XLOC_034996 (itfg1)


Basic Information

Item Value
gene id XLOC_034996
gene name itfg1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 41981366 ~ 42206720 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00068068
ATGTTGCTGtcatttgcttgttttttgaCGTTATTATCAAGTTTTGTCGGACAACACGTCACGTTTGCATTGCAGGACGTTACTAGCGATTTATTTGGCCAGGAAAACAATGGTACAGTAGCGGCTTTCGGTGACTTTAACTCTGATAAACAGACTGACATTTTCATCATCAGGAAGCAATCTGAGCTGTTGATTTTCTTGGCTGATCTTAAAGCACCTTATTTCAAACCTAAAGTCCATCTGACTAAAGAGGTTTTCCCTAGTGACTTCATCATAAGCAGTGTGGTGCCGGGTGATTACGATGGAGATTCTCAGATGGATGTGCTTCTCACTGGCCACTTAAATGGCTCCCCTTTACAAACAAGCGTCTTCGTCTTCTGGGGACGTAACCAGACTTTAGACCAAAATAAAAAGGAGAAGCTGGACAAGATCTTTACTGATCAGCCTCTTGTAATGGACTTTGATGGGGACATGATCCCAGATATTTTTGGAACTGTGGATGGCTCGTTGGAGGTTTGCTATCTAAAGGCGAGACAACAAAGATGTGAGAAGGCTCTCAACTCCACAGTTGCAATGCGCATCCCTCATTCCCATGCTTTCATCGACCTTAACAAGGACTTCACTGCTGatttgttccTCACCACCACATCAAATGAATTCGAGACCTGGATTAATAAGGATGGGAACTTCACCAAAGCCCCGTCTGGACCTTCTCTGGAGAATGTGAAGAGAGTGGGTCAATCTGCATTCGTAGACTTCGACGGTGATGGCTTCCAGGACCACCTGTTGCCGGTGTGTATGGACGATGCGTGTGCTAAAAGTGCAATATACCTGGCCAGGCCTGGGGGGACAAAGTGGGTGCCTGTGTTGATGGACTTCAAGAGGAAGGATTCTGTGTGGGGTTTTGTGCCCGCTCCAGAAAAGCCCACTTCGGAAGAACTGCGAATTCCCATCACCCTGCACCTCGGAGACTACAACTTGGATGGCTTTCCTGATGCCCTTGTGATCCTCCGTAACACCAGCGCCAGTTCACAGCAGCAGGCGTTCCTGCTGGAGAACGTGGCTTGTAACGACGCGAGCTGTCAGGAGGCTGAACGCATGTTTCGTGTGCATTGGGAGCAGTCGGACCTCAGTGCAATCCCCAGGGCTGTTGTGGCCACTTTTTTTGACATCTATGAGGACGGTATATTAGATATGATCGTGCTCAGCAAGGTGGAAGGGAAAGAAGAACTCGTCATCCACGCTTTGAAGAACAACTTTGAGGCCGACGCGTATTTCGTGAAAGTCATCGTGCTCAGTGGCCTGTGCTCCAATGACTGTCCAGAAAAAGTCAAGCCCTTTGGTGTGAACCAGCCTGGCCCGTATGTCATGTACACATCGGTGGACTCGAACGGTTATCTAAAGAACGCTTCTGCGGGGCAGCTCAGCCAGTCTGCTCATCTGGCTCTCCAGCTGCCCTACACCGTGCTCGGTCTGGGGCGCAGCGCCAACTTCCTGGATCACCTGTTTGTGGGCATCCCCCGGCCCCCTGGAGGGAAGGATGTGAGGAAGCAGGAGTGGACTGCTATTATTCCTAACTCCCAGCTCATCGTTATACCATATCCACAAAATGAACCTcgcagCTGGAGTGCAAAGCTCTACTTAACCCCGAGTAATATAGTCTTATTGACAGCGATAGCACTGATTGGCGTGTGCATCTTTATTCTCGTCATCATCGGGATACTGCACTGGCAGGAGAAGAAAGCTGATGACCGGGAGAAAAGACAAGAGGCCCATCGCTTCCATTTCGACGCCATGTGA

Function

symbol description
itfg1 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human ITFG1 (integrin alpha FG-GAP repeat containing 1).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko04147 Exosome

ZFIN:

id description
ZDB-GENE-121003-3 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human ITFG1 (integrin alpha FG-GAP repeat containing 1).

Ensembl:

ensembl_id ENSDARG00000075584

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00068068 True 1800 mRNA 0.49 18 41981366 42206720

Neighbor

gene id symbol gene type direction distance location
XLOC_034995 NA coding downstream 1354 41978388 ~ 41980012 (-)
XLOC_034994 neto2b coding downstream 13195 41947739 ~ 41968171 (-)
XLOC_034993 dnaja2a coding downstream 64861 41903540 ~ 41916505 (-)
XLOC_034992 C7H16orf87 coding downstream 100128 41873080 ~ 41881238 (-)
XLOC_034991 mylk3 coding downstream 122853 41821311 ~ 41858513 (-)
XLOC_034998 CR847539.1 coding upstream 84258 42290978 ~ 42291094 (-)
XLOC_034999 NA coding upstream 147387 42354107 ~ 42355980 (-)
XLOC_035000 NA coding upstream 161025 42367745 ~ 42369924 (-)
XLOC_035001 CU570782.2 coding upstream 179813 42386533 ~ 42388353 (-)
XLOC_035002 BX284620.2 coding upstream 605335 42812055 ~ 42812169 (-)
XLOC_034988 NA non-coding downstream 272173 41707540 ~ 41709193 (-)
XLOC_034985 BX005319.3 non-coding downstream 488235 41493017 ~ 41493131 (-)
XLOC_034975 CU041319.2 non-coding downstream 1032176 40948875 ~ 40949190 (-)
XLOC_034973 CU041319.3 non-coding downstream 1096661 40866815 ~ 40884705 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000026_13082079_13210565 ITFG1 coding CI01000026 null 13082079 ~ 13210565 (-)