XLOC_034968 (dnajb6b)


Basic Information

Item Value
gene id XLOC_034968
gene name dnajb6b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 40536928 ~ 40578733 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00068009
ATTAACGGCAGATCATTAACAGGGATACAGAGTCACTGAAACACACCTGCTCATCTCTGCCTTTCTAACAGGGAAGTTGTTCCAACCACCTGGGACTGTTTTATAAACGGACAGCGCTCGGACCAAACAGATTTCCAGCAGGAATAATaggttatatattaataaaaaactcGACCTTATCATTGGATACACCGCGAAGCTCCGAAACAGCTGTAATTAAAGAGACTTATCATTGTCACCGAAGGCCCACTGCTGAACATCAGTCTTCATCCCGTGGAGTGGAAACCCAAAACCTGAGCCATGGAGGAGGATTATTACCACATCCTTGGTGTCACGAAAAGCGCATCTCCTGACGATATAAAGAAAGCGTACAGAAAACTTGCACTAAAATGGCATCCAGACAAAAACCCCAATGACAAAGAGGAGGCGGAGAAAAGGTTCAAAGAAATCTCAGAAGCATATGAAGTCCTGTCAGATGAAAACAAACGGAGAGATTATGATAGATATGGTAAACAAGGCCTCTCTAATAGAGGTGGCCATTACGATGATGAATATATGGGTGGATTCACATTCCGTAACCCAGAAGACGTCTTCAGGGAATTTTTTGGAGGTCATGATCCATTTGCAGATTTCTTTGctgatGACACATTTGAAGGTTTCTTTGGTGGGCGCCGTCACAGAGGTATGAGCAGGAGCAGGACAGCAGGTCCATTCTTTCCTGGATTTTCTCCATTTGGTCCGTCCTTTTCTGGATTTGACACAGGGTTTTCTCCGTTCGGCCCAATGGGTGGAGGAAGCTTCAGCTCATTTTCATCGTCTCCATTTGGTGGTGGAGGTGGGATGAGAAACTTCACCTCCATTTCCACATCCACCAAATTCATCAACGGAAAGAGGATCACCACTAAACGTATTGTAGAGAACGGTCAAGAGAGAGTGGAGGTAGAGGAGGACGGTCAGCTCAAATCTCTCACAGTCAACGCTATTTCTGATGACTCTGAGGAAAGACGGAGACAGAACACTCTCTGTGGTCCTGCCCCACACAACCGATACCTCCGAAACGTGGCCCAGAACCCTTCAGaaaaggaggaggtggaggaggaggatagaggccTGCAGAATCTGGGAATTGCCAAAGggTTTTTTGACACCAGGAGAAAGAAGCTATCGCTGAAGGAGTCAGACACCAAAAAGAAGCGGACACCAAGACTCACTCCCCGGATTGGGGTGTGGTtctaatagtttttttatatgtatagttGTTTTTACTGTTCGTTTTCTAAAACCTTTAGAAAACTCTTTATATAGACATGCCTGTTGAATACTgtcacacaatattaattatttttcaatggCACACATATACAGagcctatagaaaatcatcataccctGTGAAAATCTTTACCTTAACTCACATTACATCTTGCTTTCAAAAGGCCTTCGGGAAACAGTTGTAGAAAGGCACAGGTTATaaggctacaaaaacatttcaaaggctaGAAACTGAAATGTgaaatgtgatttgatttcaggctgtATGACAAAGTTATTTTCAAAGTGGTGTGATAATTTTTTACAGGCACTATACCATTTTCTGAATGTTGTCAAATCATAGCCACAGTCACATCTGTAACAATTTTGTAactatttgaacattttaaagtcttTAATATTGGTTCTGTACAAAGTTCAATGGCAGAGTACTAAATTTGGAACAAACCAATTTTAATTTCACCAGCTAGTTTATCAACGTTGGTTACCTTCCTACATCTATCACCTTGCTAATTAGCACCAGTAGCAAATTAGCTCAGAGGGAAATATGAATAATTCATTATAAcatatgtgtgtatgtaatgTTCCCACATTTCTCAAGTGGTTAGAAATATAGGATTTTCTTTCATTCTAAAATCCTTGAGGTGATGAAAACAGCCTTATCTTTCAGATTTGTCCAGAGGTCTGATTCTGCCTGGGTGTTAGTATTGAACCAGCTTCCTCTGGCATCTAGTTTGCATGTTGAGTGAGGGGTATTATggattatttgttaaatataaaatctGATCTGTATCAGGGGCTACAATGCGCAATGAAGAAAAGGATCTTTAATTACCCTGAGCTGATGTATAATAAGCAATCCCACTGACTTTTGAACTTGTGCTGTGCATATTGTAGAACATTCCCTTcctgtgattttaaaaaaagagtcaGTTCATAAATGAGTCTAAACATAGCACTCATATGATAATTAGACCCaactgaaatatttatatattcacaTATTTAAACATTGAACAGATTTCTTCATTAGTATGAAGAAGTATTGGTTTGTCAAGTCTGTTTTCAGCACTTTGATACATTTTTGATGACAAACATAATGCATTATAAACATAAAAAGAGGCACATTAAAGTTTGCATGATAGCTTTACATTTGCTGCATTTTGTATTAAAGTAAATTTGGAATTTTCAGCAATATTTAAAAGTGTAACCATAGAAAAGTCCAATATAGGATTGCATGATGTAAAGATATTGGACACGTCAGAGTAGGTTTCTGAGATAGGAAAGTGAGAAGGACgacagaagaaaaagaaaggaaaaagagattttaattattcattcagcAATGTGAGAGAACACATTTTCACCAGTTCGTCTTTTGATCCAGTCTTAAGCACTGTATCAATATTTCAGAGAAAACTCCAGATGTGCACTGTCCTTTCAGAAGCGGGAGTATGGCTTTAATTTCAGCCCGACTCCTGCATGTATGTTTCATTTTGGTTTTTGATAGAAAATCTGTGCTGACTCACAGTTGCTATATTAAAAagggaaataaaaatgaattgaagaAACAAATAACTAGACAAACACATTTTTAGTAATGCATATTAAAAAGGTTCTACTCTGA
>TCONS_00068010
CTTTTCCGGAGATGAAAAAAGGTCCGGTAGTTTGAGAAGCAGCATCTGTCCCTTTTCTTCTCCTCTCTCCCCTTTAATTACACAACACAATAGCCACGAGATGTGCCCATAATCTGCACGCATAATCAGCCTCTCTTTTCTCTCTTCCGAGCCTCTATTCCGTACGCTAattcaatataaatgtaaattaacacgCGCAAAGAATAAAGAAATCTCAATCTATTTACATGACTAATCACAATAAATGCGTTCCACATGAAATATGAATGAATGCATCGCGATTATGGGGAAAAGGGGACGGTGGGTGTCAGGCAAGGAGCACTTTAGGAgctatttaaactttttttattttacagtatctGCACAGACACACTCTTGTGTTTATGGGCTGAGGGACAAGTGCCTGAAAGTGGCAGGCTATTTCTGATGACTCTGAGGAAAGACGGAGACAGAACACTCTCTGTGGTCCTGCCCCACACAACCGATACCTCCGAAACGTGGCCCAGAACCCTTCAGaaaaggaggaggtggaggaggaggatagaggccTGCAGAATCTGGGAATTGCCAAAGggTTTTTTGACACCAGGAGAAAGAAGCTATCGCTGAAGGAGTCAGACACCAAAAAGAAGCGGACACCAAGACTCACTCCCCGGATTGGGGTGTGGTtctaatagtttttttatatgtatag
>TCONS_00068011
AGGGTTTTCTCCGTTCGGCCCAATGGGTGGAGGAAGCTTCAGCTCATTTTCATCGTCTCCATTTGGTGGTGGAGGTGGGATGAGAAACTTCACCTCCATTTCCACATCCACCAAATTCATCAACGGAAAGAGGATCACCACTAAACGTATTGTAGAGAACGGTCAAGAGAGAGTGGAGGTAGAGGAGGACGGTCAGCTCAAATCTCTCACAGTCAACGCTATTTCTGATGACTCTGAGGAAAGACGGAGACAGAACACTCTCTGTGGTCCTGCCCCACACAACCGATACCTCCGAAACGTGGCCCAGAACCCTTCAGaaaaggaggaggtggaggaggaggatagaggccTGCAGAATCTGGGAATTGCCAAAGGTTTGTGTCCCAGCTGGATGTTATGCCTTTAGGCTTTACAGGCCAGAACCAGAAGAGCAGAGCTTTTTCATGCAGAGCTGATTCATAAAGATATTCAGTTTTGTATTTGTTCAAGGTTGCATCAGTGAGTCAGATATTAAAAGGTAAGATCTGCCAGTATGGTGGAGGTGGCGTCTACATGCTCGTGAAATTTGTTTCAGCAGGCAACTTTTTTGGCTTGCTTCTGACTGCTGGGAAAGTAGTTTAATGGAGAGCTCCGACAAACACATTCTAGTGGAGTTTTTGATTTAAAGTGATTGAATTCCTCCCTTCTGTGTCCTAGAGCCACAGTT
>TCONS_00068012
ATTAACGGCAGATCATTAACAGGGATACAGAGTCACTGAAACACACCTGCTCATCTCTGCCTTTCTAACAGGGAAGTTGTTCCAACCACCTGGGACTGTTTTATAAACGGACAGCGCTCGGACCAAACAGATTTCCAGCAGGAATAATaggttatatattaataaaaaactcGACCTTATCATTGGATACACCGCGAAGCTCCGAAACAGCTGTAATTAAAGAGACTTATCATTGTCACCGAAGGCCCACTGCTGAACATCAGTCTTCATCCCGTGGAGTGGAAACCCAAAACCTGAGCCATGGAGGAGGATTATTACCACATCCTTGGTGTCACGAAAAGCGCATCTCCTGACGATATAAAGAAAGCGTACAGAAAACTTGCACTAAAATGGCATCCAGACAAAAACCCCAATGACAAAGAGGAGGCGGAGAAAAGGTTCAAAGAAATCTCAGAAGCATATGAAGTCCTGTCAGATGAAAACAAACGGAGAGATTATGATAGATATGGTAAACAAGGCCTCTCTAATAGAGGTGGCCATTACGATGATGAATATATGGGTGGATTCACATTCCGTAACCCAGAAGACGTCTTCAGGGAATTTTTTGGAGGTCATGATCCATTTGCAGATTTCTTTGctgatGACACATTTGAAGGTTTCTTTGGTGGGCGCCGTCACAGAGGTATGAGCAGGAGCAGGACAGCAGGTCCATTCTTTCCTGGATTTTCTCCATTTGGTCCGTCCTTTTCTGGATTTGACACAGGGTTTTCTCCGTTCGGCCCAATGGGTGGAGGAAGCTTCAGCTCATTTTCATCGTCTCCATTTGGTGGTGGAGGTGGGATGAGAAACTTCACCTCCATTTCCACATCCACCAAATTCATCAACGGAAAGAGGATCACCACTAAACGTATTGTAGAGAACGGTCAAGAGAGAGTGGAGGTAGAGGAGGACGGTCAGCTCAAATCTCTCACAGTCAACGGTAAGGAGCAGTTACTCCGACTGGACAGCAAATGAACTGCAGATGAATGTTCGAAGCGGTTAAACCCAAACATTCCTAAGCATAACCAACCTTCCCAACCAGGCTGATGGCTACCAGTGCACCTGCTCTCCACTAGTCAGCAAACCAAGAGTAGGTAACATGAGCGTTTAGATGGTGCTGTTACCCTCAGTGCAGTGAATCGCAGAGGTAAACAGGGTGAAGTCTCATTCCAgcattttttcctttctttcttggGGACCATTTATTCCTTACAAAACCTCAGTTCGAACAAGCACACTCTATTCCCTTTCTGTCAGCTTTTCTTTCATCCATAAGTGCTTGAAACTGGAGCTTAACAGGTTGTGTTTGCTTTCTGCTGTAGAGCCGTTCAACTGTTCATATGTTGAAGTCTTAACCTCTCCATTCTGACATATTTAATATGATCTAACCAATGTAAGTAGTTgccatttgtttattatattagactgttaataaattattatgatttttatttggCTTTTCACCTAACTGTTGCATAGCCTGAGACCTTTCCATTGATCCGAACATACTGTTTATATACATTGTGTGAACTTATATGCTGGAAATTCTGTTCTTTCTaagaaaacaaataagcaaaGACAGACAAAGTTTCAGGTTTAATAAATTTCACTTTCACCTGTTTTGAATGCTGCACTCAGTGTTTTTGTGGTGCTTTTGGGAAACACAGATTTAACTCtaatttgtgtgtctgtgtgtgtgtgtgtgtgtatgtgtgtgtctttatCTTGGCCTGATGAACTGTACGTGTCTCATAACACTCACAAAATTAAAGACAGTAAAACTTT

Function

symbol description
dnajb6b Acts upstream of or within several processes, including myofibril assembly; negative regulation of response to endoplasmic reticulum stress; and skeletal muscle organ development. Located in nuclear envelope. Is expressed in Purkinje cell; heart; lens; and solid lens vesicle. Human ortholog(s) of this gene implicated in autosomal dominant limb-girdle muscular dystrophy type 1 and distal spinal muscular atrophy type 5. Orthologous to several human genes including DNAJB6 (DnaJ heat shock protein family (Hsp40) member B6).

GO:

id name namespace
GO:0007519 skeletal muscle tissue development biological_process
GO:0016203 muscle attachment biological_process
GO:0030239 myofibril assembly biological_process
GO:0007626 locomotory behavior biological_process
GO:1903573 negative regulation of response to endoplasmic reticulum stress biological_process
GO:0005635 nuclear envelope cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1122 Acts upstream of or within several processes, including myofibril assembly; negative regulation of response to endoplasmic reticulum stress; and skeletal muscle organ development. Located in nuclear envelope. Is expressed in Purkinje cell; heart; lens; and solid lens vesicle. Human ortholog(s) of this gene implicated in autosomal dominant limb-girdle muscular dystrophy type 1 and distal spinal muscular atrophy type 5. Orthologous to several human genes including DNAJB6 (DnaJ heat shock protein family (Hsp40) member B6).

Ensembl:

ensembl_id ENSDARG00000020953

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00068009 False 2898 mRNA 0.39 10 40536928 40578733
TCONS_00068010 False 694 processed_transcript 0.45 3 40538570 40551054
TCONS_00068011 False 706 lncRNA 0.47 3 40541296 40561374
TCONS_00068012 True 1824 mRNA 0.42 8 40560141 40578733

Neighbor

gene id symbol gene type direction distance location
XLOC_034967 wdr60 coding downstream 391831 40122918 ~ 40145097 (-)
XLOC_034966 si:ch73-174h16.5 coding downstream 414789 40102391 ~ 40122139 (-)
XLOC_034965 shrprbck1r coding downstream 454875 40058757 ~ 40082053 (-)
XLOC_034964 grpel1 coding downstream 785388 39744244 ~ 39751540 (-)
XLOC_034963 ccdc96 coding downstream 798468 39730429 ~ 39738460 (-)
XLOC_034970 ube3c coding upstream 5206 40583939 ~ 40630698 (-)
XLOC_034971 nom1 coding upstream 66036 40644769 ~ 40657831 (-)
XLOC_034972 rnf32 coding upstream 137023 40715756 ~ 40738774 (-)
XLOC_034973 CU041319.3 coding upstream 288082 40866815 ~ 40884705 (-)
XLOC_034974 rbm33a coding upstream 321479 40900212 ~ 40959867 (-)
XLOC_034962 BX908792.1 non-coding downstream 820855 39715712 ~ 39716073 (-)
XLOC_034958 BX842701.1 non-coding downstream 1095878 39437384 ~ 39441050 (-)
XLOC_034955 CABZ01033553.1 non-coding downstream 1301816 39234995 ~ 39235112 (-)
XLOC_034953 CR356225.1 non-coding downstream 1400154 39136650 ~ 39136774 (-)
XLOC_034952 CR382325.1 non-coding downstream 1556250 38978002 ~ 38980678 (-)
XLOC_034975 CU041319.2 non-coding upstream 370142 40948875 ~ 40949190 (-)
XLOC_034985 BX005319.3 non-coding upstream 914284 41493017 ~ 41493131 (-)
XLOC_034988 NA non-coding upstream 1128807 41707540 ~ 41709193 (-)
XLOC_034995 NA non-coding upstream 1399655 41978388 ~ 41980012 (-)

Expression


Co-expression Network