RNA id: TCONS_00067988


Basic Information

Item Value
RNA id TCONS_00067988
length 1093
RNA type mRNA
GC content 0.47
exon number 7
gene id XLOC_034957
representative False

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 39373234 ~ 39378903 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGGAGGGCTGATAAGAAAGCTCGTCACGATGTTTGTGTAGGAAGTACTGGTGTGACCCGTCACACTTCCCATTTATTCGACTTTCTCTGTTGACAGTGTAGACGTGCGTTCTTGCGTTATTTTTAGCTCAAACCCCACATTGTGATTCACCGCGTCTAATTACATGGggtgttttatactgaaacaaaAACGCGCAAGAGAACCTGGAAGGGTATTGTCAAAATTCAGATGTTAGTGTTGGATATTGAAAAGCAATGTTGAAGCAGTGTCAGCCTACAAATGCGTGCTTTGCGTTTACTGCTGCTTTTCTCCTCCGTTGCTCTGCAATGGGATCGTGCCAGCTGCCAGAAATCTGTTTACATACAACTCATTCCCCCTCCTGGGAATGCGCGGAGTTCACACGGACCTACAGAAGTTACACCGAGCCGCAAAGGAGATGAGTGTGATGTGGTGATGAACGTGTCTGCCAGTCAGAGATGCGAGTATGTGAAGAATACACCGGATTGTGCTTCAGATGAAGGATTCATCAAATACCCTTTTGTCACCTTTTGCCTATTCACACCAAGTCTTCTGCCCCTAGCCATCACGATCTATGTTATCTGGCTGTTGTTTTTGTTCCTCGTTCTTGGACTGATTGCATCAGACTTCTTTTGCCCAAATCTCTCTGCCATTGCCTCCACACTAAGACTTACTCATAATGTGGCTGGAGTGACGTTCCTGGCTCTTGGAAATGGGGCTCCAGATGTGTTCAGTGCCATGGCTGCTTTCTCTCACCCTCAAACTGCTGGTCTGGCCATTGGAGCACTTTTTGGAGCGGGAATCTTTGTTACAACAGTGGTCGCGGGGAGTGTTGCTCTGGTTAAACCTTTTACTGTGGCGTCTCGTCCATTCCTTCGTGATGTCATTTTCTACATGGCTGCTGTGTTTTGGACCTTCACTGTCCTGTATAAAGGCCACATTTCCTTGGGAGAATCCGTGGGTTATTTGGGGATGTATATTGCATATGTTTTTACTGTGATTCTGAGCTCATACATTTACAACCGTCAGAAGCATCAGCTAACAGAATCACCCCAGAGCTCCGACAGAGAACAGG

Function

GO:

id name namespace
GO:0099093 calcium export from the mitochondrion biological_process
GO:0055085 transmembrane transport biological_process
GO:0006812 cation transport biological_process
GO:0006874 cellular calcium ion homeostasis biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008324 cation transmembrane transporter activity molecular_function
GO:0086038 calcium molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-130530-900 Predicted to enable calcium:sodium antiporter activity. Predicted to be involved in calcium export from the mitochondrion. Predicted to act upstream of or within calcium ion transport and transmembrane transport. Predicted to be integral component of membrane. Predicted to be active in membrane. Orthologous to human SLC8B1 (solute carrier family 8 member B1).

Ensembl:

ensembl_id ENSDART00000173659

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00067985 lncRNA downstream 12909 39280418 ~ 39360325 (-) False XLOC_034956
TCONS_00068689 lncRNA downstream 36380 39335172 ~ 39336854 (-) False XLOC_034956
TCONS_00067980 lncRNA downstream 392556 38978002 ~ 38980678 (-) True XLOC_034952
TCONS_00067979 lncRNA downstream 511755 38852270 ~ 38861479 (-) True XLOC_034951
TCONS_00067978 lncRNA downstream 537328 38830384 ~ 38835906 (-) False XLOC_034951
TCONS_00067990 lncRNA upstream 58481 39437384 ~ 39441050 (-) True XLOC_034958
TCONS_00067997 lncRNA upstream 174855 39553758 ~ 39557294 (-) False XLOC_034961
TCONS_00067998 lncRNA upstream 174855 39553758 ~ 39560882 (-) True XLOC_034961
TCONS_00068002 lncRNA upstream 366331 39745234 ~ 39746022 (-) True XLOC_034964
TCONS_00068011 lncRNA upstream 1162393 40541296 ~ 40561374 (-) False XLOC_034968
TCONS_00067984 mRNA downstream 12909 39255781 ~ 39360325 (-) False XLOC_034956
TCONS_00067986 mRNA downstream 12909 39334870 ~ 39360325 (-) False XLOC_034956
TCONS_00067987 mRNA downstream 12909 39338825 ~ 39360325 (-) True XLOC_034956
TCONS_00067982 mRNA downstream 169435 39180876 ~ 39203799 (-) True XLOC_034954
TCONS_00067977 mRNA downstream 511493 38821438 ~ 38861741 (-) False XLOC_034951
TCONS_00067991 mRNA upstream 84147 39463050 ~ 39537292 (-) False XLOC_034959
TCONS_00067992 mRNA upstream 85060 39463963 ~ 39471658 (-) True XLOC_034959
TCONS_00067993 mRNA upstream 158887 39537790 ~ 39551935 (-) False XLOC_034960
TCONS_00067994 mRNA upstream 164883 39543786 ~ 39551913 (-) False XLOC_034960
TCONS_00067995 mRNA upstream 166921 39545824 ~ 39552314 (-) True XLOC_034960
TCONS_00067983 other downstream 138122 39234995 ~ 39235112 (-) True XLOC_034955
TCONS_00067981 other downstream 236460 39136650 ~ 39136774 (-) True XLOC_034953
TCONS_00067973 other downstream 565409 38804123 ~ 38807825 (-) False XLOC_034950
TCONS_00067953 other downstream 728947 38642119 ~ 38644287 (-) False XLOC_034941
TCONS_00067949 other downstream 734945 38635643 ~ 38638289 (-) False XLOC_034940
TCONS_00067999 other upstream 336809 39715712 ~ 39716073 (-) True XLOC_034962
TCONS_00068010 other upstream 1159667 40538570 ~ 40551054 (-) False XLOC_034968
TCONS_00068023 other upstream 1569972 40948875 ~ 40949190 (-) True XLOC_034975
TCONS_00068036 other upstream 2035687 41414590 ~ 41416307 (-) True XLOC_034982
TCONS_00068043 other upstream 2114114 41493017 ~ 41493131 (-) True XLOC_034985

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000026_11226603_11231478.mRNA True 807 mRNA 0.48 7 CI01000026 11226603 ~ 11231478 (-)