RNA id: TCONS_00067985


Basic Information

Item Value
RNA id TCONS_00067985
length 3870
lncRNA type sense_over
GC content 0.51
exon number 16
gene id XLOC_034956
representative False

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 39255781 ~ 39360325 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGCTTTGTCTGGACTCGTTTTGGCAggacacacacagcaacaaatcTAAAGTACACACGACCCActtttggggggaaaataaaaacattacaaaaatattccttaaagaaaatctgaaatattgctAAAGTTTCACCTAACGTACTTCCGCTACTACATATCTACAATTTCATGGATTAAAATCGGACAAAAATAAGAGGAAAAGAATGATGACGTGGTAGCAGCAGAGGTAGTCTTTTGTGTTTGGGCCGGTGGACGGCTCTGGGTCTGGTGTGAGAGAGAGGGAGTGAGGAAGAGTGTTTGGAGATGAAGCTGGGACAGAGGAACTCAGTATGTATCCTGTCCAGTCGAGAGCGGGGAGCACCGGGTCTTGCATCATATAGGGTTCTGCAGCAGCTTGTAGAAGAGAAGACACAGCGAATGAAATGGCAAAGTCAGAAAGTAGAGTTACCAGACAGTCCCCGCTCAACCTTTCTGCTAGCCTTTAGTCCGGACAGGTCTTTAATGGCTTCCACACATGTGAACCATAACATCTACATCACTGAGGTTAAATCAGGAAAGTGTGTTCATTCATTGGTGGGCCATCGCAGGACACCCTGGTGTCTAACTTTTCACCCTATCATCCCTGGGCTTATTGCTTCTGGCTGCCTGGACGGAGAGGTCAGAATCTGGGACCTACATGGTGGCAGTGAAAGCTGGCTTACAGAGAGTAACTCCGCAATCGCATCTCTTGCTTTCCACCCCACGGCTCAGCTGCTGCTCATTGCCACCAACAATGAGGTGCATCTGTGGGACTGGAGTCGGAAAGAGCCCTTCACTGTGGTCAAAACTGCCAGTGAGACAGAGAGAGTCAGATTGGTGAGATTTGATCCATTGGGTCACTATCTTCTAACTGCCATTGTAAACCCTTCGAACCAACCGAATGATGATGATCCTGAGATTCCAATGGACAGTGTGGAGATGCCTCATCTCCGACAGCGCTCCTTCCTGCAGTCCCAGCCTGCGAGGCGCACACCCATCTTGCACAATTTCTTGCACATCCTCACTTCCCGCAACTCTGTTCCTCAGGCTGGAGGTGCCCATTCTGCTTCCACTGATGGGTCCTCCGATTCTTCTGGCCCTTACACTCTTATGTGCGTTCAGCCGCTTGGAATGGTGTGTTTTTGTAGCCGTTGCTCTGCAGCACGAGTTCCATCTCCACCTGATGAGGACCCTTCAGACTCGGCATCCCTGGAGGCACAAGCTCACACCTTTTCTTCTGCACGCACAGAGCCACTGCAGATGTCACGGTTTTCTGTTGAGTCTCGTGCTGCAAATCGCTCCTCTGCATTCAGCAGCGTGTATGGTGGAGGCAGCAACATGCGGAATCATTCTTCCAGCTCTGGCAGGAGGGGAGTGACTGGAATGGCACCTGTCCCGCATTTCCGACAACATCCACCAGGTAGGGAAGGTGGAGGACGTCACCCTGGAGCAGACTGGACAGTCAGTGGACTTAATGGACAAAGCAGTAGTATGACTCCACAAAGAACTGGCGCTTCCTCTGTTAGCCTTCTTTCTGTCCTGCGACAGCAAGAGACTTCCTTTCAATCACCTGTTTACACTTCTGCTAGTGATAGATGGGGCAGCACACCGGGAACTAGTTCCAGCAGGCACCGTCCTCCAGAAGAAGAGGGACAGAGCAGCTCCTCTTCCATCCACAGTGTCCTGCGTTGTAACCTTTACCGCTATTTTATGGATTATGAGGGAACGCAGGACACGGTCCAGCCTCTTGATGGCAGCAGACAGGACCAGCAGACTCAGGAAATGCTCAACAACAACATGGACCCAGAGCAACCAGGACCATCTCATTACCAGTCACCCTATAGCGGTGAAAACCCTCCCCACAGTCACATGAACCGCTGTAGAGTATGCCACAATCTTTTCACCTACAATCAGGGTAGCCGGCGCTGGGACAGAACAGGTCAGCCTTCATCTACTGAGAGAAACACACCATGGCAACCTTCTAGTTCTGCCTTCCACAGCGTAGCTCCAGTTTCACAATCTAATGAACACCTACTGGAACACAGACCCATAGAGTCCACACCAAATACCCCAGAGCCTCATGTACCATTTTCCCAGAGAACTGACACTGGTCAGCATGAGGAGCAGGCCGTTGGGCTTGTCTTTAACCAGGAAACTGGCCAACTGGAGCGTGTTTACAGACAGTCTGCCTCCTCTCGCTCTGCAAACATATCACAAGGAGCCTTAAACCAGGAAATGCCTGAAGACACACCAGATAACGATTACTTGCGCAGGTTGTCCCCTGCAGCATATTATGCACAGCGTATGATCCAGTATCTGTCTCGACGGGACAGCGTTCGGCAGCACTCCCACCGTCCCCCTAGCAGACCTCGACCCCTGTCCTCTAATCCCAGCAGTCTTTCCCCGAGCCCTGTCCCTAACGCAGAGAGCAGCGAAGTTGACTTTGAGGAGTTTGAggaAAATGGAAGCAGATATCGGACTCCTCGTAATGCTCGCATGTCTGCCCCCTCTCTTGGTCGTTTTGTTGGAACCAGGCGCTTTCTCTTGCCGGAGTTTTTGCCGTATGCTGGAATCTTCCATGAGCGAGGGCAGCCAGGCCTGGCAACGCACTCATCCGTCAATAGGGTCCTCGCAGGTGCTGTAATTGGAGACGGTCAATCTGCAGTGGCCAGCAACATCGCTAACACTACCTATCGTCTGCAGTGGTGGGacttcaccaaatttgacttgCCTGAAATCAGTAATGcGTCGGTGAACGTTCTGGTGCCTAACTGTAAGATCTACAACGATGCGAGCTGTGATATCTCAGCGGATGGGCAGTTGCTGGCCGTATTCATTCCCAGCAGTCAGAGGGGTTTCCCTGATGAGGGCATTCTGGCTGTTTACTCTCTCGCTCCGCACAACCTGGGAGAGATGCTCTACTCCAAAAGATTCGGTCCAAATGCCATCTCTGTCAGTTTGTCTCCGATGGGTCGTTACGTGATGGTGGGTCTGGCGTCTCGCCGCATCCTGCTGCATCAGATCAGCGATCACATGGTGGCACAGGTCTTCAGACTGCAGCAGCCTCACGCAGGAGAGACGTCCATGAGGAGGGTGTTTGATGTGGTGTACCCAATGGCACCAGACCAGAGGAGACACGTCAGTATAAACTCTGCCCGCTGGCTGCCAGATCCGGGGCTTGGGCTCGCTTATGGGACCAACAAAGGAGATCTTGTCATCTGCAGACCTGTCGATGTGCATTCTGATGGCAGCAGCACCTCTGAACACTCTGAGCGAATGTTCACCATCAATAATGGTGGAGGGGTTGGACCCAGTAGCAGCAGGAGTGGAGACAGGGCAGGGAGCAGCAGGACTGATCGACGGTCACGCAGAGACATAGGCCTGATGAATGGAGTTGGTCTGCAGCCACAACCTCCCGCCGCTAGTGTTACATCACAGGGGACGCAGACACAGAACCAGCGACTACAGCATGCAGAGACACAGACCGACCGCGATCTTCCAGATGACCCCCAGCAGCCCAGCACTTCTCAGGGGTCACAGGTCACTGATGGTAAGACACTCTCTGTGAATCAGATTTTATGAATGAGCTTGGGTGAGTGAAGTCCATCTGTGATTAAATTTACACTTCATTGTTCTAAATTATTGTCTCTTTCTGAATGCAAAAATATGCAGCAATTTAAGTACATTTGCTATACTCTGTATGCAGATTCCAGCTGTAATGTTTATATTGTATATACCCTAAACCATGTCATCTTATTATGATATCTGTTTACATGTACATTTTGTGCAAGAAATATATTTTAGTGTCAGTGTTTCCATAGCAACAAGCTGGTGTCTGTGCTtctgtca

Function

GO:

id name namespace
GO:0048741 skeletal muscle fiber development biological_process
GO:0043009 chordate embryonic development biological_process
GO:0007626 locomotory behavior biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00067980 lncRNA downstream 299740 38978002 ~ 38980678 (-) True XLOC_034952
TCONS_00067979 lncRNA downstream 418939 38852270 ~ 38861479 (-) True XLOC_034951
TCONS_00067978 lncRNA downstream 444512 38830384 ~ 38835906 (-) False XLOC_034951
TCONS_00067968 lncRNA downstream 512509 38756326 ~ 38767909 (-) True XLOC_034948
TCONS_00067967 lncRNA downstream 565856 38703600 ~ 38714562 (-) True XLOC_034947
TCONS_00067989 lncRNA upstream 13214 39373539 ~ 39375761 (-) True XLOC_034957
TCONS_00067990 lncRNA upstream 77059 39437384 ~ 39441050 (-) True XLOC_034958
TCONS_00067997 lncRNA upstream 193433 39553758 ~ 39557294 (-) False XLOC_034961
TCONS_00067998 lncRNA upstream 193433 39553758 ~ 39560882 (-) True XLOC_034961
TCONS_00068002 lncRNA upstream 384909 39745234 ~ 39746022 (-) True XLOC_034964
TCONS_00067982 mRNA downstream 76619 39180876 ~ 39203799 (-) True XLOC_034954
TCONS_00067977 mRNA downstream 418677 38821438 ~ 38861741 (-) False XLOC_034951
TCONS_00067976 mRNA downstream 418677 38821438 ~ 38861741 (-) False XLOC_034951
TCONS_00067975 mRNA downstream 418677 38821438 ~ 38861741 (-) False XLOC_034951
TCONS_00067974 mRNA downstream 472599 38804370 ~ 38807819 (-) True XLOC_034950
TCONS_00067988 mRNA upstream 12909 39373234 ~ 39378903 (-) False XLOC_034957
TCONS_00067991 mRNA upstream 102725 39463050 ~ 39537292 (-) False XLOC_034959
TCONS_00067992 mRNA upstream 103638 39463963 ~ 39471658 (-) True XLOC_034959
TCONS_00067993 mRNA upstream 177465 39537790 ~ 39551935 (-) False XLOC_034960
TCONS_00067994 mRNA upstream 183461 39543786 ~ 39551913 (-) False XLOC_034960
TCONS_00067983 other downstream 45306 39234995 ~ 39235112 (-) True XLOC_034955
TCONS_00067981 other downstream 143644 39136650 ~ 39136774 (-) True XLOC_034953
TCONS_00067973 other downstream 472593 38804123 ~ 38807825 (-) False XLOC_034950
TCONS_00067953 other downstream 636131 38642119 ~ 38644287 (-) False XLOC_034941
TCONS_00067949 other downstream 642129 38635643 ~ 38638289 (-) False XLOC_034940
TCONS_00067999 other upstream 355387 39715712 ~ 39716073 (-) True XLOC_034962
TCONS_00068010 other upstream 1178245 40538570 ~ 40551054 (-) False XLOC_034968
TCONS_00068023 other upstream 1588550 40948875 ~ 40949190 (-) True XLOC_034975
TCONS_00068036 other upstream 2054265 41414590 ~ 41416307 (-) True XLOC_034982
TCONS_00068043 other upstream 2132692 41493017 ~ 41493131 (-) True XLOC_034985

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000026_11123998_11200321.mRNA True 3645 mRNA 0.54 17 CI01000026 11123998 ~ 11200321 (-)