RNA id: TCONS_00068056


Basic Information

Item Value
RNA id TCONS_00068056
length 763
lncRNA type retained_intron
GC content 0.42
exon number 4
gene id XLOC_034990
representative True

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 41757462 ~ 41812355 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCGAAGCGacgttaaattattttattgtcattagATGCTAACCGAATGTTGTTCAGAGAAACTATTATTTTCTAAATACAATTTACCTCAGTTATTATTCTATAATGACACAACGCAGCTAATTTTACTATTATggatacataaataataattctcaGTATTGTTTCTAGAGGGTTTTAAAGACGGATAATACAGCTTTTATGTCTTGTGATGTGTGCGGGCAGCGCTCGTCATGAGGCGGAACAGCAGCAGTCACATGATACGACACATTCACAGGGGGGTCATCCAGTATTTCCTCTAACATACCTGATAATCATGCCCACCACACAGCAGTCGCCGCAGGATGAGCAGGAGAAACTGCTGGATGAAGCTGTGCAGGCAGTCAAGGTTCAGTCATTTCAAATGAAGCGCTGTCTGGACAAGAACAAGCTGATGGATGCACTGAAACATGCCTCAAATATGCTGGGGGAGTTGAGGACGTCCATGCTCTCTCCTAAGAGCTATTATGAACTCTATATGGCCATTTCAGATGAGCTGCATTACCTGGAGGTGTATTTGACTGACGAGTTTGCCAAAGGTCGCAAAGTGGCTGATCTCTATGAGCTTGTTCAGTATGCAGGGAACATCATCCCTCGACTGTGAGTATCAAAAGTCTCTTTTCAGGAAAGTCTGTTCACTCAGTGACCATATTTGCAACGCCTCCAGGCAGCTATTTTGGGCATACAGATTCAAGTCCTATATGTTTCAATAGAGTGCATTAGAG

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0042147 retrograde transport, endosome to Golgi biological_process
GO:0015031 protein transport biological_process
GO:0005770 late endosome cellular_component
GO:0030904 retromer complex cellular_component
GO:0030906 retromer, cargo-selective complex cellular_component

KEGG:

id description
ko04144 Endocytosis
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-030131-2042 Predicted to be involved in intracellular protein transport and retrograde transport, endosome to Golgi. Predicted to act upstream of or within protein transport. Predicted to be located in membrane. Predicted to be part of retromer complex. Predicted to be active in late endosome. Human ortholog(s) of this gene implicated in Parkinson's disease and Parkinson's disease 17. Orthologous to human VPS35 (VPS35 retromer complex component).

Ensembl:

ensembl_id ENSDART00000138800

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00068054 lncRNA downstream 27858 41764932 ~ 41777228 (-) False XLOC_034990
TCONS_00068053 lncRNA downstream 39982 41764304 ~ 41765104 (-) False XLOC_034990
TCONS_00068690 lncRNA downstream 95893 41707540 ~ 41709193 (-) True XLOC_034988
TCONS_00068048 lncRNA downstream 177179 41574545 ~ 41627907 (-) True XLOC_034986
TCONS_00068045 lncRNA downstream 306998 41496364 ~ 41498088 (-) True XLOC_034984
TCONS_00068061 lncRNA upstream 63492 41875847 ~ 41881168 (-) True XLOC_034992
TCONS_00068691 lncRNA upstream 166033 41978388 ~ 41980012 (-) True XLOC_034995
TCONS_00068692 lncRNA upstream 541752 42354107 ~ 42355980 (-) True XLOC_034999
TCONS_00068693 lncRNA upstream 555390 42367745 ~ 42369924 (-) True XLOC_035000
TCONS_00068071 lncRNA upstream 574178 42386533 ~ 42388353 (-) True XLOC_035001
TCONS_00068051 mRNA downstream 58659 41716085 ~ 41746427 (-) True XLOC_034989
TCONS_00068050 mRNA downstream 78429 41713920 ~ 41726657 (-) False XLOC_034989
TCONS_00068049 mRNA downstream 112082 41632928 ~ 41693004 (-) True XLOC_034987
TCONS_00068046 mRNA downstream 177130 41517173 ~ 41627956 (-) False XLOC_034986
TCONS_00068057 mRNA upstream 8956 41821311 ~ 41851605 (-) False XLOC_034991
TCONS_00068058 mRNA upstream 8959 41821314 ~ 41858513 (-) True XLOC_034991
TCONS_00068059 mRNA upstream 60725 41873080 ~ 41881238 (-) False XLOC_034992
TCONS_00068060 mRNA upstream 60927 41873282 ~ 41881177 (-) False XLOC_034992
TCONS_00068062 mRNA upstream 91185 41903540 ~ 41915312 (-) False XLOC_034993
TCONS_00068043 other downstream 311955 41493017 ~ 41493131 (-) True XLOC_034985
TCONS_00068036 other downstream 388779 41414590 ~ 41416307 (-) True XLOC_034982
TCONS_00068023 other downstream 855896 40948875 ~ 40949190 (-) True XLOC_034975
TCONS_00068010 other downstream 1254032 40538570 ~ 40551054 (-) False XLOC_034968
TCONS_00067999 other downstream 2089013 39715712 ~ 39716073 (-) True XLOC_034962
TCONS_00068069 other upstream 341055 42153410 ~ 42153524 (-) True XLOC_034997
TCONS_00068070 other upstream 478623 42290978 ~ 42291094 (-) True XLOC_034998
TCONS_00068072 other upstream 999700 42812055 ~ 42812169 (-) True XLOC_035002
TCONS_00068074 other upstream 1520273 43332628 ~ 43332742 (-) False XLOC_035005
TCONS_00068078 other upstream 1750769 43563124 ~ 43563240 (-) True XLOC_035008