RNA id: TCONS_00067977


Basic Information

Item Value
RNA id TCONS_00067977
length 5078
RNA type mRNA
GC content 0.44
exon number 16
gene id XLOC_034951
representative False

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 38821438 ~ 38861741 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCACAAGCTGGGGGTGAATGGGATGGAAGAAGAGTTCTTGTTTTGTATATCAGTTTCtgtctttttatgtatttttggttaaaaatCAAGCGAACAAAGCGTTGAATCCTCCTGGTACACAGTACACAACTTTAAAGCGCTAAAGCGAGTAAATTCGACCGCGGGATGGTGTTTTAGTGGTGAAATGCCCGGCTGTTTGtagatatatatttaaataattggtgactgtgtgtgtaagtgtatgaAGATCGGGGTTTGACTGCTGAAGGAGTGTGTACAAGGCTCCACCCCCCACTCTGCCAGTTGGATGGTGTTCAAGACGGCAGACGTTGGGAAGGCAGCTGTGTTGGGTTTTGGGAAGAAGAGATCGATGATGGAACTGCAAAATTTACAGGAAGCACTCAAAGTGGAAATCCAGATCCATCAGAAACTCGTGAGCCAAATGAAGCAAGATCCACAGAAAAAGGTGGTGGAGCAGTTAAGGAGAGATCTACTGGTGAAACAGGAAGATATGAAGCTGCAGACGCTACAAGCCGATGGGCAAACGTCTACTTTGCTCATCACGCAGACACAGACGCCTCTGCCTGCTGCTAGCCTCACCACTCCACAGAGCTCTGTGACCCCTGTCATTGCTTCAAAGACTCTACCTCTGGTGTTGAGAGCTGCCACGCCTGCCTCACCGATCATCATGACACCAGCACCTACCATCACAGTGGTCACAACCCTTGGCAACACGCTCTTGGCAAGCCCTTCGTGTGCAGATCCTCAGAAGTCCCCAGTAAACTTCCAACCAGTCATCCAGTCGAGCAATCAGGGAGCAGAGCCAGTGCGAGTCATATCCAATAGCACTGTTGTTGTGCAAGCTGCCTCCCAACCTATCAAAGTTCCTCAGTTTGTCCCACCAACCAGACAGACAACACGGCCAGCCGCTCTACCGCAGGTCAGGCCAAAGCCTCCAGTGTCTTTGACTCCAGTTGCTGGTCAGGTCTCTGTGCAGACCTTGCAGTCGCCAGTGTTATTGAGCACTGCCCTCCCATCCTCTGGTCACGTCCAGCAGATGCGTATCCTCAATGGCCTGCCCAGTCCTAACAACACAAGCATCCTGATTTCCCCATCTACACACATCCAGGCCtctgcgcaaacacacacacatcagttacCTCACAACAGCCCAAGCTCTGACAACACGATACCTGCAGTGGAATATGGGACAGAGCCAAAGACTTCATTGCTCATCTCTCCAGACACGCCTACACACACTTCACCTCCACTGTCCTTAGAAACGCCATCATCACCCGCCTCCACCAACACACACACTCCTTCCTCCAAACACCAGGACAGCCCTCTGAAAATGGCCTTCATGTTGTCTCTGGGACTGGTCACACGCGACTATTTAGAAGAGATTCAGAGCAGGCGTCAGGAGCGTAAGAGACGAACAACAGCAAATCCAATATATAGTGGAGCCATGTTTGAACCAGAGAGGAAGAAGAGCTCTGTGTCTTATCTGAGTTCCATAAACCAGTCCAGCAGGAAGAGAGCCAATGAGGACAGCCTATCAGAGATTCTGCAGAAGGAAGATGCCATTGAGTGGCCAGGAACTCTTGCTATTGTACATTCCTACATCTCTTACAAAGCAGCTAAAGAGGGAGAAAAGGATCGACTGAAGAGATGGAGTGCAGAACTGCGTCAGGAGAGAGAAACGCTAGAACACAGAGTCGGACAGCTCAGCAACTCCATAACGAAATGTATGGACAGCAAGAATAACGTACTGGCCCAGCAGAGAGACATGGAGGATTCACTCGACAAAATAAGAGGCCTGGTGCATCTGATCAGAGGAATCCAGCTGTCTCCTTTCATCTTGGCTAATGGAGAAATGTCCCACATTGGAGCTTCCGAAGCCAGCAGCTCCACTAcagacacaaacaacaacacaaatacCACAACAAGCTCCTCGGGGGCTACGGTGATAGTCAGAACCCTCTCAAACACTAGCGAAACCTTAAACCAGACCGGCGTGAGTAATAACACGGAAGCTACAAGCGCAAAGTGCGACGAAGGCAGCGAGGAGAGCACACAAATCAACAGCACGGCCAGAATCAGGAGCGAACCCACAAATACAAACGCAGCAGCCTTCAGCAATAACAGCAGCAGCAACCTGGCGGTTCTCAGTTCCAACGGAACCGTATCCGCAGGGGAGGAGAACacgaaaaaacacaaaaacaacagtgaCCTCAGCGTCATCCCACAGGCCCTCCTCGGCCCCATCGTACCCCTCACAGAAGTGACGGAGGGCGTCAAATAGCGTCGAACGCAGTTGGGAGCCTAAAGCGTGCCAGTTAacagtgttgttgttttgtgtcGTCGTTTCATCTCTTGTATCTATGAGGGAAAGAAAATCCATAGTGCCATTTACTACATGCAGGAAGAAGGTTCCTAAAGTACCAGCAATGTGTATGCTAACGTATGCACACGGAGAAGATTTCTACAAAGAATAATGATATAGAAAAGAGTAATAAAATTTAAAGATATCACACCATTGTGTGCCTGATACAGTTGCCATATAGCACCTCTGAGTGGGAAGGCTTCTGAAGGCTGGATCGGGTGAAGGTCTCGTCCTGCTAGATGAGTAGTGCAGCTTCCTATCAGGTTCCTGTAGCTCCGATCTAAGACAAACGATACGACGCGTCTGTTTTTGTCTGTGAAATGCAGCCGAGGTGCAGTCGTTTCGTCTAGTTTTCAGTTGTCACGTCTCCAGAGGAACATGGAGCGCAAAAACAGGtctttatcacacacacacactgacaagaAACACAGGTCTTCCAGGCGTTCTGCTGGAGGTTTAACTAGTATCATTTGCATTTGTCTATTTTGTggtgtttttaaagaaaaaaaaatcgaacatttctgtaaatatgttttgctattttttacACATGACCTTATTTATAATTTCCTTCTTATTAAAAAAATCCGTAGTTCTGTTCTGCCAAATAATCGATGCCACAGGGAACTGTTCTTTTACGTTACTCTGAACATTAAAATAGATATTTAAGAGTAGTAGAGTAGTATTCGTAGTGTCGGTCCTGAAGTGTCTGTGAGGTAAATTCTGACCATGCCTTATCTACTGAACAGATGTGATTTACTGAGAGCGCGGTTCTCTCTCATCCTTCTCCATTTCCACATTGAtttgattatgtttttgtttttacccagactgTAGCAGGGGTCTCATGCCTTGTCCAATGACTTACGAGGAATCATGCAGTCAGAAATATCCCATAAAACCGGTGTGCCAGTAACGTTATGCTTATGGGCCAATTTAAGGGCTTCTGTTCTGTATCGTTTTAACACACATGGAGTCACTTTACTAGGCGATAATAACACTGTTCTGAAAGCTGTCCAAAAGCACAACACAGCATGCCTAGTGCAACTACTCCACCATTGTTTCTTAGGAGCTTTGCTTCTTTTTTCTGTTTCACATTTTGCATTTCTCTATCATATCAGAGCTCTTTCTCACCACTGTGTGCTTTCCAGTGTGTGACTGAACATGAACAAGCACAGACAAACACGCCAGACCACTTCAAACACCAGAGATTCAGCCGCGGTAGCTTGAACACTGTATCATGTGCCAAGACGACACTGCTTTCAtagtgtttaaataaaaatagaaaagcacAAGAAATAATCCAGAAACACAGCGGTGTCAAACACACATGGGGTGCGTCGCTTTTGATAAAAGACAGAAATATCTCCAGTGTTTATATCTTCGTTTCAGGTTCGTGAGTGTTTTCGATCCTGAACATGCAGCTCTAGCCTGCAGTAGCCTCTGTGTATTGGTTGCCTTAAGTTCTATAGACTATGTTAGGCTGTTTCACCGTAGTGTTATGACTTGTCGGTGTCTTAGAGTgtgctttttttctcccccctttTCGGAAACAGAACCTACTTTGTCATCCGGTGTGGTTGTGTTAGTGAGGACAGTATAGCGAATCCGACCACTACACGTTAGGAAAGTGCTTTCTGAAGTGCTTGCGTCTTCTGTCAAAACACAATATGAATTGCTGGTTTGTTTGTTCACCTTTCTAAGAACTTACTTTTGGTTAAATGATTCCATCCCAGGATGATGATCTGGGTATGTACccctcattttaattttattccaTCTAGTATTCACATGTTTTGTCTGATGAAAAAATTATACTACAACATATTTTGTCACAATTGTGAAAATTCCAAAGTGACACGCAGGAAAGCTGCGTTCTGTTTGGTGGTTTATTGGTATGTCAGGTTTTCttgtgcattgaaaaaaaaagaagaaagaaaagggAAAAGAGCCCTTACATAAACGCTCATCAGATGTGACATTTGCAAATGTCATCTCCCGTCTTTAGGGCCAAGAATCCTAAGGCCAGATGTGGCTAGTAGGACTGACAGTGCTTCTGTGACAGATGTTCTCTGATGAGATAGATGGGAATCTACTGTGTCTCCTCATTCATGTCCCTTACACACGAGAATTGGGTATAGTGTCCTGAAGTGTGCGAAATCTGATTGTCAGATGTTATAGTGTTTACTGAGAGCTCAGGCTTTTGTTCACGTTTTCAACGTACGCATAATTATGCTTATGAAGAGTCACATTCTTACACCTCATGCTGTTACCTCATTCAGGTTGATGAAACcctcaaaaataaaatcaaggaCGGATTATTGCGAGCTGAAAATATCAGTCTGTAATCTAAAGTCCTTAACTATAAATTGAGAACACATTTTACATCAATTTGTTGTATTAAAAGTGTCTAGATTCTTTCATAGTTTTTAAAAGGGATGTGTATTGCCGTTTCTgtttcattttacttttatacattttgtatgtttgtttttttattcttataattAATCTTGTGTGTTGCCTGATGTCTGTTTACCTTTTCTCATAGAATTCAAATCCATGTGTAAGTTATTTGAATATAtaacttcatgaattttttctgTTGAGGACACTGGATATTACTGGAGCATTTGatcaatttgtatttatttatttttaccatttttgctaaataaaattgtaaattaaatag

Function

GO:

id name namespace
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0000118 histone deacetylase complex cellular_component
GO:0003682 chromatin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050208-99 Predicted to enable chromatin binding activity. Predicted to be involved in negative regulation of transcription by RNA polymerase II. Predicted to be part of histone deacetylase complex. Is expressed in central nervous system and neural plate. Orthologous to human PHF21A (PHD finger protein 21A).

Ensembl:

ensembl_id ENSDART00000173953

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00067968 lncRNA downstream 53529 38756326 ~ 38767909 (-) True XLOC_034948
TCONS_00067967 lncRNA downstream 106876 38703600 ~ 38714562 (-) True XLOC_034947
TCONS_00067957 lncRNA downstream 164235 38653793 ~ 38657203 (-) False XLOC_034943
TCONS_00067955 lncRNA downstream 170133 38649588 ~ 38651305 (-) True XLOC_034942
TCONS_00067951 lncRNA downstream 182641 38637207 ~ 38638797 (-) True XLOC_034940
TCONS_00067980 lncRNA upstream 116261 38978002 ~ 38980678 (-) True XLOC_034952
TCONS_00067985 lncRNA upstream 418677 39280418 ~ 39360325 (-) False XLOC_034956
TCONS_00068689 lncRNA upstream 473431 39335172 ~ 39336854 (-) False XLOC_034956
TCONS_00067989 lncRNA upstream 511798 39373539 ~ 39375761 (-) True XLOC_034957
TCONS_00067990 lncRNA upstream 575643 39437384 ~ 39441050 (-) True XLOC_034958
TCONS_00067971 mRNA downstream 13611 38793832 ~ 38807827 (-) False XLOC_034950
TCONS_00067974 mRNA downstream 13619 38804370 ~ 38807819 (-) True XLOC_034950
TCONS_00067972 mRNA downstream 15252 38799608 ~ 38806186 (-) False XLOC_034950
TCONS_00067969 mRNA downstream 28895 38787831 ~ 38792543 (-) False XLOC_034949
TCONS_00067970 mRNA downstream 31097 38787924 ~ 38790341 (-) True XLOC_034949
TCONS_00067982 mRNA upstream 319135 39180876 ~ 39203799 (-) True XLOC_034954
TCONS_00067984 mRNA upstream 394040 39255781 ~ 39360325 (-) False XLOC_034956
TCONS_00067986 mRNA upstream 473129 39334870 ~ 39360325 (-) False XLOC_034956
TCONS_00067987 mRNA upstream 477084 39338825 ~ 39360325 (-) True XLOC_034956
TCONS_00067988 mRNA upstream 511493 39373234 ~ 39378903 (-) False XLOC_034957
TCONS_00067973 other downstream 13613 38804123 ~ 38807825 (-) False XLOC_034950
TCONS_00067953 other downstream 177151 38642119 ~ 38644287 (-) False XLOC_034941
TCONS_00067949 other downstream 183149 38635643 ~ 38638289 (-) False XLOC_034940
TCONS_00067914 other downstream 1127486 37693838 ~ 37693952 (-) True XLOC_034923
TCONS_00067911 other downstream 1257473 37560080 ~ 37563965 (-) True XLOC_034921
TCONS_00067981 other upstream 274909 39136650 ~ 39136774 (-) True XLOC_034953
TCONS_00067983 other upstream 373254 39234995 ~ 39235112 (-) True XLOC_034955
TCONS_00067999 other upstream 853971 39715712 ~ 39716073 (-) True XLOC_034962
TCONS_00068010 other upstream 1676829 40538570 ~ 40551054 (-) False XLOC_034968
TCONS_00068023 other upstream 2087134 40948875 ~ 40949190 (-) True XLOC_034975

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000026_10872568_10886442.mRNA True 2253 mRNA 0.51 12 CI01000026 10872346 ~ 10886442 (-)
rainbow trout (Oncorhynchus mykiss) TU109340 True 860 TUCP 0.43 2 NC_048565.1 88777904 ~ 88782029 (-)
eurasian perch (Perca fluviatilis) TU109340 False 566 lncRNA 0.37 2 NC_053119.1 1287408 ~ 1341360 (+)