XLOC_034940 (c6ast4)


Basic Information

Item Value
gene id XLOC_034940
gene name c6ast4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 38635538 ~ 38638809 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00067948
ATTGGCTTTAGAAATCTACGACAGAACTGGTCTTTGGACACCATGGTTGCAATGAAGGTGACTTTCGGCCTGTTGGCCCTGATGCTGGTCTCCTCTGTTAGAGCTGAGGAGATGATGCAGCCTGCTGCTGTGGATGAGTCTGCTGAGCTGTCTGTGTCTGAACTGCTGCATAGAGCCAACAGAGGCATCATTCCTGAAGCTGATGAGCCCAAGCTTCTGGATGACATTGCTGTGAATGAGAGAAACGCTGATCCCTGCACCTCTTACAGCTGTCTCTGGCCCAAATACAGTGACGGCAAGATTTATGTGCCTTACGTCATCGCCAACCACTACTCCTCCCGTGAGCTGGAGATCATCCAGCGCGGTCTGGACTCTTTTGCTTCTGTCTCTTGTATCCGCTTCTTCCGCCGCAGCAATGAAAGAGACTACATCAGCATTGAGTCTCGCAGCGGGTGCTACTCTTACGTTGGCCGTCAGGGTAATGTCCAGACAGTATCTCTGGCCCGAAGTGGCTGTCTTTACCACAGCACTGTTCAGCATGAGCTGCTCCACGCCCTGGGCTTCAACCATGAACAAACCCGCAGTGACCGTGACAATCACATCCAGGTCATCTGGGAGAACATCCTTGATGACATGAAGTACAACTTCAATAAAATCAACACCCTGAACCAGGGAACTCCTTATGACTACAAGTCTGTGATGCAGTACGAGAGGTATGCTTTCTCCAAGAACGGATATCCCACTATGATTCCCATTCCCAACAATAACGCTGAGCTGGGCAAGTCCACTCAGATGAGCCAGAATGACATCACCAGGCTTAACAGACTCTACCAGTGCTGAGCAGCACAAATTTAAAAGGATCCAAAGTCTCACTGATGTTGCTGAACAACCATCAGTCTATCAGATGGATTAAGCACAAAACATCAATAAATTCTTTAAACCAGAATAA
>TCONS_00067949
GTCTTTGGACACCATGGTTGCAATGAAGGTGACTTTCGGCCTGTTGGCCCTGATGCTGGTCTCCTCTGTTAGAGCTGAGGAGATGCTGCTGTGGATGAGTCTGCTGAGCTGTCTGTGTCTGAACTGCTGCATAGAGCCAACAGAGGCATCATTCCTGAAGCTGATGAGCCCAAGCTTCTGGATGACATTGCTGTGAATGAGAGAAACGCTGATCCCTGCACCTCTTACAGCTGTCTCTGGCCCAAATACAGTGACGGCAAGATTTATGTGCCTTACGTCATCGCCAACCACTACTCCTCCCGTGAGCTGGAGATCATCCAGCGCGGTCTGGACTCTTTTGCTTCTGTCTCTTGTATCCGCTTCTTCCGCCGCAGCAATGAAAGAGACTACATCAGCATTGAGTCTCGCAGCGGGTGCTACTCTTACGTTGGCCGTCAGGGTAATGTCCAGACAGTATCTCTGGCCCGAAGTGGCTGTCTTTACCACAGCACTGTTCAGCATGAGCTGCTCCACGCCCTGGGCTTCAACCATGAACAAACCCGCAGTGACCGTGACAATCACATCCAGGTCATCTGGGAGAACATCCTTGATGACATGAAGTACAACTTCAATAAAATCAACACCCTGAACCAGGGAACTCCTTATGACTACAAGTCTGTGATGCAGTACGAGAGGTATGCTTTCTCCAAGAACGGATATCCCACTATGATTCCCATTCCCAACAATAACGCTGAGCTGGGCAAGTCCACTCAGATGAGCCAGAATGACATCACCAGGCTTAACAGACTCTACCAGTGCTGAGCAG
>TCONS_00067950
ATGGTTGCAATGAAGGTGACTTTCGGCCTGTTGGCCCTGATGCTGGTCTCCTCTGTTAGAGCTGAGGAGATGATGCAGCCTGCTGCTGTGGATGAGTCTGCTGAGCTGTCTGTGTCTGAACTGCTGCATAGAGCCAACAGAGGCATCATTCCTGAAGCTGATGAGCCCAAGCTTCTGGATGACATTGCTGTGAATGAGAGAAACGCTGATCCCTGCACCTCTTACAGCTGTCTCTGGCCCAAATACAGTGACGGCAAGATTTATGTGCCTTACGTCATCGCCAACCACTACTCCTCCCGTGAGCTGGAGATCATCCAGCGCGGTCTGGACTCTTTTGCTTCTGTCTCTTGTATCCGCTTCTTCCGCCGCAGCAATGAAAGAGACTACATCAGCATTGAGTCTCGCAGCGGGTGCTACTCTTACGTTGGCCGTCAGGGTAATGTCCAGACAGTATCTCTGGCCCGAAGTGGCTGTCTTTACCACAGCACTGTTCAGCATGAGCTGCTCCACGCCCTGGGCTTCAACCATGAACAAACCCGCAGTGACCGTGACAATCACATCCAGGTCATCTGGGAGAACATCCTTGATGACATGAAGTACAACTTCAATAAAATCAACACCCTGAACCAGGGAACTCCTTATGACTACAAGTCTGTGATGCAGTACGAGAGGTATGCTTTCTCCAAGAACGGATATCCCACTATGATTCCCATTCCCAACAATAACGCTGAGCTGGGCAAGTCCACTCAGATGAGCCAGAATGACATCACCAGGCTTAACAGACTCTACCAGTGC
>TCONS_00067951
AATCTACGACAGAACTGGTCTTTGGACACCATGGTTGCAATGAAGGTGACTTTCGGCCTGTTGGCCCTGATGCTGGTCTCCTCTGTTAGAGCTGAGGAGATGgtaagacacatacacacacaacaccaGTACGCTGAatgatatatacaaatatattgcTTTAAATTACTGCTGAAAGAAGAATGAAATATGATGACCgttttcccagtattgggttgtggctggaagggcatccactgtgtaaaacatatgccggtgtagttggcggttcattccgctgtggcgacccctgataaataagggactaagctaaaggaaaatgaatgaatgaatgaatgaatgaatgaatgaatgaatgagtctgaCCTTGTCACTTTCTTTTCCATGTCCATTTTGTGTCTGGTGTTTTGGCATAATTCTGATGCAGCCTGGTAAGTAACGCTTCAGCAGCTCTTATTGCGCATATGACAGTTTTGGGATGAAACAGTTCAGTTCTGACAGCTGCTGCATGTTGGATTGATTGAAGTAATGGATCATTTGAACATGttaatgtgtttttataataGCTGCTGTGGATGAGTCTGCTGAGCTGTCTGTGTCTGAACTGCTGCATAGAGCCAACAGAGGCATCATTCCTGAAGCTGATGAGCCCAAGCTTCTGGATGACATTGCTGTGAATGAGAGAAACGCTGATCCCTGCACCTCTTACAGCTGTCTCTGGCCCAAATACAGTGACGGCAAGATTTATGTGCCTTACGTCATCGCCAACCACTACTCCTCCCGTGAGCTGGAGATCATCCAGCGCGGTCTGGACTCTTTTGCTTCTGTCTCT

Function

symbol description
c6ast4 Predicted to enable metalloendopeptidase activity. Predicted to act upstream of or within proteolysis.

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0046872 metal ion binding molecular_function
GO:0004222 metalloendopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008237 metallopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050626-100 Predicted to enable metalloendopeptidase activity. Predicted to act upstream of or within proteolysis.

Ensembl:

ensembl_id ENSDARG00000052578

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00067948 False 949 mRNA 0.49 10 38635538 38638809
TCONS_00067949 False 805 nonsense_mediated_decay 0.51 8 38635643 38638289
TCONS_00067950 False 795 mRNA 0.51 8 38635816 38638276
TCONS_00067951 True 832 lncRNA 0.45 4 38637207 38638797

Neighbor

gene id symbol gene type direction distance location
XLOC_034939 c1qtnf4 coding downstream 693 38600150 ~ 38634845 (-)
XLOC_034938 CR318601.1 coding downstream 58283 38573917 ~ 38577255 (-)
XLOC_034936 celf1 coding downstream 64598 38535934 ~ 38570940 (-)
XLOC_034937 BX571680.1 coding downstream 95105 38539306 ~ 38540433 (-)
XLOC_034935 zgc:165481 coding downstream 158303 38456426 ~ 38477235 (-)
XLOC_034941 c6ast3 coding upstream 3305 38642114 ~ 38644560 (-)
XLOC_034942 BX957297.2 coding upstream 10779 38649588 ~ 38651305 (-)
XLOC_034943 npsn coding upstream 14672 38653481 ~ 38659477 (-)
XLOC_034944 c6ast1 coding upstream 22298 38661107 ~ 38664969 (-)
XLOC_034945 aplnr2 coding upstream 46736 38685545 ~ 38689562 (-)
XLOC_034934 BX323855.2 non-coding downstream 240470 38357915 ~ 38395068 (-)
XLOC_034931 NA non-coding downstream 377678 38202545 ~ 38257860 (-)
XLOC_034948 BX957256.1 non-coding upstream 117517 38756326 ~ 38767909 (-)
XLOC_034952 CR382325.1 non-coding upstream 339193 38978002 ~ 38980678 (-)
XLOC_034953 CR356225.1 non-coding upstream 497841 39136650 ~ 39136774 (-)
XLOC_034955 CABZ01033553.1 non-coding upstream 596186 39234995 ~ 39235112 (-)

Expression


Co-expression Network