RNA id: TCONS_00067956


Basic Information

Item Value
RNA id TCONS_00067956
length 1385
RNA type mRNA
GC content 0.42
exon number 9
gene id XLOC_034943
representative False

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 38653481 ~ 38659477 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGCTCAGATTGACCCAGTTCATTTTTTCAGAAAGCTGTCATCATGTACCTGTTGGTAGTGGTCATCTCTCTTCTGCTGAGCTCTGGTCCTGTTCAGAGCCGTCCTGTTGAGgatttaattgaaaaaatgtccaagaagactGGTGGTAACTTCACAAAGAAAGGTAATTTGCTAGTCTCATCTGTAATCGAGACCAGCAAACATGCAGGAGAGAACACAGATGGGCCAGTAATCCTGTTTGGAGACATCGCCTTTCCCAGAGGTTTGCAGAATGCAGATCAATGTACAGCTCGTGGCTGCAAATGGGACAGAAGCAGAGATGGATTAGTCTATGTGCCTTACCAGATATCTAGAGCGTACTCTCCACGGGAAGTAGCAGTGATTGAACAAGGCTTGCAATCCTTTTCGGCGGTTTCCTGCATTCGTTTTGTGCCTCATACTGGAGAGAGGAACTATCTCAACATAAAGTCTGAATCTGGCTGCTATTCATATTTAGGGCGGATAGGTGGAGGTCAGGTCGTGTCTCTCCAGCGGCAAGGCTGTGTGTATTTCAGCACCGTCCAGCACGAGCTCCTTCATGCCCTCGGCTTCCACCATGAGCAGAACCGCAGCGACCGAGACAATCACATCCGGATCCTCTATCAGAACATCATACCTGCGCAACAGTACAATTTCAACAAACAAAACACCAACAATCTGGGCACCCCCTATGACTATAACTCTGTGATGCAGTATTCAAGGTATGCTTTCTCCATGAACAATCAGCCAACCATGGTTCCCGTTCCTAATGCAAATGTTGTGTTGGGAGAAGCTCAAAGTATGAGCCCCAATGACATCCTGCGCATCAACAGACTATACTGCAattGAGCAAACTGCTGCCAGGCCGTAAGGAGGACATTTTGTGATGTCAGTTCACagttcatctgttttttttttctagcattcttttttttAGCATCTTTTTTAGCACATCTTTGTATCTCATGGTTTTACTTAAGTCAAGTGCTACATCCTAAAATCAGACACCTCTCAGTTTCCAACAAATCAGAAAAATTAGCATATAGTCTGAACTCTAAAATTATTTGCTACTAAAATGCAACACTCCAGATTGACTGCTTCTGTGACAGGATTGTTGTAAGCTCTTTCCTTTGATTTTTGTTCATCTTTTTGCAGTTGTAACATGGGTGCATAAATAAAACTGTGCTCTTATGTCTTATTATTATCAGTAGGTCATGGATTAAAAGCACTGTTATGTTCACTGGTATTAAGAATTGTTACTGCACAGTGTTGACTGATACTACAAAACAAATAACTGTAATGTTCTCAGTAAACATTGCAATACCACTATTTTTTATGACATAAAACGAAAGCTTGCATCAATTAAA

Function

GO:

id name namespace
GO:0042742 defense response to bacterium biological_process
GO:0006508 proteolysis biological_process
GO:0005575 cellular_component cellular_component
GO:0046872 metal ion binding molecular_function
GO:0004222 metalloendopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008237 metallopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040420-2 Predicted to enable metalloendopeptidase activity. Acts upstream of or within defense response to bacterium. Is expressed in hematopoietic cell and hematopoietic system. Orthologous to human ASTL (astacin like metalloendopeptidase).

Ensembl:

ensembl_id ENSDART00000017155

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00067955 lncRNA downstream 2176 38649588 ~ 38651305 (-) True XLOC_034942
TCONS_00067951 lncRNA downstream 14684 38637207 ~ 38638797 (-) True XLOC_034940
TCONS_00067944 lncRNA downstream 76226 38574923 ~ 38577255 (-) True XLOC_034938
TCONS_00067942 lncRNA downstream 76324 38574765 ~ 38577157 (-) False XLOC_034938
TCONS_00067967 lncRNA upstream 45170 38703600 ~ 38714562 (-) True XLOC_034947
TCONS_00067968 lncRNA upstream 97896 38756326 ~ 38767909 (-) True XLOC_034948
TCONS_00067978 lncRNA upstream 171954 38830384 ~ 38835906 (-) False XLOC_034951
TCONS_00067979 lncRNA upstream 193840 38852270 ~ 38861479 (-) True XLOC_034951
TCONS_00067980 lncRNA upstream 319572 38978002 ~ 38980678 (-) True XLOC_034952
TCONS_00067952 mRNA downstream 8921 38642114 ~ 38644560 (-) False XLOC_034941
TCONS_00067954 mRNA downstream 9194 38642456 ~ 38644287 (-) True XLOC_034941
TCONS_00067948 mRNA downstream 14672 38635538 ~ 38638809 (-) False XLOC_034940
TCONS_00067950 mRNA downstream 15205 38635816 ~ 38638276 (-) False XLOC_034940
TCONS_00067946 mRNA downstream 18636 38600150 ~ 38634845 (-) False XLOC_034939
TCONS_00067960 mRNA upstream 2677 38661107 ~ 38664947 (-) False XLOC_034944
TCONS_00067961 mRNA upstream 3374 38661804 ~ 38664969 (-) True XLOC_034944
TCONS_00067962 mRNA upstream 27115 38685545 ~ 38689562 (-) False XLOC_034945
TCONS_00067963 mRNA upstream 27724 38686154 ~ 38687431 (-) True XLOC_034945
TCONS_00067964 mRNA upstream 37289 38695719 ~ 38698664 (-) False XLOC_034946
TCONS_00067953 other downstream 9194 38642119 ~ 38644287 (-) False XLOC_034941
TCONS_00067949 other downstream 15192 38635643 ~ 38638289 (-) False XLOC_034940
TCONS_00067914 other downstream 959529 37693838 ~ 37693952 (-) True XLOC_034923
TCONS_00067911 other downstream 1089516 37560080 ~ 37563965 (-) True XLOC_034921
TCONS_00067904 other downstream 1977607 36671337 ~ 36675874 (-) False XLOC_034917
TCONS_00067973 other upstream 145693 38804123 ~ 38807825 (-) False XLOC_034950
TCONS_00067981 other upstream 478220 39136650 ~ 39136774 (-) True XLOC_034953
TCONS_00067983 other upstream 576565 39234995 ~ 39235112 (-) True XLOC_034955
TCONS_00067999 other upstream 1057282 39715712 ~ 39716073 (-) True XLOC_034962
TCONS_00068010 other upstream 1880140 40538570 ~ 40551054 (-) False XLOC_034968

Expression Profile

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