XLOC_034935 (zgc:165481)


Basic Information

Item Value
gene id XLOC_034935
gene name zgc:165481
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 38456426 ~ 38477235 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00067929
ACAGAgcaggaaaggaggagaaagggagagtgtgtgtgtgtgtgtctgtgagtgagagagaggcaGAGGATCACCTCTTCTGCTGCAGAGCTCCGTGCAGTTGCTCCTGTCTGTCTCTGAGTTGGTTCTGCAGGTGCCGGATCTCTCGTTGATAACTCGCCGATTTCCCCGCAAAGTCCTCCTCCTGCTCGCGGAGACGCCGACCCAGCGCACATACACTTGCTGATGCCTGCTTCTTGTACACCTAGAGCAGCCGTGAGAGAGATATGAAAACAGTTGAACTGGAGAGCTCTGAGGAACGTTGGAGTATCACTTAAACTAATCAAAGGACAACAAAATAACTCAAACAACCCTGGAGGAGCCGGAGACAGAGACCACAGAGCACGAGCATGAGGCCACGATGAGCTGTGCTCAGGCTGGACCAGAGGAGAGCTCCACTAATGCCAGCAATACTAATAACACCAGCCTCAACTGCACCACCAATGATGAGTTGGAGTGCAAAATCTGCTACCAGCGCTTCAATACACACAGCCGCAAGCCCAAAATTTTGGACTGCCTACACCGAGTGTGTGCCAGATGCCTCAACAAGATTCTGGACATGGGGGATGGTTCCAGTTCCATCAGCTGCCCTTTCTGTCGTCACGAGACGCAGGTCAGTGAGTTTGAAGTGGCTGGGCTGCCAGATGACTCAAACATCATGTCCCGCCTGGCTGTGCGGGACAAGTCCTGGAGCTCGGACCACAGTAAAGAAGTAGTGTTGACGCCTAAGAGCCTGTCCTCCAATGACAGCCCATCCCACGACTCCTCCAACTGCCTGGTCATCACAATCATGGAGGTGCAACGAGACCAGCAGCGATCACCCAGCCAAAACGCCAGCTCTGATTACTACGGTGACCTGGACTCAGTCTCTGTAGCATCCAATAGTGGTGTGGTGGACCAAGACGCACTGTCCAAGTTCTGCAATCATGTGCCACGGGTCTTGGTGTGGCTGCTGGGTTTTTTCTACTTCGGTTCGCTGCCACTTGGCATATACTTGCTGGTGATCCAGAGAGTGACCTTGGGGATTGTGTGCGTGAGCCTGGTGCCATCCAGTCTCACAGTCTGTCTGGTTTACGGCTTCTGCCAGTGTCTGTGCCAGGGCATGTGCGACTGCTCCAGCAGGGCGTGACTGGAACAATCATGGCCAGTGAAAACTATAGCTTACATCATTTCACCACGCAGAGCAGAGATAAATAAGCTATAGGCATCTGAATCTCCTTGCTGCAAATTAAATGCAATGTGCACCATCTTGCTTTGAAAGGATGTGTACGAGCAGCTGTAAAAAGAGGATGGGTCAAGCATAAAAAGTGAAGGTCCATCTGGAGCAAACACTACTAGCTTAAAGTTTTTGCACACATCCTTTAAGCTCATTCTGAAGTAAAAATCTGGCCTTAGAGAAGTTCTCCATGAAGGTCAAATGATGATCCACAATTGGGAGATTAGCAGATGGACTATTATGTACAGCCAGGCAGAGTGGATGGGCCAAGAATAAACTTTTATGTTGGTTGATTATTATCTCTGTGAAATAAACCATGCGTACTGATTCTCTTTAACAAGAATCCATGAGTAGCACTGTTTCAGGTGAAGCCTGAATTCGTCTGTGTGGTAAAAAGGCATTGACTATACAGTAGGTATTGCAAACACAAAGGAATGGGTTACCGCTGAGGTAAGAGGTGGGcctttaaataaaaagatttgaCCCAT

Function

symbol description
zgc:165481 Predicted to enable metal ion binding activity and transferase activity. Predicted to be involved in protein ubiquitination. Predicted to be located in cytoplasm and membrane. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0046872 metal ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070615-21 Predicted to enable metal ion binding activity and transferase activity. Predicted to be involved in protein ubiquitination. Predicted to be located in cytoplasm and membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000060092

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00067929 True 1743 mRNA 0.49 2 38456426 38477235

Neighbor

gene id symbol gene type direction distance location
XLOC_034934 BX323855.2 coding downstream 61358 38357915 ~ 38395068 (-)
XLOC_034933 slc7a10a coding downstream 115752 38315647 ~ 38340674 (-)
XLOC_034931 NA coding downstream 198566 38202545 ~ 38257860 (-)
XLOC_034932 NA coding downstream 207294 38237231 ~ 38249132 (-)
XLOC_034930 abcc12 coding downstream 273095 38158604 ~ 38183331 (-)
XLOC_034936 celf1 coding upstream 58699 38535934 ~ 38570940 (-)
XLOC_034937 BX571680.1 coding upstream 62071 38539306 ~ 38540433 (-)
XLOC_034938 CR318601.1 coding upstream 96682 38573917 ~ 38577255 (-)
XLOC_034939 c1qtnf4 coding upstream 122915 38600150 ~ 38634845 (-)
XLOC_034940 c6ast4 coding upstream 158303 38635538 ~ 38638809 (-)
XLOC_034929 NA non-coding downstream 314380 38140666 ~ 38142046 (-)
XLOC_034927 BX323060.3 non-coding downstream 417380 38036841 ~ 38039046 (-)
XLOC_034942 BX957297.2 non-coding upstream 172353 38649588 ~ 38651305 (-)
XLOC_034948 BX957256.1 non-coding upstream 279091 38756326 ~ 38767909 (-)
XLOC_034952 CR382325.1 non-coding upstream 500767 38978002 ~ 38980678 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000026_10599580_10600367 NA coding CI01000026 null 10599203 ~ 10600367 (-)