACAGGTAGCAGTGCGCTGACCACCTCCAGCTCCCCTCTCAGCGTCCTCACCAGCTCAGCAGGTTCCTCTCCCACCTCCAGTACTAGTTCTTCTGTGAACCCCATGGCATCTTTAGGTGCTCTTCAGTCTCTTGCTGC
>TCONS_00067934
GTTACCTTTTTTTGCCCAGCGAGTATGTAACTTGGTGTTTCCCgttttaaaatgctctgtatGCTAGTAACTTGCAGCTGTGTGGCATATCGATTAAAAGGAGGCATCGATCCTTGCAAAAGTTAGTGTAGCGACTCTCGAGTCTGCTGCGAAAAGAAGCGCCTCTTCCTGATACAGATTTTCgagcttttaaaataaacaacTCGTTTCTAGTTAAGGTTAACGGAAGCAACGTTTCAGAAAAGCAAGGCTACAGAGAGGAAGCAAGAAGATGAATGGGTCTCTGGACCACCCAGACCAGCCCGACATTGATTCTATAAAGATGTTTGTGGGTCAGATCCCTCGGACGTGGTCAGAGGATCAGCTGCGTGAGCTGTTTGAGCCCTATGGtgcagtttatgaaatcaatgttCTTCGTGACAGGAGTCAGAACCCCCCACAGAGTAAAGGTTGTTGTTTTGTCACATATTACACCCGTAAGTCTGCATTAGAAGCACAAAATGCCCTTCACAACATGAAGATTCTTCCAGGGatgCATCATCCCATACAAATGAAACCTGCAGACAGTGAGAAAAACAATGcggTAGAAGATAGAAAGCTGTTTGTTGGAATGATTTCAAAGAAGTGCAATGAGAACGACATCAGACTCATGTTTTCTCCATATGGTCAAATCGAGGAGTGCCGCATATTGAGAGGTCCAGACGGACTAAGCCGTGGCTGTGCCTTCGTCACATTCACAGCGAGACAGATGGCCCAGTCTGCCATCAAATCCATGCACC

Function

symbol description
celf1 Enables mRNA 3'-UTR binding activity. Involved in several processes, including developmental cell growth; liver development; and pancreas morphogenesis. Acts upstream of or within several processes, including embryonic liver development; endodermal digestive tract morphogenesis; and positive regulation of mRNA catabolic process. Located in pole plasm. Is expressed in several structures, including eye; gonad; lens placode; pectoral fin; and solid lens vesicle. Orthologous to human CELF1 (CUGBP Elav-like family member 1).

GO:

id name namespace
GO:0006376 mRNA splice site selection biological_process
GO:1990402 embryonic liver development biological_process
GO:0016477 cell migration biological_process
GO:0000381 regulation of alternative mRNA splicing, via spliceosome biological_process
GO:0031016 pancreas development biological_process
GO:0006397 mRNA processing biological_process
GO:0070306 lens fiber cell differentiation biological_process
GO:0048565 digestive tract development biological_process
GO:0048588 developmental cell growth biological_process
GO:0061014 positive regulation of mRNA catabolic process biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0061031 endodermal digestive tract morphogenesis biological_process
GO:0001889 liver development biological_process
GO:0008380 RNA splicing biological_process
GO:0061113 pancreas morphogenesis biological_process
GO:1990904 ribonucleoprotein complex cellular_component
GO:0045495 pole plasm cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003729 mRNA binding molecular_function
GO:0003730 mRNA 3'-UTR binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-000501-1 Enables mRNA 3'-UTR binding activity. Involved in several processes, including developmental cell growth; liver development; and pancreas morphogenesis. Acts upstream of or within several processes, including embryonic liver development; endodermal digestive tract morphogenesis; and positive regulation of mRNA catabolic process. Located in pole plasm. Is expressed in several structures, including eye; gonad; lens placode; pectoral fin; and solid lens vesicle. Orthologous to human CELF1 (CUGBP Elav-like family member 1).

Ensembl:

ensembl_id ENSDARG00000005315

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00067930 False 3709 mRNA 0.43 15 38535934 38570935
TCONS_00067931 False 2778 mRNA 0.46 16 38536978 38570940
TCONS_00067933 False 827 mRNA 0.50 9 38546041 38570878
TCONS_00067934 True 779 mRNA 0.45 7 38551356 38570299

Neighbor

gene id symbol gene type direction distance location
XLOC_034935 zgc:165481 coding downstream 58699 38456426 ~ 38477235 (-)
XLOC_034934 BX323855.2 coding downstream 140866 38357915 ~ 38395068 (-)
XLOC_034933 slc7a10a coding downstream 195260 38315647 ~ 38340674 (-)
XLOC_034931 NA coding downstream 278074 38202545 ~ 38257860 (-)
XLOC_034932 NA coding downstream 286802 38237231 ~ 38249132 (-)
XLOC_034938 CR318601.1 coding upstream 2977 38573917 ~ 38577255 (-)
XLOC_034939 c1qtnf4 coding upstream 29210 38600150 ~ 38634845 (-)
XLOC_034940 c6ast4 coding upstream 64598 38635538 ~ 38638809 (-)
XLOC_034941 c6ast3 coding upstream 71174 38642114 ~ 38644560 (-)
XLOC_034942 BX957297.2 coding upstream 78648 38649588 ~ 38651305 (-)
XLOC_034929 NA non-coding downstream 393888 38140666 ~ 38142046 (-)
XLOC_034927 BX323060.3 non-coding downstream 496888 38036841 ~ 38039046 (-)
XLOC_034948 BX957256.1 non-coding upstream 185386 38756326 ~ 38767909 (-)
XLOC_034952 CR382325.1 non-coding upstream 407062 38978002 ~ 38980678 (-)
XLOC_034953 CR356225.1 non-coding upstream 565710 39136650 ~ 39136774 (-)

Expression


Co-expression Network