RNA id: TCONS_00067973


Basic Information

Item Value
RNA id TCONS_00067973
length 848
RNA type nonsense_mediated_decay
GC content 0.44
exon number 8
gene id XLOC_034950
representative False

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 38793832 ~ 38807827 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

caaacaagcaaaataaacaaaaatggagCGCCCGTCAGTTTGTGACGTTGCGGTGCTAATATGTGATTAACTGAGGATACAGGAcagtttaagctgtattttttcttttcacaTAATCAGCTACGGTGTATTGCACCGTTAACGTCATATTCTACGTGTTAACAGTTGAATCTGCACTCTGTGATGAGCTgcTCGTGCGACAATGGATAGTGATCTGAGCCCACAGGACAAGAAAGACTTAGATAAATTCATCAAATTCTTTGCTTTGAAGACAGTGCAGGTTATAGTGCAAGCCCGGCTTGGAGAGAAGATCAGCACTTGCTCGTCTTCATCACCGACAGGTTCGGACTGGTTTAATTTGGCAATAAAGGACATCCCCGAGGTCACTCATGAAGCAAAAAAAGCTCTTGCTGGACAACTGCCTGGCATCGGGCGATCTATGTGTGTGGAGATCTCCCTCAAAACCTCAGAGGTGTGATAAGGACATTAAAGTGTCCTATACAGTTTATAATCGACTGTCTCTGCTGCTCAAGTCTTTACTGGCCATCACAAGGGTGACTCCTGCTTACAAGCTTTCACGTCAACAAGGCCATGATTATGTAATACTCTACAGgaTCTATTTTGGAGATGTGCAACTGACAGGTCTTGGGGAAGGCTTTCAGACAGTGCGAGTGGGTATTGTTGGCACTCCCATTGGCACCATCACTTTGTCTTGTGCATATCGCACTAATTTGGCTCTTGTGTCTTCAAGACAATTTGAGAGAACAGGCCCTATCATGGGTATTATCATTGATCATTTTGTGGAGCGTCCCTTCACTAATATGGCACACACACATCCCTGCAGCTAC

Function

GO:

id name namespace
GO:0006914 autophagy biological_process
GO:0000045 autophagosome assembly biological_process
GO:0034727 piecemeal microautophagy of the nucleus biological_process
GO:0034497 protein localization to phagophore assembly site biological_process
GO:0000422 autophagy of mitochondrion biological_process
GO:0000423 mitophagy biological_process
GO:0032147 activation of protein kinase activity biological_process
GO:0044804 autophagy of nucleus biological_process
GO:0016236 macroautophagy biological_process
GO:0005829 cytosol cellular_component
GO:0000407 phagophore assembly site cellular_component
GO:0019898 extrinsic component of membrane cellular_component
GO:1990316 Atg1/ULK1 kinase complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0019887 protein kinase regulator activity molecular_function
GO:0019901 protein kinase binding molecular_function

KEGG:

id description
ko04140 Autophagy - animal
ko04138 Autophagy - yeast
ko04136 Autophagy - other
ko04211 Longevity regulating pathway
ko05010 Alzheimer disease
ko05014 Amyotrophic lateral sclerosis
ko05016 Huntington disease
ko05017 Spinocerebellar ataxia
ko05022 Pathways of neurodegeneration - multiple diseases
ko04131 Membrane trafficking
ko03029 Mitochondrial biogenesis

ZFIN:

id description
ZDB-GENE-040426-1149 Predicted to be involved in mitophagy; piecemeal microautophagy of the nucleus; and protein localization to phagophore assembly site. Predicted to act upstream of or within autophagosome assembly. Predicted to be located in cytoplasm. Predicted to be part of Atg1/ULK1 kinase complex. Predicted to be active in cytosol and phagophore assembly site. Predicted to be extrinsic component of membrane. Orthologous to human ATG13 (autophagy related 13).

Ensembl:

ensembl_id ENSDART00000173462

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00067968 lncRNA downstream 36214 38756326 ~ 38767909 (-) True XLOC_034948
TCONS_00067967 lncRNA downstream 89561 38703600 ~ 38714562 (-) True XLOC_034947
TCONS_00067957 lncRNA downstream 146920 38653793 ~ 38657203 (-) False XLOC_034943
TCONS_00067955 lncRNA downstream 152818 38649588 ~ 38651305 (-) True XLOC_034942
TCONS_00067951 lncRNA downstream 165326 38637207 ~ 38638797 (-) True XLOC_034940
TCONS_00067978 lncRNA upstream 22559 38830384 ~ 38835906 (-) False XLOC_034951
TCONS_00067979 lncRNA upstream 44445 38852270 ~ 38861479 (-) True XLOC_034951
TCONS_00067980 lncRNA upstream 170177 38978002 ~ 38980678 (-) True XLOC_034952
TCONS_00067985 lncRNA upstream 472593 39280418 ~ 39360325 (-) False XLOC_034956
TCONS_00068689 lncRNA upstream 527347 39335172 ~ 39336854 (-) False XLOC_034956
TCONS_00067969 mRNA downstream 11580 38787831 ~ 38792543 (-) False XLOC_034949
TCONS_00067970 mRNA downstream 13782 38787924 ~ 38790341 (-) True XLOC_034949
TCONS_00067966 mRNA downstream 89579 38703338 ~ 38714544 (-) False XLOC_034947
TCONS_00067964 mRNA downstream 105459 38695719 ~ 38698664 (-) False XLOC_034946
TCONS_00067965 mRNA downstream 105540 38696154 ~ 38698583 (-) True XLOC_034946
TCONS_00067977 mRNA upstream 13613 38821438 ~ 38861741 (-) False XLOC_034951
TCONS_00067976 mRNA upstream 13613 38821438 ~ 38861741 (-) False XLOC_034951
TCONS_00067975 mRNA upstream 13613 38821438 ~ 38861741 (-) False XLOC_034951
TCONS_00067982 mRNA upstream 373051 39180876 ~ 39203799 (-) True XLOC_034954
TCONS_00067984 mRNA upstream 447956 39255781 ~ 39360325 (-) False XLOC_034956
TCONS_00067953 other downstream 159836 38642119 ~ 38644287 (-) False XLOC_034941
TCONS_00067949 other downstream 165834 38635643 ~ 38638289 (-) False XLOC_034940
TCONS_00067914 other downstream 1110171 37693838 ~ 37693952 (-) True XLOC_034923
TCONS_00067911 other downstream 1240158 37560080 ~ 37563965 (-) True XLOC_034921
TCONS_00067904 other downstream 2128249 36671337 ~ 36675874 (-) False XLOC_034917
TCONS_00067981 other upstream 328825 39136650 ~ 39136774 (-) True XLOC_034953
TCONS_00067983 other upstream 427170 39234995 ~ 39235112 (-) True XLOC_034955
TCONS_00067999 other upstream 907887 39715712 ~ 39716073 (-) True XLOC_034962
TCONS_00068010 other upstream 1730745 40538570 ~ 40551054 (-) False XLOC_034968
TCONS_00068023 other upstream 2141050 40948875 ~ 40949190 (-) True XLOC_034975