RNA id: TCONS_00067945


Basic Information

Item Value
RNA id TCONS_00067945
length 3297
RNA type mRNA
GC content 0.41
exon number 2
gene id XLOC_034939
representative False

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 38600150 ~ 38634845 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGGAAATTGATCTATCTATGCTGACCTTTGCCCTCACAGCCTGATCTGATCGAGAAATCATCTGGACGTTCGCTTCAGGAGAGAAGTGGCTTGTACAACTGCATCTGTCAATCAGAAAAGAATCGTAGGAGTTACAATGCTGCCTGGTGCCAGGCCCCTGCTGCTGTGTGTGCTGAGTCATATGACTAGCGCATGGGCATTCTCCCGGATGTCGGACGCCGTGGAGCTGCGGTCTGCATTCTCGGTGGCACGTACCAGCAGCATGGAGGGAGGCCCGAAAATGGTCGTCACTTTCGACAAAGTGTACGTCAACATCGGCAGTGACTTTGATCCAAAGTCTGGCTTGTTCCGCTGCAGGATTCCAGGTGCCTACTATTTCTCCTTCACAGTGGGTAAGTTCCCCCGGCGAGACCTGTCGGTCATGCTAATGAAGAACCGCAATGAGGTTCAGGCGATCGTGTATGACGAGAACGCTGGAGAAGAGCGGAAAGTGCAGAGCCAGAGCGCCATGCTGCAGCTTGATTTTGGTGACACGGTCTGGCTTCGTCTTCATGGAGACCCTCGATACGCCATCTACAGCAACACGGGCCACTACACCACCTTCAACGGTTACCTGATCTACCCTGATGTGTATGGCTACCAAgagcacacacacaaagaacacGACAGTGCACACCAGCCCCCGAAAATCACTGATCACTTGCCATCTGAGCAAGAAAATACAATTACCAAAGACACTGCTGTGCGTATGAAGGAGGAGAGACGGGACGAGGAGGTAAAAGAGGAGGACAGCAGAGATGGAGAGGAGGAAGACGATGACCAAAGGTCAGCATTTTCAGTGGGCCGCACGCAAAGCATTGTAGGTGTGGATCAAGGACACCCTGAGCACCAGCCCATCATCTTTGACACAGAGTTCGTCAACATCGGCAACGACTTCAACTTGAGCTCGGGTGTTTTCAAATGCAGAGTAGCGGGGGCCTATTACTTCTCCTTCAATGCTGGCAAGCTGCCCCATAAGACCCTGTCAGTGAAGCTGATGAAGAATCATTTGGAGGTACAGACCATGATCTACGATGACAGTGACACTGAGAAGGCCCTGCAGAGCCAGAGTCTGATGTTGTCTCTgcaagatggagacactgtgtgGCTTTACAGCCACCAGAGGGATGGGTTTGGGGCTTACAGTAATCACGCCAAGTATATCACTTTCACTGGCTTCCTGGTGTATCCTGAGCTGCACCTCAGCCTTCCTCAGCCGCAGAAACAGGATAAGACACTGTAGGCCTGTCAGGGAGACAGTCTGTCTGTGGGTCTGGAAGAAGGGCAAGAGTTTGGAGGAGAATTTATGTGGAAAAATTTGGAGTTCCCTATATGTAATCTTCTATGCTCTAGAAAATCATCACTCCCTTCATTTGCTTTTTATGATTCATTATTACACAATTTCTCCTGCTCGTCCCATGTGTAAACAAAATGTCTGATTTTGGAAcattttcatgtaaaaaaaaaagagagagaaaaaggtgATCAAATAATCACGTTTTATATTTTACATCAAAATTTCGCAAAACCCCAAAAATGTTTCACATGTGATTGAACACTTTTACCCAGTTCATCTGCTTTACGAGGAATTATACAACCAAGAAATAACCTGAAATAACAAAGCCTCTTCTTGGCATCTTTAAAGTTGCAATGAAACAGAGAATGTGAACATTTTTTTCTCTGTTGTGATCAGTGAGATGGCTCTATGATACGATCTCGGGACTGACAGGCagtgggctctatgcacagctagtgtttttcagccaatgatgaacttccggggaaagctttatgtgactattttcaattttataaggttccCCTATAATGCACCGATGTTGTAGACGAAAAATGAATATATAGATGAAAAACCGTTTAAACACAGGtgccgtcattagcagcaggctagtgaaaaaaaaacctttgaaaatactggggtaaaattaatttccatattttaaagacatggcactgaaaaacagaatttaatgcagtgcttcttgtttggtccaCTTAATATCATATCAGCCAGGCAGTGATGatagctgttttttgtttttaaagaaatcagatctttaaCCCAGCAATTTTGTATAGGATGACAATTAACCAAAAGCATTGTGGCtggctaactgaaattaaaataggTGTGCATATACCCCAATGGATTGTTGTCCAGCTTTCATGATGGAATGCAAGTCAGAAATGTTTTTTGATGAAAGATTATAAGGGCACTTTTAAAATCATGTTCATGAAAAAATCTATTATGATAAAAACTGAAACATTGTGTAAgaatatttgaataattaattatttaacagTTCAATTAAATACAAGATCAATAGTATtcaaaaactaaatctaaaataaaagggTCACAACTCGACTGAACAATCTGAAACTGTTAGCACTGAAGCACCTATCCTGGCAGAGGCGATTCATTTGACAGTTTTTGCTCAAAACAGTTTCTATGATCTCTCAGATTTAATGAAGTTCCTAAATGCATgcatatttcaaatacaaaattgTGTTGTCTTTAAAACCTTTGCACGAAAATTTTGCACGAAAgctcagtttgcttttttctttattttttctgatGTAAAGTGATGATAATAAAAGTGatgacaacatttgctttccagtAAATCATGAGTCATGTAGTcagtcaattaattttttttcctggTTTTGGAACAGCACTACACAGTTAAACTGAGGATTGCTTCTGTAAATTCAATATGTATGGCAAAAAAGTGCCAATGCAAAAATGATTTCATTCACTGCCAAATACATTCACTGTACACCAACTGATGCTCACGATTTTTGAAAACTGttcaacaaatattatttatattttggaaaaaaagaaagTCTATTAAAGTTATCGATAAGTTTATATAACTCTTCTGGTTTGTGCTGTTGTGTCTACTGTAAATGGCCAAAAAGATTTATTTAGGTGAAGCATATTTATGAAGTGCACAATTCCAACATGTAAAtacttgtgtttttattttttatccatttctataTAAGTGAATGTTTGCATTTCTAATCCTGTGCCTGGTCTTATGTACTTTTTTCTGTATGGATTTATTCCAGTCAATAAACTTTGTGAAAGAAAGCTGAATAAGCTTTTCAATGTTTGTGCAGTATGAGCTACTTTAAGTACCGTAAAAGTGGTTTGAGTGTGAGCTGGATTCATATTGTGAAAGAATCCAGTCCCAGGAAGCAAACCAAATAAAAGCTCTGAATGT

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-050417-198 Is expressed in brain. Orthologous to human C1QTNF4 (C1q and TNF related 4).

Ensembl:

ensembl_id ENSDART00000137424

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00067944 lncRNA downstream 22895 38574923 ~ 38577255 (-) True XLOC_034938
TCONS_00067936 lncRNA downstream 22946 38573931 ~ 38577204 (-) False XLOC_034938
TCONS_00067942 lncRNA downstream 22993 38574765 ~ 38577157 (-) False XLOC_034938
TCONS_00067941 lncRNA downstream 22993 38574765 ~ 38577157 (-) False XLOC_034938
TCONS_00067938 lncRNA downstream 23003 38574663 ~ 38577147 (-) False XLOC_034938
TCONS_00067951 lncRNA upstream 3340 38637207 ~ 38638797 (-) True XLOC_034940
TCONS_00067955 lncRNA upstream 15721 38649588 ~ 38651305 (-) True XLOC_034942
TCONS_00067957 lncRNA upstream 19926 38653793 ~ 38657203 (-) False XLOC_034943
TCONS_00067967 lncRNA upstream 69733 38703600 ~ 38714562 (-) True XLOC_034947
TCONS_00067968 lncRNA upstream 122459 38756326 ~ 38767909 (-) True XLOC_034948
TCONS_00067931 mRNA downstream 29210 38536978 ~ 38570940 (-) False XLOC_034936
TCONS_00067930 mRNA downstream 29215 38535934 ~ 38570935 (-) False XLOC_034936
TCONS_00067933 mRNA downstream 29272 38546041 ~ 38570878 (-) False XLOC_034936
TCONS_00067934 mRNA downstream 29851 38551356 ~ 38570299 (-) True XLOC_034936
TCONS_00067929 mRNA downstream 122915 38456426 ~ 38477235 (-) True XLOC_034935
TCONS_00067948 mRNA upstream 1671 38635538 ~ 38638809 (-) False XLOC_034940
TCONS_00067950 mRNA upstream 1949 38635816 ~ 38638276 (-) False XLOC_034940
TCONS_00067952 mRNA upstream 8247 38642114 ~ 38644560 (-) False XLOC_034941
TCONS_00067954 mRNA upstream 8589 38642456 ~ 38644287 (-) True XLOC_034941
TCONS_00067956 mRNA upstream 19614 38653481 ~ 38658430 (-) False XLOC_034943
TCONS_00067914 other downstream 906198 37693838 ~ 37693952 (-) True XLOC_034923
TCONS_00067911 other downstream 1036185 37560080 ~ 37563965 (-) True XLOC_034921
TCONS_00067904 other downstream 1924276 36671337 ~ 36675874 (-) False XLOC_034917
TCONS_00067876 other downstream 3621681 34978351 ~ 34978469 (-) True XLOC_034894
TCONS_00067875 other downstream 3756428 34827626 ~ 34843722 (-) True XLOC_034893
TCONS_00067949 other upstream 1776 38635643 ~ 38638289 (-) False XLOC_034940
TCONS_00067953 other upstream 8252 38642119 ~ 38644287 (-) False XLOC_034941
TCONS_00067973 other upstream 170256 38804123 ~ 38807825 (-) False XLOC_034950
TCONS_00067981 other upstream 502783 39136650 ~ 39136774 (-) True XLOC_034953
TCONS_00067983 other upstream 601128 39234995 ~ 39235112 (-) True XLOC_034955

Expression Profile

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