XLOC_034965 (shrprbck1r)


Basic Information

Item Value
gene id XLOC_034965
gene name shrprbck1r
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 40058757 ~ 40082053 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00068003
GTTGGAGCCGTGTGTTTCTTCCTGCTCTGACGCTCAACTTCCCTCTATCCGAAACTAAAACAAAGATGACAAGGCCGCGACTTTTGCGTAAATGTCCGGATCAGAGAGTTGTAGGACATCTCCAAGCATCATATTAGCGCAGAAACGCTGGCTTGTACTGGGGTGTCAACGCGATAAATCCCCGCCTGAAGTAGTGAGTCGGTGGCGGCGGCATGTCGCTGAGCTCCGGCGGGTGGACTCGAGCATCTCCGCCGGCCCAGTCCTCGTCGTCTCACCTCGGCCACGAGGCCTCGCAGTCGGCATGCAGCACTGTTTTGATGTCGGTGAAGGTGTCGGTATGCCATTCCGGTATACGGCCGCTATGTCTCCCCGGAGCAGGAGACGAATCTCTCCGTCTTCAGCTGAGCATGGACCCCGGGAAAGCAGGGGAATTCCGCCTCGCGCTGCGGGATATCAGCGCTACAGCGGCCGGGCGCAGTGTGTTTATTGCTGAATTTGACCTCAAGACTGTTCAATATGAAGTCAAGACGCCACTGTGCCATGAACTGAGTTTGGCAACACCTCCACATGACCGTATCTCGTTCAAATTTCGGTGTGAACAGGAAGCGCAGGAGTGGGCCACCGTGGTGATGTCATCCCTCCGTGAGGCACACAGAGTGGCAATTAGTTCCTCCACTGAAGAAGGGCGACTACCTCCTCCACCTCTGGCCACACAGAGCAAAGCACCCATGCCACGCACAGAGGAGATCTGTGCGGAGCTGGTCAGTGCGATAGAGGCAGGTGATGTACGGTCTGCATCAGTCTGTGCATCGTCTTTAGCTAAACAGAAAGCTGCTCTGAGCATTCAGCCCTCGAAACGAAACTACACAGACTCTGAAGTTTGCTTGGCTGTGGTGGTGGAAGATGCATCCTCTTCCTGTTGTGTCTCGGTGAAAGTCTTCCCACACTCCACAATTGGTGCTCTCAAACAGCAGGTCTTCTCAGACTATGGTTTTCATCCACGTGTTCAGCGCTGGGTCATTGGTCAGTCTTTGTGCTCTGACCATCGCTCTCTGGCATCCTATGGAGTCCAGCGAGATGGAGACACTGCGTTCCTTTATCTCATTTCTGCCCGTCAGGCTCGTCTCAGTCGAGGGATCTACCAGCAAGATCAGGAAAGTGCTTTACTCATGGTGCCAACGACTCACCAGGCCCACCAAGAAGCAGTTAGCAATGGGCCAGCAGCACTCAACACAGCCTCAAGACCATACAGCACCCTGCCTACAAGACTTCATAACAGCCATAATACTCTGAGTAACAATGCTGGAGGATCAGAGAGGTTGGGTTTAAGTGATATTCGTGACCTGATCAACCTTGAGCTGCCACAGCTAAATGAAGCCCTGGGTCCCAACAGAACAAGCATACAGCCGGGATGGGCCTGCCCGACCTGTACGTATATTAATAAACCAACCCGTCCAGGCTGTGAAATGTGCAGCGCAGACAGACCTGAAGGATACACTGTTCCTGGCAACTACAGACCAGATGCTTTAGAGCTGCGACGCATTCAGCAAGAAAAAGAAGCAATAAGGCAGTACCAACAGGCCAGGGAAACAGAGCGCAGAGAGAACTTTGCTCGCCTGGTACAGATGGACGGGCAGGATCTGGTGCCAAACCCGGAGCGAGTGGAGTGCAGGATCTGTTACGTGGAGCTGGAGTCTGGTGAAGGAGTGCTCCTGAGAGAGTGTTTGCACTGCTTCTGCAAAGAGTGTCTGCGCTCTGTGATTCTGATGTCGGAGGACCCTCAGGTGGCTTGTCCATACAGAGACGAGTCCTACGCCTGTGACTGCGTCCTGCAGGAAAGAGAAATTCGAGCTCTGGTGTCAGTGGATGATTATCAGCACTGGCTGCAGAGGGGTCTGTCTGTGGCGGAGTCTCGCTGTGAGGGCAGTTATCACTGCGCTACTGCCGACTGTCCTGGCTGGTGTGTTTATGAGGACACTGTCAACACTTTCCACTGTCCAGTGTGCAAGAAACAAAACTGCCTGCTCTGCAAGGCTATTCATGAAGGGATGAACTGTAAGCAGTATCAGGATGATCTTACAGCTCGAGCCATCAATGACTCTGCAGCTCGAAGGACCAGAGACCTGCTGAAGACTCTTGTTAATTCTGGAGAGGCGATGCATTGCCCCCAGTGCGGCATCATTGTCCAGAAGAAGGAGGGCTGTGATTGGCTGCGCTGTACCGTCTGCCACACTGAGATCTGCTGGGTCACCAGAGGGCCGCGCTGGGGGCCCAAAGGTCCAGGAGACATAAGTGGAGGCTGCCGCTGCAACGTCAACAAGCAGAGATGCCATCCAAAATGCCAGAACTGTCACTAAAGGGAATGgccgagaaaaaaaaaaggacgaGGTACGAGTAAATGTAGCGTATTGCATTATGAAAGCTTTTGACATTTTTATGTGGGCTGATATAAGTATATCGTCCACCTGATGCTTCTAACTGAAAAGTGTAGGTCTGTTGTACATCTAAAGTCGCAGTGGTGCATTTTATGGGATTAAATCACAAAGCAAATGAGCATCAGGCAAGTCCTATTAGACAACTACTGTAGTGTATCGGTCCACTTAGCATTCTAATGTGATTATTTATAAACACACCTCCACTGTGTGAGATTTCACCTGTAATATGATGTCTTGTATTAGAGTCAGTTGCAAAAGAAGAGGTACaaggaatagtttacccaaatatAACATCATTTAATGACCTTTTTCTTCTACTgtagaacacaaaacaaaacattttgaagaatgttggaaacatgtaactattgacctccattgtatttgtttttcctactatggctatcaatagttacaggtttccaacattcttcagaatatctccttttgtgttcaacaaactgaggaaactcataaaggtttggaagcacttgcGAGTGAGTAAACAGTAAATACATTATACTCATATATTACTCAtaacagtaaatacatttttgagtgaactgtccctttaaaatggCTAATGAATGTTCATTCAGTGAATACAGATTCTGATTGATTGAAAGTGACCGAGTGCTTTTAAGACAAAACCGCTACTTCGGTGCTGGAAATAGTGATTTGGAACTGGCTCATTATTTTGGAccagttaatttttttaagaaaaaaaaaaaaaagtcggtCAAATGGTTTACAGATCACTGTTAAACCTTTTAAGCAAGACTGATATGTGGGTGGCAGATCAGAGCTTTAACCAACGTATGATTTGACATTATTTAAGactttgttttaaacatttgacaaagtatatattttattacaaaattacacgtttttatgtatttatattttacccTTCTGCTCAAATGTTCCCAAGAGgacaaaaaaaaagccaaaactgTCAAAAGCTGCAGCTGATAATGAAAATAAGGGAATGGTTACAATGCACTTACacatatttgtgtatttgtcttgTCTTAAGCTCTACTACACTGTTGACACGTTACTGATAAGTGCCTTATCTTGCCTGTTTTCATCTCTAAGTTATGTAACCACTAACATTAGCCGTAATtttacattgttgttattattattattattataattattattattttacaaactatATGTAGCTGTTGTTGTTGATCTGTGATCCAGGATAATTTATGTGTGCAGTGTTTTCCCTTCATCTTTTCCACAGACTAAGTATTTTGTGCATTCATTCTGAAAGTTGAACACCGTACACTGCACTGCTCGATGATTAGACTgtttttaagctgaatattattgttaatatgtagATCAGTTATTTACTATTGTAACGTTGCATTACAGTGCTATGCTAATTTAAGTAGAGGTAATGGTCAAGAGCAGGTACCCAAGGCTTGCGTTAAAAAAACGTCAAGTCTAAATCAAGCCAAAGGACTGATGTAACTGCCAAAGCTTTCAACCCATGTGCTGAAGTCAGCATCCAAAGTATCTACTTATGCATCAAAATGAACATTTCAAGAGGGTAGTCGGATTTTTCATTTCAAAGCATTGATATTGTTCACTGAGAATCTGGACAGAAGTATCGCATTTGTACAGATGATTGTTCTGTTCATCCTTACTCGTGATATTGATCTGTAGCCTCACTGTTGTTGGGATAGAAGCATTATGAAGTTCCTGCATGAACCACAGAAGAAATGCGAAGGACTGAAAATGGGAAAGTCTTACACTTTAATCCAGTAGGTTAATCTGACCTCAGGGCTCCGAGTCTTAAAGAGTGCCTTACATGTTGTAATACTGAGCACCTGTAGTAACTATATTTAAAGCTGTTTAAATATTCTCCTTGTTACATATTTTGACTAATTTAATATGCTTTACATTttgttctttaaataaattaaaaactgttaccA
>TCONS_00068004
GTTGGAGCCGTGTGTTTCTTCCTGCTCTGACGCTCAACTTCCCTCTATCCGAAACTAAAACAAAGATGACAAGGCCGCGACTTTTGCGTAAATGTCCGGATCAGAGAGTTGTAGGACATCTCCAAGCATCATATTAGCGCAGAAACGCTGGCTTGTACTGGGGTGTCAACGCGATAAATCCCCGCCTGAAGTAGTGAGTCGGTGGCGGCGGCATGTCGCTGAGCTCCGGCGGGTGGACTCGAGCATCTCCGCCGGCCCAGTCCTCGTCGTCTCACCTCGGCCACGAGGCCTCGCAGTCGGCATGCAGCACTGTTTTGATGTCGGTGAAGGTGTCGGTATGCCATTCCGGTATACGGCCGCTATGTCTCCCCGGAGCAGGAGACGAATCTCTCCGTCTTCAGCTGAGCATGGACCCCGGGAAAGCAGGGGAATTCCGCCTCGCGCTGCGGGATATCAGCGCTACAGCGGCCGGGCGCAGTGTGTTTATTGCTGAATTTGACCTCAAGACTGTTCAATATGAAGTCAAGACGCCACTGTGCCATGAACTGAGTTTGGCAACACCTCCACATGACCGTATCTCGTTCAAATTTCGGTGTGAACAGGAAGCGCAGGAGTGGGCCACCGTGGTGATGTCATCCCTCCGTGAGGCACACAGAGTGGCAATTAGTTCCTCCACTGAAGAAGGGCGACTACCTCCTCCACCTCTGGCCACACAGAGCAAAGCACCCATGCCACGCACAGAGGAGATCTGTGCGGAGCTGGTCAGTGCGATAGAGGCAGGTGATGTACGGTCTGCATCAGTCTGTGCATCGTCTTTAGCTAAACAGAAAGCTGCTCTGAGCATTCAGCCCTCGAAACGAAACTACACAGACTCTGAAGTTTGCTTGGCTGTGGTGGTGGAAGATGCATCCTCTTCCTGTTGTGTCTCGGTGAAAGTCTTCCCACACTCCACAATTGGTGCTCTCAAACAGCAGGTCTTCTCAGACTATGGTTTTCATCCACGTGTTCAGCGCTGGGTCATTGGTCAGTCTTTGTGCTCTGACCATCGCTCTCTGGCATCCTATGGAGTCCAGCGAGATGGAGACACTGCGTTCCTTTATCTCATTTCTGCCCGTCAGGCTCGTCTCAGTCGAGGGATCTACCAGCAAGATCAGGAAAGTGCTTTACTCATGGTGCCAACGACTCACCAGGCCCACCAAGAAGCAGTTAGCAATGGGCCAGCAGCACTCAACACAGCCTCAAGACCATACAGCACCCTGCCTACAAGACTTCATAACAGCCATAATACTCTGAGTAACAATGCTGGAGGATCAGAGAGGTTGGGTTTAAGTGATATTCGTGACCTGATCAACCTTGAGCTGCCACAGCTAAATGAAGCCCTGGGTCCCAACAGAACAAGCATACAGCCGGGATGGGCCTGCCCGACCTGTACGTATATTAATAAACCAACCCGTCCAGGCTGTGAAATGTGCAGCGCAGACAGACCTGAAGGATACACTGTTCCTGGCAACTACAGACCAGATGCTTTAGAGCTGCGACGCATTCAGCAAGAAAAAGAAGCAATAAGGCAGTACCAACAGGAGAAAGGGAGAAGAGAGGAGCTGAGGGGCAACAACTCACTACTGCACAACCTCGACCAGGACTACTgattacaaacacacaaacacactcatactccAAACACaactacaacaccaacaccagCCGGTATACTGCACAACCTCTATATGCCTGAACAGATCACTGCTGAATAATTTGATCCATGCAAAGTCATCTTTTTTAAATGCAGAAGTTGAAATAGATATTAAACACTGCAGGTAATCTGTGTTGCAGGTACACAGAAACAGGTTTATACAATATTATTGCAAGGAGATCATACAGTCGCTTCACTACTTGATCTAATAATATCTTCCTTCCACACACTGAGCTTTTGTCTTGGTATAAATCAATTCAGGTACAGACTCTTTTAATGGGCTCACGCCTCAAGCATCAGAGGACATTGTATATCTCTGTAAGTAGATGAATGATACGATTCTTACTGCACAGCCTTTGCTTGAATGAATGTAAAGCTTCTATTTATATAGCCAATTTGATACAAGTTTAGTCTGACCTTACGATACAGTATCTCCTCATGgattgaaatataataataataataataataatatatattattattcaagaactaagtgatttaaaaaaatgcaaatgaactatTACTGCGTCCCATTTTCAGAGGTGATGAACAACGCACTTTTTGGTTTAGTGAAATCTAACCATACACTTTTGCTTACTGTACATAACCTTTGCTACATTGACTGTTGTTGTTCACACAAGCAACATGACTTTGACATCAAAGATGATATTGTAAGATAGAAGTAACTGAAGTAgagaggcgtttttttttttttttttttctctgtgaatGATGTTTCACATCCCAAACCTGTGCCGTAGGACTGTGCAACACTCATGACAATTTGTAATGATTTTACATTTTGCAGAATTTTATTGTATAGTCTTGcacaatgcacttttttttttaatgcaatctGCTTATGCCATACTGATCCTGGATTTGGGTGTGCGCCAGAAAAAGCACACAAATTCATAAAACAATCACTGCATTTTCTAATTAAAACAAATTGGACAATGTTTCAAAAACATCCAAACCTCAGAATCATAAATGCAGGCGAAGACAAACTTATTAACAGTGTGAAGTTTGAATTATatgttcaaatatttcctaagtgatgtttaacagagcaaggatatttttcatagtatttttattatattttttcttttggccaAAATGTTGTTAGGATAATGTTATCCTCAGAGAGGAAAAGCAATGCGTTTCCTACTTTTGTAGTTCttatctttaaaaaagtaaaaaaatgtccATTTAGATAATCCTCTTGtctttttcttccatgtgttcaaaataatgagaatatttccatCACAGAAATCTAAGGTTCTGTCATCTAcctttctttctgtttttgtgttttctcATTACGTTTGGAATTCAACGTGactgttcattttaattcagcgatttaatttttaaaaagcaaatgaactaaactaaaatgaactcgcattacatttttaaagagtaactcaaatattattttttaatttttaaaagtaatgcagtACTTTACTTGGGATTTaggaaagtaatattattacgtaactcttATTACTTGTAACTCATGTTACCCCaacactgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctatagttAGGGTGaagactagtatcttgaaaaataactagtaaaatgttttatgcagtaatGATGGCATAGCCAAAATAAACTAGTTGTGAGGtattagttattaaatatttttttgttaaaacacttggaaaatatttgtatAAGTTTAATCAAATTTTATAATTCTAAttcaataattttgtcttcaactgtacatgcatgGTAAGAGAGCAAATGTGAAATACATGTTTACTGGTATAGAATTCTCTTTAAAGACATAACTTGGTGAATTAAGATactattttcattttaacatcaaatcatattattttttttctaaaatattacaCCAAAGAGAGCGTAACTTACTTTTAACTCTCTGGTGCTTAGTGCATCATGGGTAAACCACATCTATAAGTAGGCCTGATGACAGGGAAAGAGAAAGAGATGTCTTTATGTCCTCACTTAGAGCTGTAATGTAGCATAACCTGTTTGTATGACTGTGGGCTTCATTCTTTCATCTTATGTACAATAGCCTTGATTTTAAGAAAGACAGATTGCTATGCAAATGAACTATGTGAAGtcgaataaagtttttttttttaaatagatgcaTATCA

Function

symbol description
shrprbck1r Predicted to enable ubiquitin binding activity and ubiquitin-protein transferase activity. Acts upstream of or within embryonic cranial skeleton morphogenesis and otic vesicle morphogenesis. Predicted to be part of LUBAC complex. Is expressed in inner ear; midbrain hindbrain boundary; otic vesicle; and pharyngeal arch. Orthologous to human SHARPIN (SHANK associated RH domain interactor).

GO:

id name namespace
GO:0097039 protein linear polyubiquitination biological_process
GO:0071600 otic vesicle morphogenesis biological_process
GO:0043123 positive regulation of I-kappaB kinase/NF-kappaB signaling biological_process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0048701 embryonic cranial skeleton morphogenesis biological_process
GO:0071797 LUBAC complex cellular_component
GO:0000151 ubiquitin ligase complex cellular_component
GO:0016740 transferase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0043130 ubiquitin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080220-52 Predicted to enable ubiquitin binding activity and ubiquitin-protein transferase activity. Acts upstream of or within embryonic cranial skeleton morphogenesis and otic vesicle morphogenesis. Predicted to be part of LUBAC complex. Is expressed in inner ear; midbrain hindbrain boundary; otic vesicle; and pharyngeal arch. Orthologous to human SHARPIN (SHANK associated RH domain interactor).

Ensembl:

ensembl_id ENSDARG00000059871

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00068003 False 4393 mRNA 0.45 14 40058757 40082053
TCONS_00068004 True 3884 mRNA 0.41 9 40070142 40082053

Neighbor

gene id symbol gene type direction distance location
XLOC_034964 grpel1 coding downstream 307217 39744244 ~ 39751540 (-)
XLOC_034963 ccdc96 coding downstream 320297 39730429 ~ 39738460 (-)
XLOC_034962 BX908792.1 coding downstream 342684 39715712 ~ 39716073 (-)
XLOC_034961 ptprja coding downstream 447648 39553046 ~ 39611109 (-)
XLOC_034960 slc22a18 coding downstream 506443 39537790 ~ 39552314 (-)
XLOC_034966 si:ch73-174h16.5 coding upstream 20338 40102391 ~ 40122139 (-)
XLOC_034967 wdr60 coding upstream 40865 40122918 ~ 40145097 (-)
XLOC_034968 dnajb6b coding upstream 454875 40536928 ~ 40578733 (-)
XLOC_034969 NA coding upstream 474983 40557036 ~ 40561701 (-)
XLOC_034970 ube3c coding upstream 501886 40583939 ~ 40630698 (-)
XLOC_034958 BX842701.1 non-coding downstream 617707 39437384 ~ 39441050 (-)
XLOC_034955 CABZ01033553.1 non-coding downstream 823645 39234995 ~ 39235112 (-)
XLOC_034953 CR356225.1 non-coding downstream 921983 39136650 ~ 39136774 (-)
XLOC_034952 CR382325.1 non-coding downstream 1078079 38978002 ~ 38980678 (-)
XLOC_034973 CU041319.3 non-coding upstream 784762 40866815 ~ 40884705 (-)
XLOC_034975 CU041319.2 non-coding upstream 866822 40948875 ~ 40949190 (-)
XLOC_034985 BX005319.3 non-coding upstream 1410964 41493017 ~ 41493131 (-)
XLOC_034988 NA non-coding upstream 1625487 41707540 ~ 41709193 (-)

Expression


Co-expression Network