XLOC_034995


Basic Information

Item Value
gene id XLOC_034995
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 41978388 ~ 41980012 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00068691
cagttgtagttttgttTCTGCATATTAACAGCATGTATTCATTATCAGTGCTTAATTATCACTCAATTAATTCCTTCGTTgactcattaactttaactctgctgctgagcAACTTTTAATGAGTTTAAAGAGTGACCAAATACTTTCTGAGTCAATTATcttcagaggattttgctgtgtagaaatttccaggcaggtgtgttaaaggaagtttaagctaaactgtgcaggacaccgtcCCTCCAGGACCTAGTTTGGACACCTTTGGTTTACATGATCCGTATGCTGATGATACACTGGGCaacattttgaggaatgttgctGTGCAACTTTGGGAAATGTTGCCATCAATTGGCAACCAGATGGTCAATTAATTAAGCCAATGAGAAACCGATACAATATGGGAACCTATTCTCAACAGGAAAGCAGCCAAGCAACCATTCTCATCAACATTGCTCAAAATGTTGCCATGTGAGTTTATCATCAGAATTAAAGCATTATAGTGTTTGCACATTGGCGAGAAATGAAAGTGTTGCCATTTATTTCCACTTTGGTTTGGCATAAACATGTTATTTTAAAACTCTTTCCGTGCTGTTAAAGTAACAGAGAAATGTCAAGCAGGCAGGAACAGAACCAGTAATTTTCTCTctttgtcttgtttgttttaagtttcgtgttgtgtgttgtgtgttttgaaggacttaattagttgtCGGCCTTTCTGTGTATGGATGTGACTGCGTGATAGTTCTTTCACTTCACTCAACCCATTAACTAAACAAATGCTTTGAATCTAAGCGCTAAATGAGGCTCTCTTTTAACAAAGGTGTCCTTTGTAAACTGACTGTATCAAACATTTAGCTGTATGGAACCAAAAACGGTTATTAATCACTCTTCTGTGGTAAAGAATTACTTTAACAATCAACACTCTGTGCCAACCACTTCCAAATGGTTCCCTGGAAAGTTCAGCGCTTCTATAGGATGTCAAGTCTCCACAACCTAATTGCTCATTGTGCTCTGTTTCTGCATGCACTGCCCTCTAAAAATGTCCCCTGTGTCTGTCTTCCTTCTGATTGTAAAGGCACTGTTATCAATACTTAAACTGGGTGGTTTTTCCATAGTCACTGATGCCTTTAGGTATTTTTCCTTTATTTCAAAGTGgtgatatttatttcttttacctgttttttttttttttaaacactggaAATTAATTATGAGCTGCTGAAGAATGTTCAATGTGAAGGCTTTTGTTCTTAGCTGTAAATATCTGACAGCTGCTCTGATCCATGCAATTATTTATATGCTAATTTCCTTTACCTTTATATGGTGTTGTTATGGTGCAATATATGCACATTAATTAAGTGGTTTCGAGTCAGAATCAATTGTAAAACCACCAATAATGCAACTGCGCACTAGACTAGCATGTAAATTGGCATGCAATTCTTGCAGATGGTTTTCACATGTTGTTTCTGAACAGGTACATATTGGTCCTAACAGGTTGTACATCTGTGctttcttttaattattaatgaacCACTCTCAACATGTTCTTGGTTGCCGTTTGTCACTAGATGTCTTTTTGAATGTTGTATTGAAAATAAACATGACCAAATGCTTTATTA

Function

GO:

id name namespace
GO:0006906 vesicle fusion biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:1902600 proton transmembrane transport biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0006396 RNA processing biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0034622 cellular protein-containing complex assembly biological_process
GO:0090174 organelle membrane fusion biological_process
GO:0000245 spliceosomal complex assembly biological_process
GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain cellular_component
GO:0005484 SNAP receptor activity molecular_function
GO:0019829 ATPase-coupled cation transmembrane transporter activity molecular_function
GO:0017075 syntaxin-1 binding molecular_function
GO:0022853 active ion transmembrane transporter activity molecular_function
GO:0044769 ATPase activity, coupled to transmembrane movement of ions, rotational mechanism molecular_function
GO:0000149 SNARE binding molecular_function
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism molecular_function
GO:0005212 structural constituent of eye lens molecular_function
GO:0003723 RNA binding molecular_function
GO:0042625 ATPase-coupled ion transmembrane transporter activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00068691 True 1625 lncRNA 0.37 1 41978388 41980012

Neighbor

gene id symbol gene type direction distance location
XLOC_034994 neto2b coding downstream 10217 41947739 ~ 41968171 (-)
XLOC_034993 dnaja2a coding downstream 61883 41903540 ~ 41916505 (-)
XLOC_034992 C7H16orf87 coding downstream 97150 41873080 ~ 41881238 (-)
XLOC_034991 mylk3 coding downstream 119875 41821311 ~ 41858513 (-)
XLOC_034990 vps35 coding downstream 166033 41757462 ~ 41812355 (-)
XLOC_034996 itfg1 coding upstream 1354 41981366 ~ 42206720 (-)
XLOC_034997 CR759753.1 coding upstream 173398 42153410 ~ 42153524 (-)
XLOC_034998 CR847539.1 coding upstream 310966 42290978 ~ 42291094 (-)
XLOC_034999 NA coding upstream 374095 42354107 ~ 42355980 (-)
XLOC_035000 NA coding upstream 387733 42367745 ~ 42369924 (-)
XLOC_034988 NA non-coding downstream 269195 41707540 ~ 41709193 (-)
XLOC_034985 BX005319.3 non-coding downstream 485257 41493017 ~ 41493131 (-)
XLOC_034975 CU041319.2 non-coding downstream 1029198 40948875 ~ 40949190 (-)
XLOC_034973 CU041319.3 non-coding downstream 1093683 40866815 ~ 40884705 (-)
XLOC_034969 NA non-coding downstream 1416687 40557036 ~ 40561701 (-)
XLOC_035001 CU570782.2 non-coding upstream 406521 42386533 ~ 42388353 (-)

Expression


Co-expression Network