XLOC_034964 (grpel1)


Basic Information

Item Value
gene id XLOC_034964
gene name grpel1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 39744244 ~ 39751540 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00068001
GCGTGTGTCTCATCTTGGACAGTCAGTGAGTAAAGATGGCGAACTGGTGCGTGCGCGCGATCAGACACAGCTCTTCAATCTTAGCGTCCCCTTCACTAGTAAGGGCGACTCCACGTCTGCTTTGCACAGCAGCCCAACAGAAAAGCTCAGGAGCAGGTACTGAAGAGGAGAGTGGAGCTCAGAAGCAAGAGCCTGGCACAGCTGAAAAAGCCTTCTTAGAAGAAAAGACACAACTGGAGGAGCAACTAAAAGATGTTACGGATAAATATAAGCGTGCACTGGCAGACACTGAGAACCTTAGGCAAAGGAGTCAAAAGATGATCGATGATGCTAAGCTTTATGGgatacagggtttctgcaaggATCTCTTGGAAGTGGCTGACATCTTGGAGAAGGCAACAGAAAGCGTTCCAAAAACTGAAATATCTGCTGCTAATCCACATCTGAAAAATCTTTATGATGGCCTTGTAATGACTGAGGTGCAGATCCAAAAGGTCTTCCAGAAACACGGCCTTGTTAAGCTTAGTCCCGATGGTCAGAAATTCGACCCGTATGAGCATGAGGCAGTCTTTCATGCACCGGTGGAGGGCAAAGAGCCAGGTACCATAGCTTTAGTTACAAAAGTAGGCTACAAGCTGCACGGTCGTACCCTCCGGCCAGCTCTTGTTGGTGTAGTCAAGGCTCCCTAACCGATCCTGCACACTGCTTGGTTATCAACTGGTTGGTTCCTATAAGTTAGCTGAACTTCAGTTCCACTTTCATTTGTTAAAGATGCCTCTAAGAGGTGAAATCCAATATACAGACAACTGAAGGACAATGCCAGACTTCTTTTTGTGAtttcattataattatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatgaaagccGTGTATGTGGAATTGACAGAATTTCTGATTGGCCACAGCAATATTTTCTGGAGGATCATCACCATTCCAGAGACCTCTGAGATCTAAAGAAACACTGCAGTGTATTACATCTCAAACATCTTAAAGTTCTTATTTGCTCTTATTAATTACTGATTATCAGTTTGGTGATGTTTTACAACAGTTGTTAGATTCCACTTTTGTTTTGTCAGTGTTAAGCAGGTTTTTCAGTTTGTACAAGGTAATTAGTCTTCTATACAGGATTTGGATTAACattttatcttaaaatatatttataatttcagaataATTTTCCTACTTGCTGTTGTACTTTCTAACTTTCATGATTAGTTTCATAAAGTGCAAACATGATGAAATGTCACACTTCAATCAACAGATTGTAATAAAAACTGACTTGGTTTTTGTGGAGATCTGAGAAAATAAGGATGGCTTGAAAAGATCACTTGACAGATTTGTGTCtgacaaaattaatgtaaatggtGGTTGTAATATGAATAGAACAATGCTTTGCTAAAAGAAAATTGGAACATAGTATATAAAGGTTTTTGGATTCAACATTTCCATGTATGTAAACAGGCAAACTCTTATCAAATAAAGCATGTACCTCTTCATTATCA
>TCONS_00068002
AAACAGCGACATCCTCTGCACCACCACTTGTTTCAAAAGTCTACAGCCCCTCCAGAACCCTCCAGTCAATAATTATCACCCATGGTACCATCACAGAGAGGCCCTCTTTATTCATTGCTGATGGACTGACCCTTGCGAACCCAAACAAAGTGGCAGCATTCAAACAGCAATTGAAAGCTTACGTCTGTTTTGACCACCTAATTAGATcttaaaaaattacataataagtTACATAACAATAACATCAGCTAAATAAACAACACATGACATCTGCATACACATCAATGTTTAAAGCTTAGGTGTAATTGGTGTTTGAAAGTTCAGCATGCTGTATTTTGGGGTTTATCATCTGATCATTTGGTTGTCTTTTTCTGCAGGATAAATATAAGCGTGCACTGGCAGACACTGAGAACCTTAGGCAAAGGAGTCAAAAGATGATCGATGATGCTAAGCTTTATGGgatacagggtttctgcaaggATCTCTTGGAAGTGGCTGACATCTTGGAGAAGGCAACAGAAAGCGTTCCAAAAACTGAAATATCTGCTGCTAATCCACATCTGAAAAATCTTTATGATGGCCTTGTAATGACTGAGGTGCAGATCCAAAAGGTCTTCCAGAAACACGGCCTTGTTAAGCTTAGTCCCGATGGTCAGAAATTCGACCCGTATGAGCATGAGGCAGTCTTTCATGCACCGGTGGAGG

Function

symbol description
grpel1 Predicted to enable adenyl-nucleotide exchange factor activity and unfolded protein binding activity. Predicted to be involved in protein import into mitochondrial matrix. Predicted to act upstream of or within protein folding. Predicted to be located in mitochondrion. Predicted to be part of PAM complex, Tim23 associated import motor. Orthologous to human GRPEL1 (GrpE like 1, mitochondrial).

GO:

id name namespace
GO:0030150 protein import into mitochondrial matrix biological_process
GO:0006457 protein folding biological_process
GO:0001405 PAM complex, Tim23 associated import motor cellular_component
GO:0005739 mitochondrion cellular_component
GO:0000774 adenyl-nucleotide exchange factor activity molecular_function
GO:0042803 protein homodimerization activity molecular_function
GO:0051082 unfolded protein binding molecular_function
GO:0051087 chaperone binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-051120-111 Predicted to enable adenyl-nucleotide exchange factor activity and unfolded protein binding activity. Predicted to be involved in protein import into mitochondrial matrix. Predicted to act upstream of or within protein folding. Predicted to be located in mitochondrion. Predicted to be part of PAM complex, Tim23 associated import motor. Orthologous to human GRPEL1 (GrpE like 1, mitochondrial).

Ensembl:

ensembl_id ENSDARG00000010021

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00068001 False 1578 mRNA 0.38 4 39744244 39751540
TCONS_00068002 True 705 lncRNA 0.42 2 39745234 39746022

Neighbor

gene id symbol gene type direction distance location
XLOC_034963 ccdc96 coding downstream 5784 39730429 ~ 39738460 (-)
XLOC_034962 BX908792.1 coding downstream 28171 39715712 ~ 39716073 (-)
XLOC_034961 ptprja coding downstream 133135 39553046 ~ 39611109 (-)
XLOC_034960 slc22a18 coding downstream 191930 39537790 ~ 39552314 (-)
XLOC_034959 otog coding downstream 206952 39463050 ~ 39537292 (-)
XLOC_034965 shrprbck1r coding upstream 307217 40058757 ~ 40082053 (-)
XLOC_034966 si:ch73-174h16.5 coding upstream 350851 40102391 ~ 40122139 (-)
XLOC_034967 wdr60 coding upstream 371378 40122918 ~ 40145097 (-)
XLOC_034968 dnajb6b coding upstream 785388 40536928 ~ 40578733 (-)
XLOC_034969 NA coding upstream 805496 40557036 ~ 40561701 (-)
XLOC_034958 BX842701.1 non-coding downstream 303194 39437384 ~ 39441050 (-)
XLOC_034955 CABZ01033553.1 non-coding downstream 509132 39234995 ~ 39235112 (-)
XLOC_034953 CR356225.1 non-coding downstream 607470 39136650 ~ 39136774 (-)
XLOC_034952 CR382325.1 non-coding downstream 763566 38978002 ~ 38980678 (-)
XLOC_034973 CU041319.3 non-coding upstream 1115275 40866815 ~ 40884705 (-)
XLOC_034975 CU041319.2 non-coding upstream 1197335 40948875 ~ 40949190 (-)
XLOC_034985 BX005319.3 non-coding upstream 1741477 41493017 ~ 41493131 (-)
XLOC_034988 NA non-coding upstream 1956000 41707540 ~ 41709193 (-)

Expression


Co-expression Network