XLOC_034990 (vps35)


Basic Information

Item Value
gene id XLOC_034990
gene name vps35
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 41757462 ~ 41812355 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00068052
TCGAAGCGacgttaaattattttattgtcattagATGCTAACCGAATGTTGTTCAGAGAAACTATTATTTTCTAAATACAATTTACCTCAGTTATTATTCTATAATGACACAACGCAGCTAATTTTACTATTATggatacataaataataattctcaGTATTGTTTCTAGAGGGTTTTAAAGACGGATAATACAGCTTTTATGTCTTGTGATGTGTGCGGGCAGCGCTCGTCATGAGGCGGAACAGCAGCAGTCACATGATACGACACATTCACAGGGGGGTCATCCAGTATTTCCTCTAACATACCTGATAATCATGCCCACCACACAGCAGTCGCCGCAGGATGAGCAGGAGAAACTGCTGGATGAAGCTGTGCAGGCAGTCAAGGTTCAGTCATTTCAAATGAAGCGCTGTCTGGACAAGAACAAGCTGATGGATGCACTGAAACATGCCTCAAATATGCTGGGGGAGTTGAGGACGTCCATGCTCTCTCCTAAGAGCTATTATGAACTCTATATGGCCATTTCAGATGAGCTGCATTACCTGGAGGTGTATTTGACTGACGAGTTTGCCAAAGGTCGCAAAGTGGCTGATCTCTATGAGCTTGTTCAGTATGCAGGGAACATCATCCCTCGACTGTACTTGTTGATAACTGTTGGAGTGGTGTACGTTCGCTCTTTCCCCCAGTCCCGCAAAGACATACTGAAGGACCTGGTGGAGATGTGTCGCGGGGTGCAGCATCCACTGCGTGGCCTTTTTCTCAGAAACTACCTGCTGCAATGCACGCGCAACATCCTGCCAGATGACGGAGAACAGGCCGAGGAAGAGATGACCGGAGACATTAATGACTCCATTGACTTTGTGCTGCTGAATTTTGCGGAGATGAATAAACTGTGGGTGCGAATGCAGCATCAGGGACACAGCAGGGACcgagaaaagagagagaaagagaggcaaGAGCTGCGCATCCTCGTTGGAACTAATCTGGTCCGCCTGAGCCAGCTGGAAGGCGTCAATGTGGAAAagtacaaacagATCGTGCTGTCTGGGGTCTTGGAGCAGGTGGTGAACTGTAGAGACTCTCTAGCACAGGAATACCTCATGGAGTGCATCATACAGGTCTTTCCGGATGAGTTCCACCTGCAGACATTGAACCCGTTCCTTCGTTCCTGTGCCGAGCTGCACCAAAACGTGAATGTCAAGAACATCATCATCGCTCTTATTGATAGATTGGCCCTGTTTGCTCACAGAGAAGATGGACCTGGAATCCCTGCTGAAATCAAGTTATTTGATATTTTCTCACAGCAAGTGGCAACTGTCATACAGTCTCGTCAGGACATGCCCTCTGAAGATGTTGTTTCACTCCAAGTGTCTCTCATCAATCTGGCCATGAAGTGCTATCCTGACCGTGTGGATTATGTGGATAAAGTGTTGGAAAGCACTGTGGAGATTTTCAACAAGCTGAACCTGGAACACATTGCCACCAGCAGCGCGGTGTCTAAAGAACTGACCAGGCTACTAAAGATCCCTGTGGACACGTACAATAATATCCTAACTGTGCTCCAGCTCAAGCATTTCCCTCCGCTCTTCGAGTACTTCGATTATGAGTCACGCAAAAGCATGAGCTGCTACGTGCTGAGCAACATTCTGGACTACAACACCATAATCGTGGCCCAAGATCAGGTCGATGCGATCCTGAACCTGGTGTCTACGCTGATCCAGGACCAGCCTGATCAGCCTGCTGAGGATCCGGACCCAGAGGACTTTGCAGAGGAACAGAGCCTAGTGGGCCGCTTCATTCATCTGCTGCATTCAGACGACCCTGACCAGCAGTATCTGATTTTAAACACTGCCAGGAAACACTTTGGCGCTGGAGGGAACCAGAGGATTCGCCACACTCTTCCCCCGCTGGTGTTCGCTGCGTATCAACTGGCCTTTCGTTACAAAGAGAACTCCTCCTCAGATGATAAATGGGAAAAGAAATGTCAGAAGATTTTCTCATTCGCCCATCAGACCATCAGTGCTCTGATCAAAGCTGAGCTGGCCGAGTTACCCTTAAGGCTCTTCCTCCAGGGCGCTCTGGCGGCAGGCGAGATCGGCTTTGAAAACCATGAAACTGTGGCCTACGAGTTCATGTCTCAGGCATTTTCTCTGTATGAAGATGAGATAAGCGATTCCAAGGCACAGCTGGCCGCCATTACGCTGATCATTGGCACGTTTGAACGCACACGGTGCTTCAGCGAAGAGAACCATGAGCCCCTTCGTACCCAGTGTGCTCTGGCGGCCTCCAAACTGCTGAAGAAGCCCGATCAGTGCCGTGCAGTCAGCATCTGTGCCCACCTTTTCTGGTCAGGACGCAACACTGACAAAGGAGGAGATGAGattcgTGATGGACGTAGGGTGATGGAATGCTTGAAGAAGGCTCTGAAGATTGCCAACCAGTGCATGGACCCGTCCTTGCAAGTCCAGCTCTTCATCGAGATCCTCAACAGATACATCTGCTTCTATGAGCGAGAGAATGATGCGGTGACGGTCCAGGTCCTGAATCAGCTGATCCAGAAGATCCGTGAAGATCTCCCGAACCTGGAGGCCAGCGAGGAGACGGAGCAGATCAACAAACACTTCCACAACACACTGGAGCACCTGCGTCTGCAGAGAGAGTCGCCCGAGTCTGAGGGACCTGCTTACGAAGGGCTGGTGCTGTAGGTGCCTCACACATccacatttatatttgtgtacacacacacacacacacacacgtatatagaGAGATTTATGTATATGCCCACATGTGCACACCAGGGTATTCCAGCCAGGGGAAAAAAACGAAGCCAAACCCACCTGCCTCTCTGCTCATTTCTCATTTCTCATACTTTTCAGTCGGTTGTTTTCGTCCTCTGCCCTCTGCCTCTGTCTTACTGATTTTTGTGAGGCGTTTTCTTGTGAATTCCTTAGAGAACAATTTATGCACTGCACTCCTACTCCGCGCTTCCTTCAAACTGCCATTCcctattaataatattgttgcCATACAAATGagcaagagtaaaaaaaaatacatatttaagagAGAAATATAACCGTTCTAGTGTTGCTACAGCACTTCTTTGTCCCGCTGGCCAAACTGGAGCAAAAATGCAGAACTTTTATTGAGCCACGCATTGTTCAAGTCTTCAATTAGAGGACCTACACTTGATtctgtttgtctttttgttttgtttcagcattaatattttaaaagctgtgCTAAGTTAAACACATTCGTGTAACTAATGAATAGTCCTGTTTCTCAACCTTTTACTTTCACGGCAGACACTTAGGTGGAGTGGGACAGTGTGTTGACTAATATGTGGAATGGTTGAACGTGTATAGACTCTATTAATGAATGAGTAGCTGTGGCTGTGAATCCAAACCAATGTCCGAAGCCTTCTCTTGCATCTTGTTTCCCTTTTTTTGAAATTATGACTCCCCCTCCCTTCATGTATTGTATGTATAATCTAATTGTAAATCAGTTACAACAAAATATCATTGATTTCATGGcatttgcacaaataaaaaaatgttaacccCACA
>TCONS_00068053
AACACATAACCCCAGAAGCTGAAGAGTACAGCTCTTCaagattaaatgaaataatttgagGTTGTTCAGCAATCGATaatagaatcttttttttttttttccagattcgTGATGGACGTAGGGTGATGGAATGCTTGAAGAAGGCTCTGAAGATTGCCAACCAGTGCATGGACCCGTCCTTGCAAGTCCAGCTCTTCATCGAGATCCTCAACAGATACATCTGCTTCTATGAGCGAGAGAATGATGCGCGCTAGATTATACCTAACTCACACTCATCTGAAAGGAGCCGTTTGTATCCATGTTCAATTTGGGGGCAGATTGAGTCAGGACTTGCTGGAGCACATCAAGGGCACAGGGCGAAGAGGACTAAGAGGAAGCACAAACAAACACGCACGCAGTTTAAGTCAAAGTGGAGCTGTCAGTCGTCTGACTTATTACTGAGGTCGCTCTTGACATCTGAGCTCCATCCAGGAGCAAGGGTCTCTTGGAATTGTGAGagtcaaaacataaaacaaattccCAAGCTGCATTTCATTGACGCATTACTTCTCAGTGTTTGTTCTGTAGCAATCAGGTTTCCCACGCGTCCTGGAAAACCTGGAAATCATGGAAAATTAGAGAAAATATAAATCACGCTTGTAAAATC
>TCONS_00068054
CTCCTCAGATGATAAATGGGAAAAGAAATGTCAGAAGATTTTCTCATTCGCCCATCAGACCATCAGTGCTCTGATCAAAGCTGAGCTGGCCGAGTTACCCTTAAGGCTCTTCCTCCAGGGCGCTCTGGCGGCAGGCGAGATCGGCTTTGAAAACCATGAAACTGTGGCCTACGAGTTCATGTCTCAGGTAGAGAATCATTCTAATATAATTCCTGTTCATTATCAAGATAAGTACTCTCTGCCGATTCCTTTATCTCATAATCATCATTATTCACAATGAAATGGTAATGTCCTTAGAGGAAGACTAGCTCATCGAAATATTGCACTTATTCTCACACCCCAGCAGAATTTTTTAGGAAGTTCTTCTCAATCTTGCGTCTGTGTGTCCCAAGGCATTTTCTCTGTATGAAGATGAGATAAGCGATTCCAAGGCACAGCTGGCCGCCATTACGCTGATCATTGGCACGTTTGAACGCACACGGTGCTTCAGCGAAGAGAACCATGAGCCCCTTCGTACCCAGTGTGCTCTGGCGGCCTCCAAACTGCTGAAGAAGCCCGATCAGTGCCGTGCAGTCAGCATCTGTGCCCACCTTTTCTGGTCAGGACGCAACACTGACAAAGGAGGAGATGAGattcgTGATGGACGTAGGGTGATGGAATGCTTGAAGAAGGCTCTGAAGATTGCCAACCAGTGCATGGAC
>TCONS_00068055
CGCATACTTGATGGATGCTTTATATGCGCCCTTGAGTTGTTTATACCCATGATGTTGTCAGAGGGACACTGGGATCTCTTGATTTAGTTAGCTATTTTGCGTCTGTGAAGATGGCGTTAGCATTAGCGTCAGAGATGCGGAGGCCTACATGCACATAATTATTCTCATTTTTCTGCTCTCTTATGTTTATTCTGCAAGCGGTTCAGTATTCGATCTGCAGCCCACCACACAGCAGTCGCCGCAGGATGAGCAGGAGAAACTGCTGGATGAAGCTGTGCAGGCAGTCAAGGTTCAGTCATTTCAAATGAAGCGCTGTCTGGACAAGAACAAGCTGATGGATGCACTGAAACATGCCTCAAATATGCTGGGGGAGTTGAGGACGTCCATGCTCTCTCCTAAGAGCTATTATGAACTCTATATGGCCATTTCAGATGAGCTGCATTACCTGGAGGTGTATTTGACTGACGAGTTTGCCAAAGGTCGCAAAGTGGCTGATCTCTATGAGCTTGTTCAGTATGCAGGGAACATCATCCCTCGACTGTACTTGTTGATAACTGTTGGAGTGGTGTACGTTCGCTCTTTCCCCCAGTCCCGCAAAGACATACTGAAGGACCTGGTGGAGATGTGTCGCGGGGTGCAGCATCCACTGCGTGGCCTTTTTCTCAGAAACTACCTGCTGCAATGCACGCGCAACATCCTGCCAGATGACGGAGAACAGGCCGAGGAAGAGATGACCGGAGACATTAATGACT
>TCONS_00068056
TCGAAGCGacgttaaattattttattgtcattagATGCTAACCGAATGTTGTTCAGAGAAACTATTATTTTCTAAATACAATTTACCTCAGTTATTATTCTATAATGACACAACGCAGCTAATTTTACTATTATggatacataaataataattctcaGTATTGTTTCTAGAGGGTTTTAAAGACGGATAATACAGCTTTTATGTCTTGTGATGTGTGCGGGCAGCGCTCGTCATGAGGCGGAACAGCAGCAGTCACATGATACGACACATTCACAGGGGGGTCATCCAGTATTTCCTCTAACATACCTGATAATCATGCCCACCACACAGCAGTCGCCGCAGGATGAGCAGGAGAAACTGCTGGATGAAGCTGTGCAGGCAGTCAAGGTTCAGTCATTTCAAATGAAGCGCTGTCTGGACAAGAACAAGCTGATGGATGCACTGAAACATGCCTCAAATATGCTGGGGGAGTTGAGGACGTCCATGCTCTCTCCTAAGAGCTATTATGAACTCTATATGGCCATTTCAGATGAGCTGCATTACCTGGAGGTGTATTTGACTGACGAGTTTGCCAAAGGTCGCAAAGTGGCTGATCTCTATGAGCTTGTTCAGTATGCAGGGAACATCATCCCTCGACTGTGAGTATCAAAAGTCTCTTTTCAGGAAAGTCTGTTCACTCAGTGACCATATTTGCAACGCCTCCAGGCAGCTATTTTGGGCATACAGATTCAAGTCCTATATGTTTCAATAGAGTGCATTAGAG

Function

symbol description
vps35 Predicted to be involved in intracellular protein transport and retrograde transport, endosome to Golgi. Predicted to act upstream of or within protein transport. Predicted to be located in membrane. Predicted to be part of retromer complex. Predicted to be active in late endosome. Human ortholog(s) of this gene implicated in Parkinson's disease and Parkinson's disease 17. Orthologous to human VPS35 (VPS35 retromer complex component).

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0042147 retrograde transport, endosome to Golgi biological_process
GO:0015031 protein transport biological_process
GO:0005770 late endosome cellular_component
GO:0030904 retromer complex cellular_component
GO:0030906 retromer, cargo-selective complex cellular_component

KEGG:

id description
ko04144 Endocytosis
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-030131-2042 Predicted to be involved in intracellular protein transport and retrograde transport, endosome to Golgi. Predicted to act upstream of or within protein transport. Predicted to be located in membrane. Predicted to be part of retromer complex. Predicted to be active in late endosome. Human ortholog(s) of this gene implicated in Parkinson's disease and Parkinson's disease 17. Orthologous to human VPS35 (VPS35 retromer complex component).

Ensembl:

ensembl_id ENSDARG00000008224

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00068052 False 3573 mRNA 0.47 17 41757462 41812355
TCONS_00068053 False 646 lncRNA 0.43 2 41764304 41765104
TCONS_00068054 False 701 lncRNA 0.47 3 41764932 41777228
TCONS_00068055 False 752 mRNA 0.48 6 41791522 41812015
TCONS_00068056 True 763 lncRNA 0.42 4 41805086 41812355

Neighbor

gene id symbol gene type direction distance location
XLOC_034989 arl8 coding downstream 11035 41713920 ~ 41746427 (-)
XLOC_034988 NA coding downstream 48269 41707540 ~ 41709193 (-)
XLOC_034987 malrd1 coding downstream 64458 41632928 ~ 41693004 (-)
XLOC_034986 plxdc2 coding downstream 129506 41517173 ~ 41627956 (-)
XLOC_034984 NFX1 coding downstream 244463 41491493 ~ 41512999 (-)
XLOC_034991 mylk3 coding upstream 8956 41821311 ~ 41858513 (-)
XLOC_034992 C7H16orf87 coding upstream 60725 41873080 ~ 41881238 (-)
XLOC_034993 dnaja2a coding upstream 91185 41903540 ~ 41916505 (-)
XLOC_034994 neto2b coding upstream 135384 41947739 ~ 41968171 (-)
XLOC_034995 NA coding upstream 166033 41978388 ~ 41980012 (-)
XLOC_034985 BX005319.3 non-coding downstream 264331 41493017 ~ 41493131 (-)
XLOC_034975 CU041319.2 non-coding downstream 808272 40948875 ~ 40949190 (-)
XLOC_034973 CU041319.3 non-coding downstream 872757 40866815 ~ 40884705 (-)
XLOC_034969 NA non-coding downstream 1195761 40557036 ~ 40561701 (-)
XLOC_034997 CR759753.1 non-coding upstream 341055 42153410 ~ 42153524 (-)
XLOC_034998 CR847539.1 non-coding upstream 478623 42290978 ~ 42291094 (-)
XLOC_034999 NA non-coding upstream 541752 42354107 ~ 42355980 (-)
XLOC_035000 NA non-coding upstream 555390 42367745 ~ 42369924 (-)

Expression


Co-expression Network